Array 1 326-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000019.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325 29 100.0 32 ............................. GTCGCCGCGCTCGCGATCGGCCGGCGGAAGGT 264 29 100.0 32 ............................. GCCATGACGCAGAAGACACCGGCCGAACTCCG 203 29 96.6 32 ............................A AGTTATTGTGAACCTGAATATGGATATGGTGG 142 29 96.6 32 ............................G TCATCACGTCGCGGCGGACGCCGAGATTCGCG 81 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTGCTCCCCGCACCTGCGGGGATGGCCCC # Left flank : GACGGGGAGATTCCCGGCGTGGCCGGTGAAGTAGGCATCGAGCCCGAGGGTTTCCAGCTGTCCGTCCTCCCCGCGGGAGAGCGGGGCGTGGAGGTCGGGCTGAGGTTCGACAAAGCGGTGGCGGAGTCCGAGACCGTCGAGTACACCCCTCTCGGGCCGGCGACTCTCCGCATGGAGCAGGTGCGTTCGGTCGAACTGCCGACTCCCGGGACGAACCTCGATCCGCTGTGGAAGAGGGTTCTGCACGGTGAGGAACGGGACGAAGTTCTCCGGATGCTGTGGGACGAGGAGAAGGACGTCCTTCATGTGCGGGACGCCGGTACACAGCTGTCCTGTCGTGGGGGTGTGTGGCGATGGGACCTGACGTAGTAGCCGCCGCTTGCAGAAGTTCCGCCCCCACGCCTGTTTGCCGGATGTGCAGCCTCTCGCGTCTTTTGCCGGAATCGGTGAAACTGGTGAAAACCGCGCCCCCTGCGCCGTAGACTCGCAGGTCACGCAGT # Right flank : CGCAAATACTCCTCGCACTCGCGCGCCGTCCACCTGCTCCCCGCACCTGCGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62565-63570 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000020.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62565 29 100.0 32 ............................. TTTCATCAAGGCGGCCCGCACGCGGGCCGCGC 62626 29 100.0 32 ............................. ACGGCACTTACTCCGCCAAGGAGTACCAGCAC 62687 29 100.0 32 ............................. CCAGGCGCAGTACCCGGGCGCAGCCAGGCGCA 62748 29 100.0 32 ............................. GGCCCCGGCCGGGGACGGCCGGGGCCGCTCAG 62809 29 93.1 32 ..........................T.G GCGCGGGCGATCCTCGCGGAGGGCTCGGAGAG 62870 29 100.0 33 ............................. ACGCCGTAGCTGATCCGCAACCAGGACTGCGGG 62932 29 96.6 32 ............................T CAGGCGGGAACATTTTCGCGCACAACGCCAAC 62993 29 100.0 32 ............................. TGCTCCTTGAGCCACACGGTCTCGTCGCGGAT 63054 29 100.0 32 ............................. TACGGTTCCCGTCTTGGGATCGGACAGGGTGA 63115 29 100.0 32 ............................. TCCCAGCTGAGGGTGATCGCCTCAGGCGAGTC 63176 29 100.0 32 ............................. TCACCTCCGGCAACGGACAGGCCACGGGGCAA 63237 29 100.0 32 ............................. GCTTCCTCAGTGTGATGGAGTGTTAGGAGGCT 63298 29 100.0 32 ............................. CACCACGAGGGGCCCACACCGACCGGTGTGGG 63359 29 100.0 32 ............................. CGTCCGGCAGGCTGATGTCCGCGTACCAGAGC 63420 29 96.6 32 ................T............ CCTTCTTCGTCCTGCGGCGTCCAGCGCAGCAG 63481 29 100.0 32 ............................. ACGATCGGCGGCGTGTGGTTTGTGGCGGTTTC 63542 29 86.2 0 ..............T.........A..TG | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 CTGCTCCCCGCACACGCGGGGATGGCCCC # Left flank : CGAACCGGGCGTCGGCGACAAGGACCTGAAGGTCACCGACCACCCGCCGGAGCACATGCACCGCGCGATCGCCGCCGCCCTCGGACTGAGCGAGATCCGGGTCCTCACCGCCACCCAGGACGTGCACTCGGCCGAGCGCGAGCAGTGGGACGACGGCTGCAACGTCCTCGCCGTCGAGCCCGGCGTCGTCATCGCCTACGAACGCAACGCCACCACCAACACCCACCTGCGCAAACAGGGCATCGAGGTCATCGAGATCCCCGGCAGCGAGCTGGGCCGCGGCCGAGGCGGCCCCCGCTGCATGAGCTGCCCGGTCGAACGGGACGCGGTGGGGGGTTACTGACCCGGCCTGGGGCGGGGGTTCGCCGGCGCCGGTGACTCCGCCGTTGTGGGTGACGGGGCGGCGAGGTGCCCGGAGGGGCGATATGTCCCACCTGCCGGATTCGGCGAAACTAGCGAAAACCAAGGCCCCTGCACGATAAAATCGCAGGTCACATAGC # Right flank : GGAGCCAAAGACCGGGCAGCGTCCTCAGTGGCCGGTGCTCGCTCGACTGCTCACGTCACTGCGGTCAATGCCGCGTAGACCACGATGTTGCCCAGGTAGCCGGTGCCCTTGACGTAGTCGCCGCCGCAGGTGATCAACCGCAGTTCGGGCCGGCCGGTGCTGCCGTAGACCTTCTTGCTGGGGAACTTCTCCCTCTCGTAGAGCTCGACGGCGCGGACGGTGAACACCGCTGTCTTCCGGTCCACCCGGCTGATCTCGATGGTGGCGCCCTTGGTCAGGGCGCCGAGGTTGTAGAAGACGCCGGGGGCGCCGGTGGGGGTGTCCACGTGTCCGGCGACGATGGCGGTGCCTGCCGAGCCGGGAGTCGTGCCGTCGCCGTACCAGCCGGCGACGTCGGCCTTGTCGCGGGGCGGAGTCTGGAGCGTTCCCGCCGCATCCAGACCCAGGGGTGTCATCGGGGCGTCCACGCCGATGGCGGCGATCCGGATCCGGACCGGATC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1893-2385 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000224.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1893 30 100.0 36 .............................. CAGTCGACCGCGTGGTCCCAGAACGCCTCGCCGGCC 1959 30 100.0 35 .............................. ATGACGACATGGGTGAGCGGGCCGGGCAGTCCCGC 2024 30 100.0 37 .............................. GTTCTGTGGCGAGTGGGTTTCCTGCCACCGTCATCCG 2091 30 100.0 38 .............................. AGTAGTCCCGAGACTTGCGCTCAGCCATGAATGCGCGG 2159 30 100.0 34 .............................. TGCAGGGCGAGGCGGAGCGCGTTGATGGTGTCGA 2223 30 100.0 37 .............................. AGTACGGAGCCCCACGACCGGTCTCCGATTTCGCCAT 2290 30 100.0 36 .............................. GCGGGCACCCACAGGACGCAGTCAACGGGCTGCCCG 2356 30 96.7 0 ........................T..... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 36 GCCGGTGATCAACCCTGGAGGGATCGAAAC # Left flank : AAGGCGTACGATTCAGTACGCGACCTGGCGCTGTCTCCAGCCGAGTCGCGGAACTACATCTTGCGCACGCTGGAGGGAGTGCCGTGCGAATCGACGACCTGAGCGCTGCTTCGTGGCGCAAGAGCAGTTACAGCAACCAGGACGGTGGTGCGTGTCTTGAGGCGTCATATGACTTCGCGACCACCGTTCCGATACGTGACAGCAAGAGCCCGCACGGCCCTGTGCTCACGTTCGCGGCCGATGGCTGGGCCTCGTTCGTGACTGCCGTGAAGCGCGGTGAGTTGGGAACCTGACCTGCGTACAGGGCTACAGCGCCCCCAAGTCGACTGCGTTAGCGCATCGATGGCTTGTGCGAGGCGGTTCCGCGCTGCGATCGGCAGGAAGACCGGCAAGGGCTAGGAAGCGCTTTGACCTGCGCAGTTGCATTACTGGCGGAACGCTGCAGTTCTCCCCGCCGCAAGAGCTGCGAGGGCTTGCGTGACCTGCGGCTTTACCCTCGG # Right flank : CTACGCGGCCCGCCTGCGCACGATCGCGGAGAGCTTGAACGCGACTTCGTGAAGCTTGTTCAGGCTCAGCCAGGCTCCCTCTACCACAACACCTGGCTTTTTATCGAGGTTTCCTACTTTCTGCCCCAGCCGGCATCAAGTCTCAGTACCGTGCCATGCATTGCGGCTGCAGCAGGCCGAGTGCTTTCGGATGCAGCCGGCCTCGGGATGGACATACGGATGCGAGGGGCTCTTGCGGGTCAGGGTTGACGTCGCGGCGGACGTGCCCTTTCTGGACTGGAGGGATGTACACGGTCCAGCGCGTGCCGTGCTGTACGGGTTGCTGGAAGACCAGGATCCGCAGCTGGCTCGTTCATTGCACGACAAGGGATGGCAGGGGCAGTCGCTGCGCCCGCTGGGGATGACGAGTCCGCAGTTCAGAGGAACGCCGCGGAAGAAGGACGTGTATCCGACGTCGCCGGACGGGTCGATCTGGTTCGGGTCGCCGGTACCGCAGATTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGTGATCAACCCTGGAGGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 78788-78454 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000034.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 78787 36 100.0 40 .................................... AACGCTCCTTGAGCAGCTTCAGCGCCTCTTCGAGAGACTC 78711 36 100.0 41 .................................... CTCCTGGATACAGGGCGCCCCCTGTACCCGTAGGACCTTTG 78634 36 100.0 34 .................................... TCGCCGTCCTTGTAGTACGGCTTGGCATCGAACT 78564 36 100.0 39 .................................... GTTGTCCACAACCCCACTGGCCCCGTCGTCAGCTGTGAT 78489 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 39 GTTCCTCTGGAGTTAAAGCCCGAAGGGCATAGAAAC # Left flank : CACCGCACCTGTCGACAGTGGTCGTCACCGGTCGCCTCCGAGTAACCTCGGACGGCCCAGAGACGGCCCGAGCGGGGGTATCGCGAACGCCCTCGATGCGAACTGCGGACGGTACGACCGCTGAGGTCCTAACTCTTGCTGTCTTCCGGAAGCCCACCCGATGCCCACGGGCGTTCCCGGCGATGACAGCATCCCGAGGCAGTGAGCTGACCAGTTGCCTGGACGAGACGATGCCGTCGGCTGGGGGCCGGCATCATGGACGCGGTCCGTGTGCTCTGAAGACGATCGGGGTGGTCACAAGTTGGTAGGGCCGCACTTCCCGTAACCGGACTCAGTCCTGAAGCGCCCAGAACGCCGTTTGCCGCGCAAGCCGTCTGTGCAGGTCAAACCCATGATCAACGAGAATGTGATGCACGACACGCAGATCCGGAGCGACTGGCGCTCGCCGTCGCGCATCGGGCATCATCGACGCAGGCCACAGCCCCCTCCAGACGGGAAGG # Right flank : GCCGAGATGGCGATTTCGACGGACAGGAAAACCGTCGTGGTGGTGACACCGACGTGGGTTCAACCCCCGCCGTCTCCGCTCCGCGAATTGTGAGAACGGCCCCTGACCGAACAACCAGGTCACGGGCCGTTTTTGTGCCGGGCTACTGTGGCTGCCTGGCATTCTCCGTGGTTTTCCGCTCGATCGGGCACACGTGAGGCACGGCTACCTTCTGATCCCCAGCTTTATGTGGATCGGTTGTAGCCGGTTACCCCGCATTCTCATTCCGCACCGTCCTGCGCCAACGGGCAGTTGGCTGCGGCGAGAGGTCGGATTCGAGACTTTGGGCGGGAGCTGCTCTGACGCGAGTGATCATGGCACATCACGTCGACTCACGGATCTGGCAGGCTTACAAGCCTGCCCATAGTGCCCGATCTGGGCCATGGTCTTCGAAGCTCGCACCAAAGTGGCTCCAGCCCAGACCCCCAGCCCAGAACCGTGAAGTCGACCGGTCTCAGCCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCTGGAGTTAAAGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 1247-120 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000363.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1246 29 100.0 32 ............................. GTTCCTGTCTCGCCGTGGTGAAGCGGCGCGAG 1185 29 100.0 32 ............................. GTCCTGAAGAACTATCTGTCGGCCGTGGGTGA 1124 29 100.0 32 ............................. ACCAACGACTCGGGGAGCGCTGAGGGTAACGG 1063 29 100.0 32 ............................. CGCCGAAAGCGCCAGAGTCCTTTGCAAGGTCA 1002 29 100.0 32 ............................. GTGATCATCGCCGCCATCCCCGGCACCGTGTG 941 29 100.0 32 ............................. CGTCATCCACCATCACAACCGGATACACCTGT 880 29 100.0 32 ............................. CGTCGCCGAGGACTGCGGAAACTCCCTCTCCA 819 29 100.0 32 ............................. GTCGCCCGGCGCATCTGGCCCGAGCGCGGCGC 758 29 100.0 32 ............................. TCGGCCTGGACCCCGACGAGGTACGCCGACTC 697 29 96.6 32 ............................T GCACGGCCAGGTCTGGCGAGGCGCCCCGTTCG 636 29 100.0 32 ............................. TCGTCGACGTAGCGGGCGCGGCAGTTGGCGTC 575 29 100.0 32 ............................. TGGCGTGGCACACCCCTGCACGTCCTGTTCCC 514 29 100.0 32 ............................. CGGAACCTTAAGCTCCTTGAATCGGCGCTCAA 453 29 100.0 32 ............................. AGTCCTCACCTCCCTGTGTGAAGCCACGTATG 392 29 100.0 32 ............................. GTCGCGGTGGCCGCGGACGACGGCAGCGTGCC 331 29 100.0 32 ............................. GCCTCGGGGTCGGCGTCGCCCTCGTACTGGTC 270 29 100.0 32 ............................. CACCCGATGACGAGCCAGTCCTGGCCCTCGTC 209 29 100.0 32 ............................. CGCGTCCGGTTCCTGTCCGCGGTGCTGTCGGA 148 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCACAGGCCCCTGCGGCAACTTCCCGCAACGAACCACAATCCGGCTGGAGCAGGGCCTCCAAACGCCGCCGCTTCGGCAGGAGGCGATAGTCACAGTGTCCCTTCCGCCTTGTTTGCCGGAATCAAAGAAAGTGGTTCAAAACTGCGTGTGCCCTTAGAAAACCCGCAGCTCACACAG # Right flank : CGTTCCTGTTCTCGCCCGGTCTAGGGCTTGTCTGGCAAATGATTTTGGTGGGGTGTGCGGAGCCAGAGGATGAGTGACGCAAGGTGGAGTCCGGCCCGGTAGCGGGCGGCCAGTTTGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-1156 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000411.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30 29 100.0 32 ............................. GTCTCCAGCGGGATACGCAGCCACTTGGTCAG 91 29 100.0 32 ............................. TCGCCCTGGACGAACCGTTCGAATCCCTGGTC 152 29 100.0 32 ............................. TTCGACAAGTGGACCCGACCGTCGGCGTACTG 213 29 100.0 32 ............................. GACGGCGCGTCGTGGCTGTGGGCCGAGCTCAA 274 29 100.0 32 ............................. GCCGAGGCGGAGCTTGCGCGGCTAACCCGTGA 335 29 100.0 32 ............................. GACAGGACGGCCCAGCCACCGCGCGAGGCGGA 396 29 100.0 32 ............................. TCCCCGTCGCCGTCTTCGGGCAGCACGGGGAA 457 29 100.0 32 ............................. TTACAAGCCGCGGCATCGCTGAGCGTGAGTGT 518 29 100.0 32 ............................. AGCTCCTCATCCGTGATCCGGTCTTCCGAAGG 579 29 100.0 32 ............................. CCGTCGGGTGACCCCGCGCTGGTGATTGCCGA 640 29 100.0 32 ............................. ATTGACTTCCCGATCCCTCAGCGCCCGGTCAA 701 29 100.0 32 ............................. CACGTCTGATTGATCCGGTCGCAAATAGGAAT 762 29 100.0 32 ............................. GTCAACTCCACGTCGCAGATTGCCGAGGCTCT 823 29 100.0 32 ............................. CGGGCCATGGCCGGCGGCCCGGGGGTGTCGGA 884 29 100.0 32 ............................. GCCGGGCTCGTGCCCGGGACGCATACGAGCGG 945 29 100.0 32 ............................. CCGCCGAGGTCGGTCGGCTGCGCCGCGTCCGA 1006 29 100.0 32 ............................. CGACACGCCGGGTCGGCCGCCTCGGCGGCGGT 1067 29 100.0 32 ............................. GCACCCGCCGTGAGCGGGCCGAGCACAGCGCC 1128 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AATTATCAGACAGGCCCTAGGGGCGCGAGC # Right flank : TCGGCAGTGATCCGCTCGATCGGCGACCAGCCCTGCTCCCCGCACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7277-9623 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000144.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7277 29 100.0 32 ............................. GACCAGGCGGTGATCCGGGTACTCCGAGCCCT 7338 29 100.0 32 ............................. CTTCGCTCGATCGCGCGGCGTGCACGGGCGGC 7399 29 100.0 32 ............................. ACCGTGATCCGGGGCCGTGCCGCGCTGATCGC 7460 29 100.0 32 ............................. GCTGCCGGGGTTCAGGCCCGTGGCCTTGGCGA 7521 29 100.0 32 ............................. GTCGCGCTCGCGTTCCTGTTGGGCAGGCTGCC 7582 29 96.6 32 ............................G GCCGAAATCGTCGAGCCAGTGGATCACGCGTA 7643 29 100.0 32 ............................. AACCCACGAACCTTGCCCGTTGAGTGGTCATG 7704 29 100.0 32 ............................. GTTCCGGTCTGCCTACATAGAGGGGTCCGCAA 7765 29 100.0 32 ............................. CGGCGGGTGTACGACGCGCAGTCCGGGGAGTG 7826 29 100.0 32 ............................. GTCTCTCCCCCACACCAGGCCCCACGACTCGA 7887 29 100.0 32 ............................. CTGCGGGCACCCATGTAAGGCCGTAGCCGAAC 7948 29 100.0 32 ............................. ACGTTCGGCGACTTGGTGATGAGCGCGACGAA 8009 29 100.0 32 ............................. GGGCACTCGACCCGCTCAGGGTGGTCACCGCG 8070 29 100.0 32 ............................. CCTTTCAGCGCGAGCGCGCTCAGCCTCACGCT 8131 29 100.0 32 ............................. GCGTGGGAGGCCGTGGCGAGCCTGGACGCGGC 8192 29 100.0 32 ............................. TGCCGGGCGCGACCCTGTACGTGACTCGGCAG 8253 29 100.0 32 ............................. CACTCGTCCCCGATCCTGACCTGGCGGGGTGG 8314 29 100.0 32 ............................. TAGGAGCAAGAAATGGCTCTGGTCAAGCTGAC 8375 29 100.0 32 ............................. GCCCGGGTGCGGATCGGGTGAGGCTTGGCCTT 8436 29 96.6 32 ............................T TAGGGATATGAGTACCGCGATCATCGCTCGCA 8497 29 96.6 32 ............................T CCTTGACCCGGAAACGGGTGAAGTTGTCGGCG 8558 29 100.0 32 ............................. GGGGCTTGTGGTTCGTAGCGAGCATGATCAGG 8619 29 100.0 32 ............................. GGGGCTTGTGGTTCGTAGCGAGCATGATCAGG 8680 29 100.0 32 ............................. TCTTTTAGAGCGTCGGCCGCGATATCAGCATC 8741 29 100.0 32 ............................. CCAGCGTCCGGGGCACTGCCCGGTCAGGTCAC 8802 29 100.0 32 ............................. TGGAGGCACCGCGCGAGGATCGCGATCACGGC 8863 29 100.0 32 ............................. CAGCGAGACCTCTCGGATCATGCCGTGGATGA 8924 29 100.0 32 ............................. TCAGGCGTGTTGGTCAGGGCCTTGGCGTCGGG 8985 29 100.0 32 ............................. CCGCGTTCATCTTCGTCTTCCAGGCGAAGACC 9046 29 100.0 32 ............................. GAGCGGGTCCCCTCCGCAGACGCGGCCCGTGA 9107 29 100.0 32 ............................. TGGGCGTCGCAGGTGTCTTCGTTGGGGGTGGG 9168 29 100.0 32 ............................. AAAGCTCGGTCCCGGCCCGGTGGAAGTGCCGG 9229 29 100.0 33 ............................. CCCTGAGAGGGTCAGGGCGTACCGGGCTGCGTA 9291 29 100.0 32 ............................. TCTCTACGTCCGGCCAGGTGGTGCGCCTCGTC 9352 29 96.6 32 ......................C...... GTCCTGCACGCCCCGCGCACCGGCCGCCACGT 9413 29 100.0 32 ............................. ATGGCGCCTACGTGGGCGGGGCGGTTCGTCTG 9474 29 96.6 32 .........................T... TTCCCGAACCTCTTCGGGCAGGAGCCGCCGAA 9535 29 96.6 32 .........................T... TACACCAAGGGTGGGCAGGCGTCCGTGCGGGG 9596 28 82.8 0 .............C...-.A.....T..T | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.0 32 CTGCTCCCCGCGCATGCGGGGATGGCCCC # Left flank : ATGAACGCCTGCCCCTGAACCCTCCGGGTGCCTCCGGACGCTCCCGGAAGCCGGGGGACGCACCCGCGCCCCCTCCTGGACCCGCGCCCTCCCGTCGCCCGTGCCCGACGGGAGGGCGCACCCACGACACCACCCAGGACGGCGCCCCGGCCCCGCCTGCCCGAGACCACCGACCGCATCCGCACCGGAAGCCGCACACCGGGGCAGCGGGGCGGATCGCCCGGCCCGGCAGCGACCAGACGCCGTGCGGCGGACGGCAGGGCCTGACTCCTCCACCGCAGGACGTACCGGTGCAGGCTTGCCAGGGAGGAGGAGACGTCGGTCTGGTGCGGCGTCAATTCAGAACAAACAGCGGACGGTGGAATGGGGCAACTCTAGGATCAAGCCCTCGGCCAGGCCGTCATGACAGAGAAGCGAGAGGTGCTATGTTCCTTTTGTCGGACTCGATGAAACTGACGAAAACCATGGGGCCTGCTCCGTAAACCCGCAGGTCACGCAGT # Right flank : GTGCGGGATCCGCAGCCGAAACTGCGGGCTGTGAGGCCTTCAGCGCGGGGGATTACAACGAGCGGGTGGAGCACTGGTCCAACGCAACCGAAATGGTTACCGACGAGCGGTACAACTCCTTCTCAGGGAAACTCGCCGGAGCAGCAACCAATCCGGTTGAGTGGGGCGCCATGGGGGAGTTGAAGCAGGCCAGCCGCTGGAGACCCAGCTTCCGCGTTTTTCGAGCTGTGCATGTGCGCCCCGCGCAGGCCGAAAGAGACAACCTCTCGTCCAAGACGCCCATCGGAAGTCTCGAGACCGCTGCCTAAGGGCTGTCCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20-1327 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000086.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 ............................. CGGGACCTGGAGAAGATTGCGGAGCGGGTCGG 81 29 100.0 32 ............................. GTTCCTGTTCTCGCCTGGGGTAAAGGCGACGA 142 29 96.6 32 ............................A GAACTCGACCGGTCTTCCTACCTTCGTCGTCG 203 29 100.0 32 ............................. CGCCCACGTCCCCGCCAGGAGGCCCGCATGAT 264 29 100.0 32 ............................. GCTTAGTGTCGACGGGCGCTCGTGTCGGGGGA 325 29 100.0 32 ............................. GGCGTCCCAGTCTCCGGCGATCTCCCAGCCAG 386 29 100.0 32 ............................. CAAACTGCGCTCCGAAAATGGCTCTTGCGATT 447 29 100.0 32 ............................. GGACTGCCCTGCCTCGAGGACGTGGAGCAGGG 508 29 100.0 32 ............................. GAGGGTCGGCTGCCGGTGGGGCGGGCGGCGCG 569 28 96.6 32 .........-................... TGCACGCCTGGTTCAGCAGCGGACACCCCGGC 629 29 100.0 32 ............................. GGGACGGTTCGAAAGACGGCAGGGCCTGGTGC 690 29 100.0 32 ............................. GCCGCACCCTGGGCGGCACCCACGACCGCGGT 751 29 100.0 32 ............................. ATTTCGCGGCCCCGGCCGGGGACGGCCGGGGC 812 29 100.0 33 ............................. CCCCTTCCGGATCAGCCCCTCGTCCAGCGCCAC 874 29 100.0 32 ............................. ACCGCCCGGGTGGCCTGGATCTGGTTGCCGTT 935 29 100.0 32 ............................. AACGGGAGCACCCCGTACCGGCGGGCCTCCCG 996 29 100.0 32 ............................. GGCTCGCTCAGGGTCGAGGCGGTCGATCGGCT 1057 29 96.6 32 ........................A.... GCATTCTCAACGTTCGTGTAGGTCCCCCATGC 1118 29 100.0 32 ............................. CAGTCCATGACGGTGAGGGCGTCGTTGTCGTG 1179 29 86.2 32 ...........G...........A..T.A ACCTGCCCGAAACGTTCCGGGCAGCACATGCG 1240 27 89.7 32 ............T..........--.... AGTGGTGGCTGGCTGCCACTCAAGGCACTGCC 1299 29 82.8 0 ......A......T.........AT...G | ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.7 32 CTGCTCCCCGCACACGCGGGGATGGCCCC # Left flank : CAGGGCAATACACCTAGGGC # Right flank : GGCCCCGCCGTTTCTCGCAGGGGATAAGGATTCGGCCCGAGGGGAATCACGGCCGAGTGAAAACAACGGGGTACAGGCGGAGTTGGTACCGCAGGTGGGATCGGTTTTGGGATTGGTTTTTGGGTTGGTATCACGCGCGACTGCCCGTCTGGGTACGGGCACTGGTCGTCCTCGCGGCTGGATGGGGCGTCCTTCTCTGCGGTCAGCAGGTCGCCGAAGGGTACAGGGAGACCAGGGTGTACCTCGGTGCGCCGGTCTGCGAGGCCGGGAGTCAGAGGGGGAGCGGGGGCGACGACGAGGCGTGCGTGCGGCGCGAGGCGGGCACGGTGCTCGACCGTCGGAAGGGCGAGCATTGCTCCCACACCTACGACGGGACGAGCGGAGGCAGCACCACGTGTACGCCGTACTACAACGTCAAGGTCCGGTGGCCTGGCCGCACCGCCTGGCTGTCGGTGGATTCGGGGATGTACGACAAGGTCAGGGCGGGCGACCGCGCCGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8796-8158 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000065.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8795 29 96.6 32 ............................G CCCATACTCGCCGTGATCATCTGTGTCGGGTT 8734 29 100.0 32 ............................. GTCCCGGCTCCCGGTCCACGTCTGATCGATGA 8673 29 100.0 32 ............................. GACCCCCGCCTGCGCGGGCACGAGACGACCTA 8612 29 100.0 32 ............................. CCATCCACTCACCAACCAGGAGGAATCATGGG 8551 29 100.0 32 ............................. ACGTCCTCCCAGGTGCCGTAGCTGTCGGCGAT 8490 29 100.0 32 ............................. GTGCCCGGCTCCCCGCACGGGGCGGCCATGTC 8429 29 100.0 32 ............................. TCCCGCGCCACCGCCCTGAAAACCGCGGGCGG 8368 29 100.0 32 ............................. GAGGCGGTGAACCTCGAGCTGACCGGCTCGAC 8307 29 100.0 32 ............................. TTCCCGACTCCCGATCTTGTCTCCGCCGCTGC 8246 29 100.0 30 ............................. CACCCGGTGGTCAACGACATGGTCACGGAG 8187 28 89.7 0 ..-........................TG | C,G [8160,8181] ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TAGAATTTACGGCTCGCTCCAGAGCAATTGACGACCACTCACACCATAAGCCCCCAATGCCCTATTTGCCGTTTTCAGCGAAACTCTCCAAAACCGCAACCATGGAGGAGTAAAACCCCAGCTCAGCCAGCCTGCTCCCCGCACCCGCGGGGATGGTCCCCGGCGGGAGCGAGTTATTGCGTAATGGAACATCTGCTCCCCGCACCCGCGGGGATGGTCCCGTTGTGTCCAGAGTACGAGAGATCAGCGCTCCCTGCTCCCCGCACCCGCGGGGATGGTCCCTCCGTCTTCGCATTGTCCCTTGCGTAGACTATCTGCTCCCCGCACCCGCGGGGATGGTCCCGATCCGGCATGCTTCCCTCTCTAGTACCGATACTGCTCCCCGCACCCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCGCGGGGATGGTCCCCGTCGTCCGTGCCGTCCACCGAGTGCCACTTG # Right flank : AAGCCAACAGCACCAAAAGCACGGCGAAATGGCGGCAAAGTACGGAAGCAGCATGAACGTCAGGAGCAGCCGTACCCGGTACCGTCCCAGCCGCTGCGCGGCGGATGAGGCCGCCCGGCTACACGCCCCGCCAGAGGTTGGCGAATGCCGCGTCCTCGATGGCGCGGCGCTGGCGTACCGCCTCCAGTTCCATCACCGCGTCGTGGACGGCGGCGAGGACGGTGAGGGTCGCGTCGTCGGTGATGCCCGGTTCCGTGGTGGCCGGTTCGTCGAGGATGCCGACGGCCGCCGCCAGGGTGAGGAGCACCGGTTCGTCGGCCGCCCAGCGGCAGGCGGCGCGGCGTCGGGCCGGGGTGTCGGCGAGGACCGGGCGGCCGCCGCGGACGGGCAGCCAGCGGCCGCGTTCCCAGGTGAGCCGGCCCTCCTGTTCCAGGGCGGTCAGGTAGGCCGAGGTCAGGCCGTTGCCGCGTCGCCAGAGCCAGTCCTGGAGGGTTTCGTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9165-8953 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000065.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9164 29 100.0 32 ............................. CGGCGGGAGCGAGTTATTGCGTAATGGAACAT 9103 29 100.0 32 ............................. GTTGTGTCCAGAGTACGAGAGATCAGCGCTCC 9042 29 100.0 32 ............................. TCCGTCTTCGCATTGTCCCTTGCGTAGACTAT 8981 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GATATCGTGCACCCCGGCGAGCCACACGGCGAGAGCACGCGCATCCGCCTCACCGCCCGGCAGCACCTCAGCGACCAGCTTCCGCACCCCCGTGGGAAGCCACTGGTCCCACAGCAGGCCGGCCACTGCAGCGCTGTCCTCCATATGTCGCCACAGCGGCAGCCACCCATCGGTGCCACGGTCGTGTTTGGCCCATACGGCCCGAGCCGGCCCGCCGAGCCTGTGCAGCAGGCTGCTGCAAGCCCCTCCCCCACTGGTCATGCGAGCAGGTATACACAGGGCGGGCGCTCTTTCACACCAGATCTTCGAAAAAGGGCGGTTTCCGCAAACCATTCCCGCAGATCGCACCCAAAGAGCATGCTGGTCGCGTAGAATTTACGGCTCGCTCCAGAGCAATTGACGACCACTCACACCATAAGCCCCCAATGCCCTATTTGCCGTTTTCAGCGAAACTCTCCAAAACCGCAACCATGGAGGAGTAAAACCCCAGCTCAGCCAGC # Right flank : GATCCGGCATGCTTCCCTCTCTAGTACCGATACTGCTCCCCGCACCCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCGCGGGGATGGTCCCCGTCGTCCGTGCCGTCCACCGAGTGCCACTTGCTGCTCCCCGCACCCGCGGGGATGGTCCGCCCATACTCGCCGTGATCATCTGTGTCGGGTTCTGCTCCCCGCACCCGCGGGGATGGTCCCGTCCCGGCTCCCGGTCCACGTCTGATCGATGACTGCTCCCCGCACCCGCGGGGATGGTCCCGACCCCCGCCTGCGCGGGCACGAGACGACCTACTGCTCCCCGCACCCGCGGGGATGGTCCCCCATCCACTCACCAACCAGGAGGAATCATGGGCTGCTCCCCGCACCCGCGGGGATGGTCCCACGTCCTCCCAGGTGCCGTAGCTGTCGGCGATCTGCTCCCCGCACCCGCGGGGATGGTCCCGTGCCCGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18884-19806 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000065.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 18884 29 100.0 32 ............................. GTTCCTGTCTCGCCGTGGTGAAGCGGCGCGAG 18945 29 65.5 72 ...................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNCCCGCGGGGATGGTCCCGTCTTGGGCGTCCAACGGCCGTCCAGCCGCAC 19046 29 100.0 32 ............................. GCCATGACGCAGAAGACACCGGCCGAACTCCG 19107 29 100.0 32 ............................. CGGCGGGAGCGAGTTATTGCGTAATGGAACAT 19168 29 96.6 33 ............................A CCGGCCCGGCCCCCGGCCCGGCTCCGCCCACTG 19230 29 100.0 32 ............................. TGCGTCTCCTCGCTGGTGATCTCCTCTGCGCT 19291 29 100.0 32 ............................. GTTCCGGCCTGCCCTCGGAAAGGAGGGACTGT 19352 29 100.0 32 ............................. AACTGGGCCCACGGCAAATCGCAGCCGCGGCC 19413 29 100.0 32 ............................. TCCCGCCACCAGTCGGCGGCCGGGAGGAGCTG 19474 29 100.0 32 ............................. CTGTTCGGGTCTGGCTCCGTTGCCAAGGCACA 19535 29 96.6 32 ..................A.......... AACCCCAGTCGGGAGCGCGCGGAGCGGCAGCT 19596 29 100.0 32 ............................. TCGTGGGACGGGTACAACGTGCCCCCGGACGG 19657 29 100.0 32 ............................. GGCCGGCCCGGCAGAGGCCGGGCTGATCCCTC 19718 29 100.0 32 ............................. CATGTGCTCCCCGGCCCTGGCCTGGCGTACGT 19779 28 89.7 0 .....................G.-....T | ========== ====== ====== ====== ============================= ======================================================================== ================== 15 29 96.6 35 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CATCAACCACGATGGACCCGATGACTACTACGAGGACGTGAGCTGGTGACGGTCATCGTCCTGACCAACTGCCCGGCCGGACTCCGGGGATTCCTCACGCGCTGGTTGCTGGAGATCTCGGCGGGCGTGTTCGTGGGCAACCCATCGGCCCGAATCCGCGACGTGCTCTGGGCGGAGGTCCAGCAGTACGCAGGCCAGGGCCGTGCCCTTCTGGCCCACACCACGAACAACGAACAGGGCTTCACCTTCCGCACCCACGACCATGCCTGGCACCCGATCGACCACGAGGGCATGACCCTGATCCACCGCCCCAACCCCAACGCACAGGCCCCTGCGGCAACTTCCCGCAACGAACCACCATCCGGCTGGAGCAGGGCCTCCAAACGCCGCCGCTTCGGCAGGAGGCGATAGTCACAGTGTCCCTTCCGCCTTGTTTGCCGGAATCAAAGAAAGTGGTTCAAAACTGCGTGTGCCCTTAGAAAACCCGCAGCTCACACAGC # Right flank : TATCCACGAGCTGGTGCGTGAGCTGAACCGAGGCTGCCCTGTCGCCTTCTTCGTGGCCCCGGGCTCGGGGCTCCCGGTCCGGGCCGGCCGAGCAGCCCCGCCCCGCCCGGCGCAGGCTCGTCGACGGGCGGGGCGGCGGGGGCGCTCCTATGCTGAGGGCGCGGGCCGGCCGTCTGTGCGCGGCCGGTCACGTCGGTGTCCGGCGTGTGTCCGCCGGAGGTCCACCGGGCCCCGGGCCCGTCGGGGGCCGGCGGCCCTTCGCCGGAACTTGCCGGAATCCGCCGGCATCAGCCGGACGTCCGGCGGGAACACGAGGACACCGCAGCTCGTCCCGCGTCCGTCGGCGACGGCCGCGGGCACCGTTCTCACGCGTCTGGAGGCGGCCCATGACGCAGGTGTGTTCTCGACTGTGCCGGGGTGTCGTCGTCACGACCGCCGTAGGGATGCTCGCGGCACCGTTCGGTGCGGGGACCGCCTCGGCCGCGCCCCCGTCCGTGACC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4681-5197 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000173.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4681 29 96.6 32 ............................T CACCCCTCATCTAATGATGAGGTGATTATTGC 4742 29 96.6 32 ............................A GACTGCTGCTAATCATCCGGCTGGTACTTCTT 4803 29 100.0 32 ............................. GGGGAAATCGAATTCGTGGACGTCCGGAAGTT 4864 29 96.6 32 ............................T TGTGAAGCCTATTTACGGTCCGGAACTCGTGC 4925 29 100.0 32 ............................. GATGTCACCCCCTGTAGCGAGGAATTATGTTT 4986 29 100.0 32 ............................. GATGGTCTGGTCGTTACCGTTCTCGTCCTTGT 5047 29 100.0 32 ............................. ACTTGATGTGTCGGACGGCGGGTTTAATGGAT 5108 29 100.0 32 ............................. GAGCTGGTTCAGGAACATACGCCGGGACTGGT 5169 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 CTGCTCCCCGCACACGCGGGGATGGCCCC # Left flank : CGAGGGCGACTCCCTGCTGCTCCTGCTGGACGCCCAGGGCATCGAGTGCTCCACCGGCTCCGCCTGCACCGCCGGCGTCGCCCAGCCCAGCCACGTCCTGCTCGCCACCGGCGTCGACCCGGACCTCGCCCGCGGCACCCTGCGCTTCTCCCTCGGCCACACCTCCACCCGGGCCGACGTCGAAGCGGTCGCCAAGGCCATCGGCCCCGCCGTGGAACGGGCCCGGGCGGCGGGACTGACGTAGGGACTTCCGCCCGAGCTGCGCGGCGGACGGACAGCAGGGCGGCCGGGGTGGAAAGCCCGATTCGGCGCGGCGTCAACCCTCGGCTGTTGCTGATGGAGAACGACCGGCAGACGCCGACACGAAGGCGCCCCGAGGATCGAACTCTCGATCAGGTCTCCATCACAGGAACCCAAAGGGTGGTGTGCGGCATTTGCCGGATTCGGTGAAACTCGCCAAAACCATGGGCCCCGCACCGTAAACTCGCAGGTCACGCACT # Right flank : GTTTCGAGGCTCATTCCTCATCCTCCCTAGGTGTTCTGTCCACGGAGGTTGGTGACAGCGATCACTGACGTGTGATCTTGAAATGGGTGAGGGCCCTCTGGCTCGGTGTGGATTGCGAGATCTGCACCGGCGACCAGAAAGGCCCTCGTGCCCCACCGTAATGCACCCCTGACTGAGACTGGACGACTGCGCCTGGCCCGCTGCGTCGTCGACGACAACTGGCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8757-8497 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000184.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8756 37 100.0 36 ..................................... TCGTCCGGATGCTGGCCTTGAGCCGGATGTTCTGCA 8683 37 100.0 40 ..................................... GTAATGCAACTACCATACGCACAAGCAGCATGGAAGAGCA 8606 37 100.0 36 ..................................... GCACCAATTCCCCAGGGAAGATCTGATCCCAGATCT 8533 37 94.6 0 ..........G.........................C | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 98.7 38 GTTCCACCGAAACTGACGCCCGCAGGGCATAGAAACA # Left flank : CCCTGCTGATCAGCTACGACATCGCCGACAACGACCGTCGCGGCGAGATCTCCGACCTCTTGGCCGCTCATGGTGCCCGTGTCCAGTACAGCGTCTTTGAGGTCACTCTGCCGACGAAGAAAGAGGTTCAGCGTCTCCGCGGTGCCCTACGCAAGCTGATCGACCGGGACGAGGACCAGATCCGCCTCTACCCACTCCCGGCGACCACCCTGAACGAGCTGATCATCCTCGGCAACCGCCGTCTGGAGGAACGCGCCGACTTCTGGATCGTATGACGGAGCACCCCATGCCACGCACTCACCCCAACACCGGAGACGGCCGTAACCGCACCACACCCGCAACCCCCGAAAACGCCCTTTGCCGCGCGGCCCGTTTACGCAGCTCAGCCACACACTCCACGTCGACAGTGACGCGCGCCACACCTACTCGGGTACGCTGGCACACGACGCCGCGCACCGGGCATCATCACTGCAGGCCACAGGCCCCTCCCCAGACGAAGG # Right flank : CGGGTGCGAATACAGGCGTTTCTCCAAGCGCCGAGGTGAGTGCCCGGATACCGGACCCCGAATACAAGGGCCAAATACAAAGACGGCCACCGGCCGATCCTCTCGTTGCCGAAGGCTCGAAGGAGATCAGCCGGTGGCCGTTCGACGTACTCCGGGGCGGAGGGTGTCAGTTCGGGCGGCAGGCGGTGAGGAAGGTGGTGAAGAGGCGGGTGCGGTGCTCGGCGGAGCCGTCGGGGTCCTCCGGGTGCCATTGGACGCCGACGATCCACTTCTCCGGGTGTTCGACTCCTTCGACCGTCCCGTCGTCGGCGCGGGCCGCGACGACCAGTCCCTCGCCGGGTTGGTCGACCGCCTGGTGGTGGCCCGACCGTACGGTCACGCGGTGCTCGCCCGCCATCGCCGCGACCCGGGTGCCCTCCAGGAGCGTGACCTGCTCGTCGAGGAACATCGGTTCGCCCGGGCCGCCCCGGTGGAGCCGGTAGTCCTCGAGGTCGGGGACG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCACCGAAACTGACGCCCGCAGGGCATAGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 11554-11222 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUME01000184.1 Streptomyces thermovulgaris strain NRRL B-12375 NRRL_B-12375_contig_184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 11553 36 100.0 42 .................................... ACAGCCAATCCATTGATTCAACAATCAATCGCTGCTGCTCAT 11475 36 100.0 36 .................................... GAGCGGGCCGCCCACTCCAGGCTGAGTTCAATGATG 11403 36 100.0 36 .................................... CCGTTGTAGTGCGGATGCCCAGGGGTGTACCCCCCC 11331 36 100.0 37 .................................... AGTGAGGGGGGACGGGGAGCCGGTCAGGTCAGCTGTT 11258 36 97.2 0 ...................................G | G [11224] ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 99.4 38 GTTCCGCTGGATACGACGCCCGCAGGGCATAGAAAC # Left flank : | # Right flank : CCGTTGGCTGTGACATCGGCTTTCTGCCGGTCATTTAATTCACCGGAATTCATGCCCACAAGGAGGTCAAATTGGCCGAGTTGTTGCACCATGCCGCCTCCGAGGCCGTGTTACTCAATGCGTGGCGGGAGGTGCAGGAGAATGATCTGGAGGATGGCAAGGTCAGCCCACAGGTGGCCGCCTACTCCAACGGGATCCTTGAGCGGTTGGCAGCTCTGAGTCGGGCGCTCCGCGAAGGCACTTGGGAGCCATCTCCCGTGTACGCGGTGGAGATCGAGAAGCGATCCGGCGGGAAGCGACTACTGGCGGTGCCGGCCGTGGAGGACCGGATCGTGGAACGGGCGCTGATGGAGGTGATTGACGACACGATCGACGCCGTACTGCTGCCGTGGAGCTACGCCTACCGCAAGGGACTGTCCGTGGCGGACGCGCTGCACGATCTCACGCAAGCCCGGGACGACGGCGCACGTTGGGTGGTTCGCGCAGACATCAAGGACTGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCTGGATACGACGCCCGCAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //