Array 1 2460-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEHL01000001.1 Yersinia kristensenii strain SCPM-O-B-8071 NODE_1_length_438880_cov_7.58116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2459 28 100.0 32 ............................ TCCCTGGTGGCGGGATAAGGCTAAGATCCTTT 2399 28 100.0 32 ............................ ATAACTGATCACCGGGCTTACCCAGTGGGCAC 2339 28 100.0 32 ............................ AATTCAACCACTCGGCCATCACCCGCAGCAAG 2279 28 100.0 32 ............................ ACGCCCTGATTATCAAAGAGGTGAGCTGAGAG 2219 28 100.0 32 ............................ TCAGGCTTACTCTGGGGATTGTTGGTGGGGGT 2159 28 100.0 32 ............................ CACAAAACAAGGCTATGGCACGTGGCCTAACT 2099 28 100.0 32 ............................ ATTGAGGGATTGTGCTCGAAAGACAACAGCAG 2039 28 100.0 32 ............................ CAAAGCATGACGGCAGAGGAGGCAATGCGCTC 1979 28 100.0 32 ............................ GTGAAAGATGGACGGAAAAAGTAATCGGTATC 1919 28 100.0 32 ............................ AGCAAATGAATCTACAGCGCTGGTTAGCATGT 1859 28 100.0 32 ............................ GCCAGCGGCAATGTGACAAGAGATGTGGAAAT 1799 28 100.0 32 ............................ CAGTAGCAAGACCAACAGTAGAGGTTATCCCA 1739 28 100.0 33 ............................ CTATTTGGAATCGGAAGCCACGCGCAATCTGAT 1678 28 100.0 32 ............................ CTGATCTCATCCAAGAGTCCATGTTTGAGTTC 1618 28 100.0 32 ............................ AGCAGCAAAATAACCAGCAACAAAGCAACAAC 1558 28 100.0 32 ............................ TACAGCGACTGGAAAGGCATCTCCGACGCCGC 1498 28 100.0 32 ............................ CTGTGATTGCATTTGATGCATTACCTGCAAAT 1438 28 100.0 32 ............................ TGGTATATCTCTGGAAGTCCACCTTCACCAAC 1378 28 100.0 32 ............................ GATATAGTAAAAGCTGAAAAAGGTCACATTTT 1318 28 100.0 32 ............................ AGTTCGGTATCGTCCTGGTACCACGGCTGAAT 1258 28 100.0 32 ............................ TGTAGCCTTTAGGCACATATATGACAAATTAC 1198 28 100.0 32 ............................ GAAATTAATGATGATAAATTCAGTAACTGACA 1138 28 100.0 32 ............................ TCACGCTGAGATAGCCCTTTAGTTTGGGGGGA 1078 28 100.0 32 ............................ AATAAACCCTTTTGGCTGGTCAAATATCTGAA 1018 28 100.0 32 ............................ GCGGGCGCTGCCGTAAATGCGCTATCTACGGT 958 28 100.0 32 ............................ TTGACCATGTCAGCGAATCACGGAAAGAGTCA 898 28 100.0 32 ............................ GAACGGGGAGAGAGTTAGACGCTGCCTTGGTA 838 28 100.0 32 ............................ GGGTGCGTAATCAATTTAACTTGCCGGGGCAA 778 28 100.0 32 ............................ GAATGACTCAGTTAAGTAGTCCCACAGCTTGC 718 28 100.0 32 ............................ AGCTTGTGCAAGTTTCTGTAACGCACCCACTA 658 28 100.0 32 ............................ ATAACCGGTTGGGCTTTTTGCATTTCTACATT 598 28 100.0 32 ............................ TCCATGCGCTCAAACTCAATTACCCAGCACCA 538 28 100.0 32 ............................ GAAACCGACAGCCGCATTGTGCCGGGGACTAT 478 28 100.0 32 ............................ CGCCCAGCATTTGACTCTAAAGCCGACGCCGC 418 28 100.0 32 ............................ AAGTGGAGTAACAGCAGCGCCCGGCATGCTGT 358 28 100.0 32 ............................ ACCCAGCAAAGCTCCGGCAATCGCCAGCGCCC 298 28 100.0 32 ............................ TCTTTGCCTTTTAGGGTGGTTTCCTGCGCGTT 238 28 100.0 32 ............................ TTGAAGCAATGAATCAGACGATGGCGACCACT 178 28 100.0 32 ............................ TGTGGCGGCGAATTGGCAGAATACGCAAGAAC 118 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : AATACCCAAGGGTTGGCCTGTCAGTTCTCACCCATTCCCTCCCGCACCGGGCCCTCATACCACACTGACCATGCGGACACAAAGCAGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14957-11325 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEHL01000001.1 Yersinia kristensenii strain SCPM-O-B-8071 NODE_1_length_438880_cov_7.58116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14956 28 100.0 32 ............................ ATGTGGCAGGAAGCCCATGAAATGGACGCCAG 14896 28 100.0 32 ............................ TCACATTTTATCAGCTTAGGCTATGACGGGAT 14836 28 100.0 32 ............................ TGCGTGACGCTGCTCAGGTGGAGAGACTTCGT 14776 28 100.0 32 ............................ AGGAACACCACGGCGTCAAGGAGGGCTAACGG 14716 28 100.0 32 ............................ AGCTAGCGAATCAAATGCTGCTGCCAGAGATT 14656 28 100.0 33 ............................ ACTGTGCAGCCGTTCGCTGTTGCTCGTATTGGT 14595 28 100.0 33 ............................ ACTACTGAAGGGCGCCTGGTCTACAGACTTCAA 14534 28 100.0 32 ............................ ATGTCAGACTCCAGTGATAATTGCGTAGTCGT 14474 28 100.0 32 ............................ TGTGGTCGCATGATTTCAAACCATTCGACATT 14414 28 100.0 32 ............................ AAATCGTATTTATCAAACTACGCGCTGGAAGA 14354 28 100.0 32 ............................ GCCAAAGTCACTCATGCCGCCATCCCCTTTCT 14294 28 100.0 32 ............................ AGGCGCAAGTAAATCAGACCAATCGACGGTAA 14234 28 100.0 32 ............................ TCGTCTGGCTTTAGCAGTCCCAAACAGTAAAC 14174 28 100.0 32 ............................ TCGTCATGTTCAGCTTTGCGCGTAGCTCGGCA 14114 28 100.0 32 ............................ AAGCCGAATTGGAACGTGGGCGTACTGAGGTT 14054 28 100.0 32 ............................ AATTGCAATCAAAGTAGCGCCGATGTTATGCG 13994 28 100.0 33 ............................ TATATAGTCCTGATGATGTTGTCAGGCTTAGAA 13933 28 100.0 32 ............................ AGTTGCCCGGCGAACCGGGCCATTCAGTTAAT 13873 28 100.0 32 ............................ ACCGGGATTGTTAACGCCCCCACTGAAATTAA 13813 28 100.0 32 ............................ ATCAGTGGAATTCCCAATTTATGATAGTGCTA 13753 28 100.0 32 ............................ ACGCCACTATCAGGCAGGCCCAGACCGAGCAG 13693 28 100.0 32 ............................ ATCCTGAATTCTACGCATTGCCACAACTGTGT 13633 28 100.0 32 ............................ AAGAAGGAAATCTAATGTCGAAGAAAGACGAT 13573 28 100.0 32 ............................ TGATGCCACAACTCAACCCTCCCAACTGGATA 13513 28 100.0 32 ............................ CGTAACAGATAATGACGTTTTAAAGATACCGT 13453 28 100.0 32 ............................ AGACAGGAATTGTGGCAACGTGCAGGTCTGAA 13393 28 100.0 32 ............................ ACTTCTACGGAGGGGGCTAGATCAAATTAACC 13333 28 100.0 32 ............................ AATGGGGCGGTACTGATGGCGATACCCAATCA 13273 28 100.0 32 ............................ GTGAAAAATTGCCGTTTGGCTCTAAAGCATAT 13213 28 100.0 32 ............................ GTTCGAATATGCACACTGACGAGTACAGCATC 13153 28 100.0 32 ............................ ATTAGTGCCGCTGGAGCATAAAAACCCGGCAT 13093 28 100.0 32 ............................ AATTAAGGAGGTATGATTTTACAGATTTGCAT 13033 28 100.0 32 ............................ GATTTGATGTAATTGTCTGGTCGAGAGTGGCT 12973 28 100.0 32 ............................ TCACAGACCAGCAAGACCGCCACGAACAAACC 12913 28 100.0 32 ............................ ATCACGGTTCTGGATGGCTGTGACGACATTTC 12853 28 100.0 32 ............................ AGTGAAATCGCCGCCGCGCATACGCTGTACAG 12793 28 100.0 32 ............................ ATCAGAGTGAGCAGAGGGAGGAATGTATCAGC 12733 28 100.0 32 ............................ ACATGGATCAGGTCACCGTCCATATTCACATC 12673 28 100.0 32 ............................ GTTTGATGTGTTGTTCTACGCCAAGGCTGGGG 12613 28 100.0 32 ............................ CTGGCGGCGCATCTGAAACTGGCGCTTATGCA 12553 28 100.0 32 ............................ ATGACGCCAGTGCGAAGAGCTATACCGAACAT 12493 28 100.0 32 ............................ GACTTGTGGCTGGTCTGTCCGGAAACCAGTAT 12433 28 96.4 32 .......T.................... ACGTGTTCGGGACGCTTTCCTACATATCCAAC 12373 28 100.0 32 ............................ GTAAACACCCCCGGATTACCGACATCAATCAC 12313 28 100.0 32 ............................ CGATTGAGCGCAAAGCATCTTCGGCGCTCATG 12253 28 100.0 32 ............................ TGACTGGTTCCCGCTGGCGCAAAAAGCGAATA 12193 28 100.0 32 ............................ CATACTCGCCGCTTGAGGTTCAGGTAAGTTCT 12133 28 100.0 33 ............................ CGATAAGAGCAACAATTTTTTTATTTTTCTTTT 12072 28 100.0 32 ............................ TCTTTCCCGGCTAATGCCATCTTGATCACCCG 12012 28 100.0 32 ............................ TCTGTGTTCTGCAACCCATGTCACTATCAGTG 11952 28 100.0 32 ............................ ATGCAGCTAGCCACCTTTGCCACAGTCATTTA 11892 28 100.0 32 ............................ CAAATCACGACGAGCCATAACCGGGTATGATG 11832 28 100.0 32 ............................ TAGTTGAGTGAGGGAGAGTCCCGCGCAAATAA 11772 28 100.0 32 ............................ CGTCAACGAATCAAAGCTCTTGAAGATGCACT 11712 28 100.0 32 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATAC 11652 28 100.0 32 ............................ TTGCGCCGCTCATCAATCTCATAATCATCACG 11592 28 100.0 32 ............................ CTTGCCGATGGTGCGTTGCTTTAAGGTCTTGA 11532 28 100.0 32 ............................ CGTCAACGAATCAAAGCTCTTGAAGATGCACT 11472 28 100.0 32 ............................ TCACGGCATGAATTAAATACAGAATAACACGC 11412 28 100.0 32 ............................ GCTAAAATTATTATATCTAATGCTTAAAACAT 11352 28 78.6 0 .....................AGCATC. | ========== ====== ====== ====== ============================ ================================= ================== 61 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCACCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTGCCTTAATCTCAACTTGAACCCTTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTTTTAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTATCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTAGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATTCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //