Array 1 129777-125060 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCJ01000004.1 Neptunomonas phycophila strain 3CM2.5 CONTIG4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 129776 28 100.0 32 ............................ TGATCCCTAACGAACAACCACCAGCATTAGAC 129716 28 100.0 32 ............................ TAATTTGCGACAACGCAGACAAAAATTTATTC 129656 28 100.0 32 ............................ TACAAAAAAAAGAGGCCGTAGCCTCTTATGTG 129596 28 100.0 32 ............................ GCTGGCGTATCTCATCCATTTCAACTCTGTTT 129536 28 100.0 32 ............................ ATGCTGACCTAATGGCTGAACTGCCTTTTTAT 129476 28 100.0 32 ............................ TTACGCCGCTGGGCGTGGTTCGTTATCGTCGT 129416 28 100.0 32 ............................ TGAGCAAAAAACAGGTTGACGCGGTGTATACC 129356 28 100.0 32 ............................ TTTGGGCGTTACGATGGTGGCGTTATATTGGC 129296 28 100.0 32 ............................ TAGGAAAATCAATGGTTGCCGGTGTTACATCA 129236 28 100.0 32 ............................ AATAGAATCTATCGCCGCTTTCAAGTCATCAT 129176 28 100.0 32 ............................ TGAAAATCAACGGGTAGCGCTGTAATGGCTGC 129116 28 100.0 32 ............................ GCTGTCGTGTGCTCCGAAAATAAGCTGGCAGC 129056 28 100.0 32 ............................ CCACCAATCGCTATGTGGTTAACCCATTTCAT 128996 28 100.0 32 ............................ AGAAAGAGATTCAGGGCAGAACGTAAACGATA 128936 28 100.0 32 ............................ CATACGGCCTCCCAATCTGCATGTAAGCGCGT 128876 28 100.0 33 ............................ CGCATGATTAGCGGTATTCCTAGAGTCGGCAGC 128815 28 100.0 32 ............................ ACTTCAGCATAAGACAAAGAGGCATTAAAAAC 128755 28 100.0 32 ............................ GTAAAAGATCCCTCATAAACCATGACCTCAGC 128695 28 100.0 32 ............................ TGTTTTGAACTATAAGCTGCAACCGACCTTAC 128635 28 100.0 32 ............................ TCATAAGATTTTCCAGAACCGGGTCTGCCGAC 128575 28 100.0 32 ............................ ATCGGGGTTTTTGGTTATCGTATATTGATCAA 128515 28 100.0 32 ............................ GTCTAAATACATATCGATAATCTGATAAAAAT 128455 28 100.0 32 ............................ GTGAGAATACATTGTCTGTTTTTCCTGATATG 128395 28 100.0 32 ............................ CACACGCCCCAGACTAGATTGACGCACTTGGC 128335 28 100.0 32 ............................ TATATAAACCGTTTCACCCTCGTTTTTATCAC 128275 28 100.0 32 ............................ TTTAGCGTCCCTCCTTGATGAACGGCGTCTGA 128215 28 100.0 32 ............................ TTCTATAAAAACCCGATTCTTAAGCACAAGTC 128155 28 100.0 32 ............................ TTAACAACAGTTTCTTGTGTAGTTTGAGATTG 128095 28 100.0 32 ............................ TTACCGTGTGGACTGTAGCTTGGGCGGCTTGC 128035 28 100.0 32 ............................ AGATATAAGAAGGCGGGGCCAAGTTATGAGAA 127975 28 100.0 32 ............................ GTTTTTTGAAATAAGCTTGCGATTTATGCGTT 127915 28 100.0 32 ............................ TCGATCGTGTAATCTGAAAGCACATTAAGACA 127855 28 100.0 32 ............................ ATTAACGAGGTTGGGCTCATGATAAACATGTT 127795 28 100.0 32 ............................ GTAAAATTAAAACAAATCTTCCTCTTAATATT 127735 28 100.0 32 ............................ TAATAGAAAGTCCTTGGTGCGCGTCGTCCAGT 127675 28 100.0 32 ............................ AATGGAAACAACAGAGGCAGCAACGGTACTAA 127615 28 100.0 32 ............................ TGAATGCCTTGTTATGATCGGCACTGCTATTG 127555 28 100.0 32 ............................ GTCAGTAATGGCTATATCAACCAGAGCTGTCA 127495 28 100.0 32 ............................ TAAACGAAAACCAATATATGTAAGCATGAATG 127435 28 100.0 32 ............................ TCAGGATTATAATCACCCTTGTGATACTTGCA 127375 28 100.0 32 ............................ GTGCTGTGCTGACAATGGGAACCAATTTTTTT 127315 28 100.0 32 ............................ TGTGCTTGCCCACGGGTTGTGCTCACTAAACC 127255 28 100.0 32 ............................ TTTTTGGTGGCAGGTTTAGAACGGGCGACCCC 127195 28 100.0 32 ............................ TTTTTCTATAGTCCACACACCACCGCTTGAAA 127135 28 100.0 32 ............................ TGAATACCGCATTAACCAACGCCTGCAAACAC 127075 28 100.0 32 ............................ ATCAGGATTAACAGTTATAGTATATTTATCAG 127015 28 100.0 32 ............................ TTCTCAGTGATCATATACCCGTACACAGAGTA 126955 28 100.0 32 ............................ TATAACGCCCCGATAACAAACAATCGAACAAG 126895 28 100.0 32 ............................ TCGTCAAACCTCCGCAAATACAACTGAACATT 126835 28 100.0 32 ............................ TTGCTGATTGTGGCTTGAAAGTACTAGTCCTC 126775 28 100.0 32 ............................ TCCCCCGCCAGCAGTTTTGCCTATTAATCGAC 126715 28 100.0 32 ............................ TTTAGCAATGGAGTATGTGCCTTCGATGATAA 126655 28 100.0 32 ............................ TGTGTGTAGTGGCATTAAGAAGTGGTCTAATC 126595 28 100.0 32 ............................ TGTTGCTGAGGTGTCTGGAATTGAGGATTTAA 126535 28 100.0 32 ............................ TGTGTCTGTGAGTGGTAGCGGTATCTCTGTTG 126475 28 100.0 32 ............................ TGACAATGTTACGTTTTGCGTCACATCTAAAT 126415 28 100.0 32 ............................ CAATTCGGCGGCGACCGAAACAAAGCTTACCA 126355 28 100.0 32 ............................ TGGTGACGCATCAATAAACGGGTAACTGAATG 126295 28 100.0 32 ............................ ACGGGAATCATCACTAAAAAGATCAGTAATAA 126235 28 100.0 32 ............................ TATGGTGGAGTGACACACATACTGACCGATGC 126175 28 100.0 32 ............................ TTTATTGAATCCGGCTTGCCGTCCCTTCCTTT 126115 28 89.3 32 G.T.........A............... TGAATGCCTTGTTATGATCGGCACTGCTATTG 126055 28 89.3 32 G.T.........A............... GGTGGAGTTGCTGTTCACTCACAAGTGTACAA 125995 28 89.3 32 G.T.........A............... TAGCGTTGAAGGCCAGGAAGTTGCAAATGCTG 125935 28 89.3 31 G.T.........A............... GTGCGTGCTAAAATTGACGGCGAACGTTACG 125876 28 89.3 32 G.T.........A............... AATGCGCTCGTCAGACCAGACCGGTGCGCCAC 125816 28 89.3 32 G.T.........A............... AATAGCAATCATCATAATGCGCCCCATGGTGC 125756 28 89.3 32 G.T.........A............... TTTAACTAGGGGTTTCTTTTCAATCATTGTAT 125696 28 85.7 32 G.T......T..A............... TAGATGACTTGAGGGATGTGCTATCACAAATC 125636 28 89.3 41 G.T.........A............... GGCCGTTTACTATAGTTCCTTCACCTCCTTCACCTCCTTCG 125567 28 89.3 32 G.T.........A............... TTCATACGCATTTAGCAAGCCTCTCAAATCTT 125507 28 89.3 32 G.T.........A............... GCTATAAGGGTCTTGAATAGATGCCCACGAAT 125447 28 89.3 32 G.T.........A............... TCGCCGCCTCCATCGCCCGCATCTGCTGAAGA 125387 28 89.3 32 G.T.........A............... TGAATCTTGGTGGACTAGTTCTTATCCTGATG 125327 28 89.3 32 G.T.........A............... AGATGGAAAATGGATAGCGCAGGAATATAAAA 125267 28 100.0 32 ............................ AAAGGGAGTTTGCACGCTTCTAACGTGGATGC 125207 28 89.3 32 G.T.........A............... AGCAATCAAGAACCATGTCTCATCTGGCAGTC 125147 28 89.3 32 G.T.........A............... TCTTCTAGTGGCGAGGGTAATGCAAAGCAATG 125087 28 89.3 0 G.T.........A............... | ========== ====== ====== ====== ============================ ========================================= ================== 79 28 97.7 32 ATCCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : GAAAAGCTGAATATTGGGCGCTGGTTAAATCGCCTAACAGATTACGTACATATTAAAGAGATTGCCGACGTTCCAAATGATGTATCAGAGTACGAATGCTTCTCTCGGCGGATCAAGGCCGGATCGCCTGAAAAGCATATACGCCGACGTATGAAACGTAAAAATGAAACTCAAGAGCAAGCAGCCGAGTTCTTCGCTGATTATAAAATGGCAGAAGCCGATAAACAGTTGCCTTTTATTCACATGAAAAGCTTAAGTGGCGACCAATCGTTTCGCTTGGTGATTCAGCGAAAAACGGTAGGCGCTGCACCAAATTGCAATGCATACAGTACCTACGGGTTAAGTGCCGAGGGAGTGTTACCTAAATTTTGACCTAAAAAATCGTTCTTTAAAAAAATGTATAAAGACCAATAAGTTACAATATGCATTAAAATATAGGTTAAATGGAAGTATTAAGCCTATCTGTATGTTGTAGCTTAATTTTTTCGTTGTAAACTGTT # Right flank : ATACAATAACCTGTTGGCTAGGGTAGCGCCCGGTTATCAGAGGCTGGGTGCGTGTTTAACAATTGCCTAAAAAACTGTCTCGATAATACGCTGATTGGAATGTTCTATATGAGCTTTGAGTAGTTCACAGGCGGTTTTGTCATCTCGTTTAAACGCGGCTTCCATGATGAGTTTATGGTCATCTTGATGGGCTGTGTTTTGAGTGTCGTTAGTCGTTTGCTCTGATTGATGGATAAGTGACAGTCGGCGATATCGTTCGGATTGATCATAGAGTGTTGATAAAAAACGTAATTGCCATTGTGATGGGCATTGGCTGATCAGTGCCAGATGAAAGAGCCTGTTTTCTCTAATCAGTTCGCCTGCCATGGCTTCGCGTTGGCCTATGGCTTGTTGTTTGATGGTGATTTCGCGATGGCGTGCTCCGGCGATACTTGCTTCCCAGTTGAGATCGCCCAGCCGAATAGACTGTGCTAACGCATCTACTTCTAGCATGACTCGTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //