Array 1 132271-130596 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKI01000024.1 Escherichia coli strain 570 BN4_570_1_(paired)_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132270 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 132209 29 100.0 32 ............................. CACCAGATCTGACATGGTGCGGTGATCGCGCA 132148 29 100.0 32 ............................. CCGGATACTAATTCGTGGAGCCTGCTGGACCC 132087 29 100.0 32 ............................. TGTTTCGGCTGATTTGTTCGCCGCGTCAGTGC 132026 29 100.0 32 ............................. ACAGTTCCCCGCATTAGCGTGGATAATCCGTT 131965 29 100.0 32 ............................. CCCCTGATTAAAACCAATAGTCTCGTAATATT 131904 29 100.0 32 ............................. TAATATGCTCTATAAGTGCCTCTATCCGATCC 131843 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 131782 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 131721 29 100.0 32 ............................. GACCATTCTGTGAGCCGTAAAACAGAAAAATC 131660 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 131599 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 131538 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 131477 29 100.0 32 ............................. CAAGTCGGGCGAAATGCAGGACACTTTATCCG 131416 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 131355 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 131294 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 131233 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 131172 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 131111 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 131050 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 130989 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 130928 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 130867 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 130806 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 130745 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 130685 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 130624 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 158274-157818 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOKI01000024.1 Escherichia coli strain 570 BN4_570_1_(paired)_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158273 29 100.0 32 ............................. GCGGTTTTTTTATAACATTTGATTCACTTCAG 158212 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 158151 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 158090 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 158029 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 157968 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 157907 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 157846 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //