Array 1 521234-520586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 521233 30 93.3 36 .G..................G......... CCACGGAAAACCGAGTTTTAGACTTTGGTTGTCTTC 521167 30 96.7 37 ....................G......... CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 521100 30 100.0 39 .............................. CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 521031 30 100.0 36 .............................. TCTCACTTTCACTGATTCTGAAGAGAAACGGTGCGT 520965 30 100.0 36 .............................. CACCTGAGGATATATCAGAGGAGGAAAGAGAGTTTA 520899 30 100.0 36 .............................. TGCCGTACCTTTATTGTGCTGAAACATATATAGGTA 520833 30 100.0 34 .............................. ACGGGAGTCTTAGTGCCGAAGAGCTGTGATAGGA 520769 30 100.0 42 .............................. GGGTTATGTAGCCCCTCCCTCCCCAAGGACGTTGGATTCTAG C [520758] 520696 30 93.3 45 T...T......................... CCCCTCCCCCCAGGTTTTTAATTCTTTCTTGGTTTCCAACCCTTG T,T,C [520669,520681,520685] 520618 30 90.0 0 ..............T.......TA...... | G,C,A [520598,520606,520611] ========== ====== ====== ====== ============================== ============================================= ================== 10 30 97.3 38 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGACCGACGATCTCTTTCCTTCTTGCCCAGAGAACCACTTCTTCTCCGTTTTCATGCAGTATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CCCGGTGAGTTTCAAGAGAAATTATACCCACAAACACAATCTGAAAGGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGAACTTACGCATCATCGATTACCACAAATTCTCTTCGTATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCTACTTTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 533397-534572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 533397 30 93.3 37 ......G.............G......... TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT 533464 30 100.0 36 .............................. TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG 533530 30 100.0 36 .............................. CCTGCTTAACGATATTATCTCAACAAAGCTTCTGGA 533596 30 100.0 35 .............................. CTTAGGTCGTACCAATTAACACCATCTATTTTGCA 533661 30 100.0 36 .............................. CGATGTCGCCGCCAAGTATTTCAGGGGTTTATCGGA 533727 30 100.0 36 .............................. ATTCCCTATGCCTCTTGACATCTATAGCTATTCATG 533793 30 100.0 36 .............................. TGTTCTGTTGTGGGATCGTATTTGAACTCACTCTCT 533859 30 100.0 40 .............................. GTGGGAAGGCGTGGACGTCATATTCATCGCACATTCCGCG 533929 30 93.3 38 TC............................ CGTGCTTGATGTCGTAGGCATCAGGGTTATGATGCCGA G [533944] 533998 30 100.0 40 .............................. GTCGATGTTCTTTAGGCGGATATAGATTTATCTCTACTTC 534068 30 100.0 41 .............................. TGCTCTTCTGCCCCGGGGTACACAAAAATAAGTGTTGGCCG 534139 30 100.0 38 .............................. CTGGCAGGAATGTATGCACCCGCCGCCCACAACTCCAG 534207 30 100.0 37 .............................. CACCCGCAAGAGCACAGTCTATTACGCAGACAATTTT 534274 30 100.0 37 .............................. ATGTATCAGTAGAAGGAAATTATGTAAGTCCATATGA 534341 30 93.3 37 ..........................TT.. CCTCCACGTTGGGATTGGGATACCTCAAAGGGAATAT 534408 30 100.0 37 .............................. CTGGTAAGTTTCATTGTAGATAAGGTATTCTTACACC 534475 30 93.3 37 ..........................T..A CTCCTACCGGTAAATGGTTCTTCGTTGTTCTCATCTT 534542 30 100.0 0 .............................. | T [534553] ========== ====== ====== ====== ============================== ========================================= ================== 18 30 98.5 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTTATCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTATCACAAATTCTCTTCGTATTGTCTCTTCATATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTATATCTATCTTCCAGTGCCAGATACACACATCACCTACTTTGTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 566438-567196 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 566438 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 566503 30 100.0 36 .............................. AATTTGAGCCCGGGGAGGAGGATTTCGAATGGCTAC 566569 30 100.0 37 .............................. GGGTAGAAGTTCCTGTTAATAGAGCTCAAGCCACACT 566636 30 100.0 35 .............................. CAACTGGACGAACTCGCCGAAAGTCATAAAATGCA 566701 30 100.0 36 .............................. TCATCCCTCTGTAGATGAAAAATCTCAGAAAGCTCA 566767 30 100.0 36 .............................. TAGGTTGGGTGGTGTAGAATTTGACCTTTACCAGCA 566833 30 100.0 36 .............................. GTTGGAAAGAGACGAAGAACTTATCAACATGATCAT 566899 30 100.0 36 .............................. TAAACGCAAGAGTCGAAAAAGGTATCAAGAAAACCA 566965 30 100.0 38 .............................. AGGAGGCGGTATTATGAAGTTGAGAGTGTATCGTATGT 567033 30 100.0 38 .............................. GTTGTTAACTGGGCACGAGACTATTACTACTCATACCA 567101 30 100.0 36 .............................. TCTTCATCGAAAACACTTCTGCAAACAAGGGTGTTA 567167 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.2 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGTTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACACATCACCTACTTTGTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 4 925401-926563 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 925401 30 80.0 37 T...T.G...A.T.......G......... AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA 925468 30 100.0 36 .............................. AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 925534 30 100.0 37 .............................. ATAGGCTGGACAGGTGCATAGGCCTCTTCGAGTTCGA 925601 30 100.0 37 .............................. CTGTCGAATCTTATTTTTGCTTTTCCTTGCAATACAT 925668 30 100.0 36 .............................. TTACTCAAAGAGACATGCGCGAAATTATCCAAGGGT 925734 30 100.0 37 .............................. GCTATTATGGTAGTAATTATAGATCTGTGTATCAGAT 925801 30 100.0 42 .............................. TGTTCGTGAAACCCGAGTGGCTCATGGGTTGGCTACTCAACT 925873 30 100.0 35 .............................. TTGGAGAGAGCAAGAGGCAAATACTACTACATGGT 925938 30 100.0 36 .............................. AAGCAATTCCTGGAAGAGGGGGGAGATGATGCTTAA 926004 30 100.0 35 .............................. GGCGCTAATGTCTTGACAAAGTTTGTCTCCAAAGG 926069 30 100.0 36 .............................. TCGAGTTTCGTAGTATATTCCAAAAATTCTTCGCCG 926135 30 100.0 36 .............................. AGTAACCTACAAATTGAAGTAGAAGGAGGTGTTGCA 926201 30 100.0 38 .............................. ACGTTTCTTACACCTCTTCTCGAAGGTTCAGTCTTTCT 926269 30 100.0 36 .............................. TACGTTAACATAAAATCCCCCCCTTCGATTATAAAT 926335 30 100.0 36 .............................. TAAAGAAATGGTTGGAAGGCGGTGACGAGTATGAAG 926401 30 100.0 37 .............................. TCTTGTGAACAACCTCGTTTCCGGAACACAGAACAAG 926468 30 100.0 36 .............................. GTTTTACAAAAAAGAATATTTTTTCAAAATCAACCG 926534 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 18 30 98.9 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTGGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGATTTGTAGAGTTTGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATATGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTAT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGAGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTTGAATTCAAAGCGCTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 5 1030235-1032503 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1030235 29 100.0 36 ............................. GCTTACTTCTTTGCATAAGTAGTTCTGGGAACTCCA 1030300 29 100.0 37 ............................. GATCGATGCCGATTTGCACTTTGTGTTCTGTTTTTTT 1030366 29 100.0 36 ............................. GACGGCACTGTGTTTCTGCACGGGAGGGCTGTAGTC 1030431 29 100.0 37 ............................. GCAGAAAAAGTTCGAACATCTTTCTGACCACAACTGC 1030497 29 100.0 38 ............................. AGAATTTCAGCTATTTTGTACTGTGAAAGACCCATTTT 1030564 29 100.0 36 ............................. GATCCTTGTTGAATGGAAATTACTTGACTGGTTAAG 1030629 29 100.0 37 ............................. GATATACCCAGTGAAGGCATACGTTTCTCGATACGAA 1030695 29 100.0 37 ............................. ATGACGAATGCCAGGATTGAGAGGACAGCGATGCTGA 1030761 29 100.0 35 ............................. GCAGATCACAGGTATAAGCGATGTGGACATACTGA 1030825 29 100.0 36 ............................. ACTATATGTGGTATTCTATTTTTAAAGAACACAATA 1030890 29 100.0 37 ............................. GCTCCTAAAGCAAAGAGATCGTAGTACCATGTGTAGG 1030956 29 100.0 36 ............................. TAGAAAAATATGTACCAGAGGAGAAACTCAAAAGAA 1031021 29 100.0 38 ............................. GCTGGAACATACGAAACGATCTCCCTTTCGGACTACGC 1031088 29 100.0 36 ............................. ACACCTTTGAAATTCGAATGTCAGATCGTTTCAATC 1031153 29 100.0 39 ............................. GACATAGACACAACACGAAGTTTCATAGGAAGGGTACTG 1031221 29 100.0 37 ............................. AATGGAAACACCTGTAGCTTGAGAGTGAGAGTCTTTC 1031287 29 100.0 36 ............................. CCTTCATCTCCCTCCTTTTGCTTCTCCTCTCTGTAT 1031352 29 100.0 35 ............................. AAAATGGCCTCTCTTGCTTGCTCTTTTTCTTCCTC 1031416 29 100.0 37 ............................. TATGTCGGCGTTTTCGAAAAGATCGTAGTCACCCCTG 1031482 29 100.0 37 ............................. TTTCTGTGTAAGCTTCTTGATCTCCTGTTCGATATTA 1031548 29 100.0 37 ............................. TCCACAGAGCAAAAGCGAATCTGAATGAGAAAGGAAG 1031614 29 100.0 36 ............................. TTTCGTCGTAGACAACTATCTCTCTTTTTACTGTCA 1031679 29 100.0 36 ............................. CTTTTCATAGACGATGTGGACACTGAAGGGAAAAGA 1031744 29 100.0 37 ............................. GTGATCTGCTGGGTGATGTACTTTCCGATCGAAAAGG 1031810 29 100.0 37 ............................. TATAATTCGAGAGTTAATTCTGTAGATGTTATGCTCA 1031876 29 100.0 37 ............................. CCGGGCAATTGTAATGGAGGTTGCAGAGGACGGTGCA 1031942 29 100.0 37 ............................. CATCAACACATACACCGATCTCTATTTGTATGTCGAA 1032008 29 100.0 39 ............................. TATGGCGCCGTCAACGCCGAATAGCGGTTATCAATCCAA 1032076 29 100.0 37 ............................. ATTGGCTATATTCGCAAATCGCCTATATCCCTTGGCC 1032142 29 100.0 37 ............................. TGTGGAGACCGTTAGCAAGCCTGCGATTGACAACTAC 1032208 29 100.0 37 ............................. GCGAGTTGAAATTTCCCTACAAAGAATGGAAGGGAGC 1032274 29 100.0 37 ............................. ATCAAAACAAGCAGTAACCGAAACCGCACAGCCTACT 1032340 29 93.1 38 AG........................... TCGGAAAGCCCCAATTTGATATGAGTAGTAATAGCCTC 1032407 29 96.6 37 ............................T GGCGTGATGTGATAGATGGAAAGGTGAACCACTGCTA 1032473 29 82.8 0 T........C.........A.....A..T | T,C [1032488,1032496] ========== ====== ====== ====== ============================= ======================================= ================== 35 29 99.2 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : CAACAAACAGTTCTTCATAGAAAGCTGAAGAGAAAGGTTAAATATCAATCTTTCATAAGATTGGAGGCTTATAAAATAATCAAACATCTGCTTGGAGAAGATGAGTACAGGCCTCTCAAAGTCTGGTGGTAGGTGATATCAATGAGGGTAATTTTGGTTTACGACATTTCTACTGAGACAAAAGAAGGAGTGAGGCGATTAAACAGAGTAAGGAAAATAGCTAGAAGATATCTAGACCATGTTCAAAAGTCAGTTTTTGAAGGTGAACTAACGGAGGGAGAAATCGAGAAACTGAAATTTGAACTACAATGCATCATTGATAATGACGAAGACTTTGTGATAATTTACAAAATGCCACCTTCTATTATGATAGAAAGAGACATCCTGACCAACACGGACGATCCAACATCTAATTTCATTTAAACAAAACCGGAGGTTTGACGCAATACTCATCTAACAAATGTTCTATAATGTGTTTTTTTACTGAAAAGCTGAATGCG # Right flank : TCAATAAGAATTCCCGCATCAAGCGGGGCTTTTTTCTTACACATTTTTTGAAATCTGTACTCAAGGGGGATGGATGGGATATCAAGCAAGACAAGAAAAAAATTAAAAACGAACTTTTGTTGGAAAGAGAGTTTCTGTTAGAGGGAAAATCAAAGTGTTTGGTACCACAGGAAGTCCTTTCTCGAAAAAAACAATTCTTATAACAACTGTGAGGTATTTAGATAAAAAGATCAAGATAGATCATCTGTGGGTTTCGATCAAAAAAGGCACTGAAAATATGGATAAGAATTTTATAACCCTTTGAAATGCGCTTTTGAGAGTTCTTTAAGGAGGTGTTTGGTACGATGATTTTTGTGGGAGATATCAGCACGCTGGATATGTGCAGGCGTAATCATGCGGGAGAAATTAAGCTCAAAGATGTCCTGACTAAGAACGAGGGATTGCAACGTCTTCAGAAGCTAAGATGGTGGTACCTGTACGAGGTACCAGCGACCATGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 1171015-1169718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1171014 30 100.0 36 .............................. ATATCACCTTACAAGACAAAAACGAAGACAAAATTT 1170948 30 100.0 36 .............................. TCAGGCTGACTGACAAAATGAATAGACTTGAGAAAT 1170882 30 100.0 36 .............................. CGACAATGAATCCATCACGGGTTTTCAGAACGCACT 1170816 30 100.0 37 .............................. ACAAAAACGTTTCCCAAATCTCTCAGCATTCCCACCG 1170749 30 100.0 38 .............................. AATGAAAGCCCAGAGTAGCGGGAAAGCCCCCGAAAAAA 1170681 30 100.0 36 .............................. CGTCAAAGCCCTAGCGTGCGACCTCGTTGCTGTAGC 1170615 30 100.0 37 .............................. AAGATGCATTACAACTGTATAGAGAACTCTTACCAGG 1170548 30 100.0 36 .............................. AGATTCGAGCAAGATTTGGCCATATGGTCGAAGCAA 1170482 30 100.0 36 .............................. TGGTTCAGAGTATGGCAAAACCATCTGAAATACAAA 1170416 30 100.0 37 .............................. TAGTCCAAAGCCCTTGCATGGTCAAAGCCTATGCCGT 1170349 30 100.0 39 .............................. CCCGTGACCTTGTGAAGCGCAATTCGATGACATACGTTT 1170280 30 100.0 38 .............................. TAGCCGCCTATTGCCTATTTTGTAACGTAGATGTAACT 1170212 30 96.7 37 ................A............. AAGCCGAGTGGGAAAAGCTCGCAGAAGAAGAGCCGAC 1170145 30 100.0 38 .............................. TTTTGCGTCCTTTGTTGGTTCTATCTCAAATGTGAAGA 1170077 30 100.0 36 .............................. TGATGAAGTTGGATTCAATATCGTAAAAGTCAACGC 1170011 30 100.0 38 .............................. ACATGAAAGTAGTTGAAAATGGCTGTGGAATGGTGCTA 1169943 30 100.0 36 .............................. GTCTCGACCGTGATCTTTCACATAAAACGTTCCGTG 1169877 30 100.0 35 .............................. AGAGATAAACACCTATTACAATCTCTACTCGGGAG 1169812 30 100.0 35 .............................. TGAAGTGTATGCAACAGAACGAACTTTTTGGAATC 1169747 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.8 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : AAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGTGATGGAAACTTCAAGGGCTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAGAGAAATAAAAAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAATACAGAATAAAGCTTCCACCAACGATCTATGGATTTGAGGAACTCCGATGCAAAAACGAGAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAGACGAAAAAGGACAGTTTATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAAATCTGGAGTATTTGAGAAATCTACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTCTTTTTATTTTATAACCCTTTAAAAGCTTATGTGAACTTGGTTAATGTTTCTATACCTCAAATCAGGCCCGTTAGAGCCGG # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTTATCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGATGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCTAATTAAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATAAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 7 1271815-1272250 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1271815 30 70.0 37 TG...TG.......G.A..TGC........ TGATTCAATATCGTGGGCCACGACTACAGGGGGAAGC T [1271818] 1271883 30 96.7 36 ....................G......... GAACAGGCAGTTGGTAGACCCCACAGAACGGCGCGT A [1271896] 1271950 30 100.0 37 .............................. TGTGCCATTTGCCAATTTCTGCACTTAGATCGAATCC 1272017 30 100.0 36 .............................. TCAGCGTGTTCTTCGTGTGTTTCAACTTTTCAACTA 1272083 30 100.0 36 .............................. TTGAAGTCTGGGTAGGAGAACCGTACGAAATAATCA 1272149 30 100.0 42 .............................. TGTGCCCCCACCATGTATAGCCACGAAATCTTCGTGACACCA 1272221 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 7 30 95.2 38 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAGGAAACAGGTACTGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAATATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCGTCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGGATTTT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACACATCACCCACTTTGTGA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 8 1364644-1364282 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003409.1 Thermotoga sp. Cell2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1364643 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 1364577 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 1364511 30 100.0 37 .............................. GAGAGATAAGAAAGAAGTGGTATCAGAACAGCTCGAG 1364444 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 1364377 30 100.0 36 .............................. GCGGTATAGCGTCGGTACTAGACATAACGTATTCCG 1364311 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.5 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCCTCGCAGAAAGTCTGAAAATATCCGGACTACTTCCCGCTCTTGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGGCTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCAATGTATCCCATCGATTCCATGCCAAACTGGATGAAGGCTCTTGCCTACATAAATCCCCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCCTTCGGCCTCGATTGGGGAATTCTCTCGATCTTGATGCTGGTAGGGCTCATCCTCGCAATGGAAAGCTTCGAAAGAGCAAGGATAAGTTGAGATATCAACAGCAAAAACGAAGGCAGGGGGTTTCCCTGCCTTTTTGTTTTTTTATGGAGCTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGAGGTGTTTTTGGTGAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCCACTTTGTGAA # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //