Array 1 43392-42036 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIFP01000009.1 Streptococcus suis strain LSS12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43391 36 100.0 30 .................................... CTTGGTCCTTGCGGAGCAGGTCAAAAGCAT 43325 36 100.0 30 .................................... GCAAAGACCCAATGTTACTTCATTCCATAT 43259 36 100.0 30 .................................... TATTCCTCCACAACAACTACATCAAACGCT 43193 36 100.0 30 .................................... CATGATGAATGGATTGAAGATGATAAAAGT 43127 36 100.0 30 .................................... CAGCAGATACTAACGCCGAAACTGGCGATA 43061 36 100.0 30 .................................... CTGTTGCCAGGCATGGAATACAATCATTGC 42995 36 100.0 30 .................................... AGGGTGGCCGTGCCTCTACTAAGTCCTCTG 42929 36 100.0 30 .................................... AATTTCCATATCCAGTCAATCACAATCAAG 42863 36 100.0 30 .................................... AATTCACGAATCCGTTCACTATGATGAACT 42797 36 100.0 30 .................................... GGATTCTAAACTAGACAGGCTTCGCTATAC 42731 36 100.0 30 .................................... CCTGCGCTGACGTGACGCGCTTGTAGGTTG 42665 36 100.0 30 .................................... ATCAGTCCCTCACTCTTCTTCAAACGGTAG 42599 36 100.0 30 .................................... TTACTAAGTAAGTTTGGAGCGGGCAACCGC 42533 36 100.0 30 .................................... TAAGATTAGACCAGTCGACTTCCACTTCAA 42467 36 100.0 30 .................................... TTACGCTTCTACAATTCATAATATCGCAAA 42401 36 100.0 30 .................................... TTTGCTACTGGATGAGCTTGAAAAAGCGCA 42335 36 100.0 30 .................................... ATGTTTGACAAATTCTACTAGTGTTGAGGA 42269 36 100.0 30 .................................... TCCAAACACTCGAGAAAAAGCAGTCCCAAT 42203 36 100.0 30 .................................... AACTACTCAATTAATCGGAAACTTAAAAAT 42137 36 97.2 30 ...........................C........ GACCCCGTCTTTTTCTTTCTTCATTCCATA 42071 36 94.4 0 ..........C...T..................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCGTCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTAATTTAAGCTTCATTTTTTTAGGATGAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //