Array 1 28-595 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOL01000053.1 Actinobacillus pleuropneumoniae serovar 12 str. 1096 contig00083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 32 ............................ AAAAAAAGGCGGTGGTAATGGCGAGAATAATA 88 28 100.0 32 ............................ TTTGCGCTTAACCAATCGACTGTACAGCCGTT 148 28 100.0 32 ............................ ATTTTCAAAACCTAAAAACTCATCATCCTTCC 208 28 100.0 32 ............................ AGTTGATATCCACGCAATTTGACGGATTTCTT 268 28 100.0 32 ............................ TGACCAAAGCTGGCGTGATTTTTACGGTAGCA 328 28 100.0 32 ............................ TCTTTAAATCGGGTTTAAAGTGCGGTCAAATT 388 28 100.0 32 ............................ ACAATAGAGGAATGTAATTCGCCGGTTTGTGA 448 28 100.0 32 ............................ TTTTCTAAGTCTAACATTTGATAATCCCCTTT 508 28 100.0 32 ............................ ATTAAATAAAGAGAGGAAAAAATGAGCAGTAG 568 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTGAAACAGAGGTAAAGACGTATGAAC # Right flank : TTTCCCTAGCCAAATGATTTGTCGATCATTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 482-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOL01000006.1 Actinobacillus pleuropneumoniae serovar 12 str. 1096 contig00061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 481 28 100.0 32 ............................ AAAGAGGATGATTTTGTGCCAAGCGTGGGAAA 421 28 100.0 32 ............................ TTAATACGGGTCATAGCGGAAGTATTACGTCC 361 28 100.0 32 ............................ GAAGAAAAAAACCGTGAAGAGCAAAGCGGCGC 301 28 100.0 32 ............................ TTGATTCGCATAGCCTGTCGGTTGAATGTTGA 241 28 100.0 32 ............................ TGGTTAAGATTATGCGGATCTTCACCCAAAAT 181 28 100.0 32 ............................ TATGATATATATTTAAGTTATAAGGAATATAC 121 28 100.0 32 ............................ ATTAGATTTTTGCCAAACGGTTTATTCTTTCT 61 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCGACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : AACTACACGACGACCGTCTAAAATCATCTCAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7592-6844 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOL01000005.1 Actinobacillus pleuropneumoniae serovar 12 str. 1096 contig00056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7591 28 100.0 32 ............................ TTAGGAGCGTTACAATGCCCGAACATCTTATC 7531 28 100.0 33 ............................ CGCTTGATGGAGCGTAAACGAATGAAGGCTTTA 7470 28 100.0 32 ............................ CTAAAAATCCAAAAACAGCCGAAGATATTAGT 7410 28 100.0 32 ............................ CTTACGGGTTGGCTACGCCAAACCTTGACAAT 7350 28 100.0 32 ............................ TATCCGATAACCTCTTCCTTAGTTTTGCCACT 7290 28 100.0 32 ............................ TTGCCAATATCGCAAAATACGTTAAAGATCCC 7230 28 100.0 32 ............................ TCGTGAAATTGCTGATTCAATGATAGGTGCTA 7170 28 100.0 32 ............................ TTCATACCTGAACCACCGGAAGAAATACTACA 7110 28 100.0 32 ............................ ATTCAGAAGCGGTCGTTGCTATGTAAAAGCAT 7050 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 6990 28 100.0 32 ............................ ACGTTTTACTAACGACTTCTTGCGTATAACCA 6930 28 96.4 32 ................A........... TTTGAAAAAATGAAAAGCAATATCAAAGCATT 6870 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATAATTGGCTTCTTAAGGTACGAAGATCATTT # Right flank : TCAACAGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTATTGCTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //