Array 1 8236-9857 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDIE01000013.1 Lactiplantibacillus plantarum strain dkp1 NODE_13_length_100692_cov_33.2665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8236 36 100.0 30 .................................... AAAATGGATTTCTGAGCATTACTGTCCGAC 8302 36 100.0 30 .................................... TTAGGTTGAGCTGGATCGGGATCAGGATCG 8368 36 100.0 30 .................................... TCTGTTGTTTAATTTGTTTTAGATTGTTAC 8434 36 100.0 30 .................................... AAAATAGTTCGACGAAAAAGCCGAAAGAGA 8500 36 100.0 30 .................................... AAAATAGTTCGACGAAAAAGCCGAAAGAGA 8566 36 100.0 30 .................................... GCGGCCACGACCGCCATGGGTGTCAGCGCC 8632 36 100.0 30 .................................... TCGGATAACTTAGCGGCGGCGTATCCCTGC 8698 36 100.0 30 .................................... TACCGGGTGTTAAATCTGAATTAGAAGCGC 8764 36 100.0 30 .................................... TCATCAACATTTTCATCAACGCGACTAGTT 8830 36 100.0 30 .................................... ATAGTGACAGCATCTGTTTTCGGACCAATC 8896 36 100.0 30 .................................... GAGGCTTGCACTAGTGAGTTCAATCGTTAT 8962 36 100.0 30 .................................... TGTCCATACGAGCAGCGTTGGCACTTATTC 9028 36 100.0 30 .................................... GTATTATTATCAACGTCCCGCATTGCGTTA 9094 36 100.0 30 .................................... AGGATATATGAAATTAGTACATGTACTAGT 9160 36 100.0 30 .................................... ACGTCTTTCAGCCCAGTAAACTGCTCAAGT 9226 36 100.0 30 .................................... GGCCGGGTTAATCTTAATGTTTTATGTTCT 9292 36 100.0 30 .................................... CAATCAGAAAGAAGATGACGACTATAATGC 9358 36 100.0 30 .................................... GACTTATACCAGCAGTACCGAAGACGGTTA 9424 36 100.0 30 .................................... AACTGGGAGCGGTCAACACCCCAGGCTGTG 9490 36 97.2 30 .............T...................... GTGACGTGCTCCCATGTGACCCGAATTGAC 9556 36 100.0 30 .................................... GTGACGTGCTCCCATGTGACCCGAATTGAC 9622 36 100.0 30 .................................... CGACTCTAATGGATATTTTCAATCATAGCA 9688 36 97.2 30 ........................T........... GATGGTGCTGTTGCACGTGATCCCGCGCTT 9754 36 94.4 30 .......................G...........T AGCATAATGTATTATGTAACATATTATGTT 9820 36 75.0 0 ..........ACG.C..C.........T..C.C..T | AA [9841] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.6 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTGAACCGTCTTTTTCTAAAGAAAGTGCAGACCCAAATTATCAAGTTAATGGCTGATGATCGGCAAGTAGCGGTCTTAGATGAAAATCGTAAAGTAGTTTCGCAAGTAATGGAAGCCAGCTTCTTACTAGACTTACCGTTAGATGTTGACGAATCGCCTAGCCTAGAACAAATATTGAAGTTTACCGGTATTCACTTTCCGACGGAGCTTATGAATGACCCAAGGGCAATACTGGAGGCACTCGTTCAGACGCATGTTGAGCTGGGCTTGAAACAAAAACTGGTGTTGACTAATATCAGCCATTACTTAGATCAAAAACAATGGGCGAGCTTTGAGCAATTAGTGCATGATTTGGGCGCAACTGTCATTGTTATCGAATACTCAGAAATAAATCGAATGGAAAAGTTCAAAAATAGTTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATGAGTAAATGATGTTAAAATGCTG # Right flank : TACTAAAAAAGGCTCACCAACTAAAACAGGTTGGTGAGCCTTTTCGATTTATTGACTAATTACTAATCAATCACGCCATCTTTTCCCATCCATCGGAACCGAATAAACTTCCCGACCTCGGTCACAATCAAGACGACGATCCCACAGATAATCGGGATGCCCCAACCATACCAGAAGTTGATGCTAGTCGTATGGAAGACGGATTGCATGAATGGTAGGTAAATGATTCCCAGTTGTAAGAGAATCAGAATACCAATGATGTAGAACGCCATCTTATTTTGGAAGAAGTACTTGGAAATGACGGGGTGGTCATTCCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATGGTACTACCGACGACATTTGGTAATCCAAGTGCGGTCAAGTAGTTGTAGGCGAAGATCCCCAAGCCAGAAATTAGGAAGGAGACATAGCCGATTTCAAAGTAATCTAATTTTGACAACAACCCAGACTTAAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 384-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDIE01000081.1 Lactiplantibacillus plantarum strain dkp1 NODE_81_length_391_cov_0.69697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 383 38 100.0 28 ...................................... CGCTTCTAATTCAGATTTAACACCCGGT 317 38 97.4 28 ..................................A... CAGGGATACGCCGCCGCTAAGTTATCCG 251 38 100.0 28 ...................................... GCGCTGACCCCCATGGCGGTCGTGGCCG 185 38 92.1 28 C................................C...A AGTGGTCGCGTTGATGAAACTGTTGATG 119 38 100.0 28 ...................................... CGCTTCTAATTCAGATTTAACACCCGGT 53 38 97.4 0 ..................................A... | ========== ====== ====== ====== ====================================== ============================ ================== 6 38 97.8 28 AGTTCTAAACCTGTTTGATATGACTACTATTCAAGACG # Left flank : TGTTGAT # Right flank : GCAGGGATACGCCGCC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCTAAACCTGTTTGATATGACTACTATTCAAGACG # Alternate repeat : AGTTCTAAACCTGTTTGATATGACTACTATTCAAAACG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //