Array 1 136399-135393 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JYSF01000002.1 Salmonella enterica strain CVM 43814 43814_contig_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    136398	    29	 100.0	    32	.............................	AGCGAAAAAAAAGACGACGAACTCGTCACAAC	
    136337	    29	 100.0	    32	.............................	CGCACCTGCCGGGACATGACCCTGCCGGAGCT	
    136276	    29	 100.0	    32	.............................	GTCATTTTCTTGTTAATGGCGCTTGCATTAAC	
    136215	    29	 100.0	    32	.............................	CTGTGTGGTCTGTGCATAACGGTGTAACAGAG	
    136154	    29	 100.0	    32	.............................	CTGGGAAGATTGGGCGCTTTCAATATCTTCCA	
    136093	    29	 100.0	    32	.............................	AAAAATAGTCCTGAACGATAGCCCGCGCGGTC	
    136032	    29	 100.0	    32	.............................	CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA	
    135971	    29	 100.0	    32	.............................	TTTTATAACGACACTAAAACCCGCCAGTTATA	
    135910	    29	 100.0	    32	.............................	ATTTTAACGGCAAGGTCGACAGGAGATACCAC	
    135849	    29	 100.0	    32	.............................	GATCATCACCCAGGCATTTTCTGGAATATGAA	
    135788	    29	 100.0	    32	.............................	AATCCCGATGATCATGAATATTTCTGGCGCCA	
    135727	    29	 100.0	    32	.............................	GCTAAAACGGCGCTTGAGAACAGTATCAATAT	
    135666	    29	 100.0	    32	.............................	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA	
    135605	    29	  96.6	    32	.....T.......................	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC	
    135544	    29	 100.0	    32	.............................	GCAGAAACAGAAACCGGATATGAGCCATCCAT	
    135483	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA	
    135422	    29	  93.1	     0	A...........T................	|                               	A [135395]
==========	======	======	======	=============================	================================	==================
        17	    29	  99.4	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GCCAGCGGGGATAAACCGGTAGCCTTCAGACACTTTAGCCAGGTTCCCT
# Right flank :  TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//