Array 1 279383-279849 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR735026.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 279383 36 100.0 36 .................................... TCGAGCATGGTCTGGGAACCCGCCGCGTTTGACACT 279455 36 100.0 35 .................................... TGTTGATTAAGACGGATAAAGAGAACTCTAATCTA 279526 36 100.0 36 .................................... AAATCCCCCTCACCCTTTGCTACCTATGCCAACGCC 279598 36 100.0 35 .................................... TGAAATTTCTCTTGGGCGTTGGTTGTCGATTGGGA 279669 36 100.0 38 .................................... GTGAGGTTGTCTCAACGGGTGCAGGGAGTCTAATCAAG 279743 36 100.0 35 .................................... AGATGGGAGAAGAAATCTTCTCCCATCTTTTTAAA 279814 36 86.1 0 C.......G.TC.....................T.. | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 98.0 36 GTGATTTTACCTTTGATGCCGTTAGGCGTTGATCAC # Left flank : TTTGCCGGGGATAATAACTTTTTATTTGATGAAATTGAACCCCTAGAAACCCCTCCTTTAGCAAGATGGTATTATCCTTATGAAGATAACAGTATTCCTGCTTCTGGAGTTTGTCGGTTAACAATTTGGATTGATCGAGCAGATAATACAAAAACTCAAACTGCTGTTTTTATTCCTAGTCATTTTGTTAACTATCCTCCTGACCAAGCCTGGGTTAAAATTCCTATTGGTTAGGGATTTTGCAAGCATCTCTGACCGTTTGCATAATTTGGGGGTGGTTGGGACAGCAAACCCTTATCTGGCTTTGGTTTTGGCTCTTTGTTAGGGGTCGGAGGTGCTTGCATTTTTCCTAAACTACTACCAATAAAGGGTTTCAGCGTTTTTGAAGGGGTCAATTTTTCGAGTTTTGTTCTCTATTTTGGGGGTTGATCATGTTTTTTGTGGAGGTGCTTGTATTTTCTTTCGGGAGGCTATACGATAAAGGCAACACAGCCCCCGCC # Right flank : CTTACAGAAACGATAATTCCCCGATCACATCTAAACGTTTAAAGTCACTCAGCGCTAAGAATTTTTCCGAGAGGGTTTCCGCGATGGTGGGTGTAATCCAGCCCATTTGTTGCAATAGATGAATCGCCGTGGCGTATTTAGCCCGATGAGCCCCATCCATAACTTTAATTGCTAATCCCAAACCTTCGCCCACCCGTCCGACACACTGCACCCCTTCCGCCCCGGACTTGCTGACCAGTTCTCCTTCGGTTAAACGCATTAATTCCGTATCAAAATGTCCCTCTCCCGCCACCATTTCGGGATGATGGGTCATGGCCCGGACAATCCGTTCCCGGTCTAGGTTATCTCCAGAAGCCAATTGAGCATAGAGTATCCCCATTTGACCCAATTCCAGATAATAGGTGGGTGCGCCGCAGTCATCCCGAGCACCGAGGAACTCATCGGGGGGTAGTCCTAATAACTCCCCAACTTTACCAATAATCAGTTGTTGCAGAGGATGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTTTACCTTTGATGCCGTTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 106058-106388 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR735016.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 106058 38 100.0 36 ...................................... AATTTGCCCGGATTGCAACGGAACGGGCTATAAAAA 106132 38 100.0 36 ...................................... ATAGTGTTAACAGGTGTCTACAATGTCTACACTATT 106206 38 100.0 35 ...................................... ATCCCCACGAATTAAGGGGTAATGTCCATGATGAT 106279 38 97.4 34 G..................................... AATGAGTCTATAAATAGGGAAGTATCCTTGGATA 106351 38 97.4 0 T..................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 99.0 36 AGTTTCAGTCCCGCAAGCGGGATTATTTTAATTGAAAG # Left flank : AAATAATGCAACTTTAGTTAGTCAAATGGGAGATTTAACCGCAACGGAAAACGAATATATTGTGGTGACGTTGGTAGTTGGAACTTTAGGAAAAATTGAACTTCCTAAAGTGAATAGTCCTGAAACTTTACGTCAAGCATTAAGTCGTTTAGGTTCGGTTGGGAGTGAACAATTATTAGCTGTAGAAATTCTCTGGACACCTCAAGCCAGTGGAGATACTCTCAGCACTGATGATATGTTGGCATATTATCCCGATTTAAGCTTAGTTTAATCTTTAGGGTGGCTTATGCCACCTTTTTAATGATCATTTTTAAATGATTACAACCTCGGCGCGGATTGCTATAGCAGGGAACAGGGAACACCGCAGGAAAAGATTTCTCTGTTTAGGTTTGCTACATCAGTCTATGTCCTAATTACCAGGCGCGACTGCTATATAAAAATTATCAATGATTTTATTAATAATGTTGTTGCGCTTCAGCGCATTCTGGTTGTTGCCGATA # Right flank : GTCTGCCGTCTGAAACCTTTATGGGGCGGTGATTCTGAAGCCACTTTTCGTGAACCTCAAAAATTGCCTCATTTGGGCTCCCGTTATTGCAATAGACTATCAATAACTAACCGGACTCAAAAATATAAACTATTGATTTGTCAAGGTTCTAATGTTTTTCGTGAACCCCCCAGGTTTTAGCCCCCGCTTAGGCTCACGAAAATCATACAATTTATATTAAGTCCCCTGACCCCAATACACAAGTAAACGTTTTAATTCTTTACAATATGTACAGACCTATAATTGATAGTCTAATTCTTGACTGGTTAGCTGTATTTGGATATTTGAGTTTTCTATTGTTTGTGACCTGGAAAGTTGTAACCACCCCAAAGAAATCAGAATAATCCTGTTGATTTAAAAAAACCTCCTTTTTTTGGGTTGATTTGTTTAACTTCAACCCATTTAATTTTGATATAAAGGTAATATTAGGTATGTTTTAAGATGCGCTGAAGCGCAACAAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCAGTCCCGCAAGCGGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 256064-254971 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR735018.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 256063 37 97.3 39 ...A................................. TTATGATCATGTTGTTAATGATTATTCCTTTGATAATCC AA [256058] 255985 37 100.0 43 ..................................... CTCTATTCGCATTTGCTGATAAAATCTCCCTCCCTATAGTTCC 255905 37 100.0 39 ..................................... AGAACAGCGTAAAAATACGGATTTATCAATCTAAGCTGA 255829 37 100.0 35 ..................................... CTCTAAAAAAGTAGGCTGTTCTGATGGATAGATTT 255757 37 100.0 36 ..................................... GGTGAATGTAATCTAGGATTCCTTTGGGTTTCATAA 255684 37 100.0 34 ..................................... TATTGTTGATTGAGCAAGCAAAATCAACTTTTAA 255613 37 100.0 41 ..................................... TTTCGGAATGCTAACAGCAACCCTCTACTTTATGAAAAGTC 255535 37 100.0 37 ..................................... CTTGGAAGTTCGGACTGGGATAATATACCTTCATATA 255461 37 100.0 38 ..................................... CTGATGCCAGCCATCGGCACTCAGGGAACGATTGCTCT 255386 37 100.0 35 ..................................... CCCAAGCTCATTGGTAGAAGTGTCGTAGCTGATGT 255314 37 100.0 37 ..................................... AAACGAGTCGATTCAATTTTTGATTCCCCGGCTAGGA 255240 37 100.0 39 ..................................... GATAGTAGGGTTGTTATCCCCAAATTCCCTTGATTGCGG 255164 37 100.0 37 ..................................... ATTTATTACTGATGTTTTTCTAAGTCTCTTACTTTTT 255090 37 100.0 46 ..................................... CGGTTTACCCCCCCCTTGGCAGGGTGCAACACTAGGAAAAAAATCC 255007 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 15 37 99.8 38 GTTTCAGTCCCGCAAGCGGGATTATTTTAATTGAAAC # Left flank : TTATATCCAATAAAATGATAAAAAACCTTCCTGTTCCCTATTCCGGTATTCCCTTACTCTCAATCAGATTCTATTCAATAAAATGACAAAAAATAAAATGATTTTGGGGTTTGATCCCGGTCGAGAAAAATGTGGAATTGCGGTGATGGGTAATGATTCCCAGTTATATTATCATCAGGTGATTTTGGCGGCGGATGTTCCTACAATCATTGAATCTCTTTGTCAACAATTTACAATTGAAATAGTGGTGATGGGAGATCAAACCACTTCCAAAATGTGGAAACAAAAACTCACGGAAATTTTACCGAAATCCTTATCTATTCTTCAAGTGAATGAACGATATTCTACTTTAGAAGCGCGCGATCGCTATTGGCAACTTTATCCCCCCAAGGGTTTAACTCGTTTGATTCCCAAGGGAATGCGAACCCCACCCCGTCCGATTGATGATATTGTTGCGATTGTGTTAATTGAACGATATTTGAATCAGTCATCAGTCATTA # Right flank : TCTGCCGTTTGAAAGCCTTATGGGGCGGTGATTCTGAAGCCCATTTTCGTGAACCTCAAAAATTACCTCATTTGGGCCCTCATTATTGAAATAGATTATCAATAACTAACCAGACCCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGATTTCGCCCCCGCTTAGGTTCACGAAAATCATAATAAACCGAAACAATTTTCTTGTCAAGGGGAATCTTAATAGCAGTTGCCGCATCTATTAAGACATTCTTGAAAGCTAAAAGCTGCCCATAACCTATTACCTATTGCCCATTGCCCATTCCCTATTGCCTCTTGTATGATATTGCGATCGCCCTTAACTTTTAACAATTGCCCCAAAATCCGCTAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTGCGTTGAATATTGGAATCATCATCCATTACTAAAACACTTTCAGGGCCATCAAAAAAGCTGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCGGGATTATTTTAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 2 542538-542846 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR735018.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================== ================== 542538 27 96.3 30 ....C...................... CCTAATATTTCAGACCTTCAAAGACAAGGG 542595 27 100.0 30 ........................... TCTGATAGTTCTGCAATTCAACGGGAAGGA 542652 27 100.0 30 ........................... GCTGATAGTTCTGCTATTCAACGAGAAGGG 542709 27 100.0 30 ........................... GCTGATAGTTCTAATATTCAACGAGAAGGG 542766 27 88.9 27 ........A......A....G...... CCTGATAGTTCTAATATTCAACGAGAG 542820 27 88.9 0 .G......A......A........... | ========== ====== ====== ====== =========================== ============================== ================== 6 27 95.7 30 GAAGAAGAGGAAGAAGTTCAAGCTAAA # Left flank : AACTGTTTTTGATTATACTGAAGTCTATTTGATTTTCAAACTTTTTTTTGATAGAATCAACTAAGGATTGATCGTTTCTAATGTATTGGGAATCAAGCAATGGGGTCTGTACGATGAAAATACAACTAAAAAAACAGAATCGCCATGAAGTAGAATCTGTCAATCAAACCGGAATTCAAGCGAAATCCCTAACAGGTATTCGCCCCATAGACAGTGCCTTCGCAGCCCCACAGAAGCCCCAAACCGAAGAAATAAACCATCAGCAAATACAGAAAAAACAGGGCTTTAATTTTGCTGAAATCCCGATTTCAGGAAAGACAGAGGGGTCAGCAGCCAGAATACAACCTAAATTTAATTTATCCCTACAAAAAAAATTAACCGTCGGTCAAGCTGGGGACAAATATGAACAGGAAGCGGATAGTGTAGCTGAAAAAGTGGTCAAACAAATTAATACTCCTACTACAGAAAAAGCCACATCTTCTAAAGGAGTACAACGTCAG # Right flank : ACCCCAAAATAAATCCCTGGGTGGGGGTGCAGTTTCAACAGATATAGAAACAACAATTCAAAGTGCTAAAAGTGGTGGAAGTCCCCTAGATGCGGGAATGCAACGCAAGATGGGAAAAGCAATGGGGGCTGATTTTAGTGGAGTGAAAGTACATACTGATAGTCAATCAGATAAATTGAATCGTTCCCTAAGTTCTCGTGCCTTTGCAACGGGGCCAAATTTGTTTTTTAAACGGGGAGAATATAATCCAGGAAGTCGAAGTGGACAGGAATTAATTGCCCATGAATTAACCCATGTTGTGCAGCAGGGGGCAAGTAAAATTCAATCAAAAAGAGAATCTTTCTCTAATGTCAAGATCTCATACCAGCTACAAATGAAACCTGTTTTGGTGAAGGAAAAAACTGAGGCAAGAACTCAGGATGATAAGAAAATTAAAGATAATAAACCTTATGAAAAAGGTAACATTGTTGAAATCAGTGATAATAATGATGATCATAAAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.02, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAAGAGGAAGAAGTTCAAGCTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 32997-32582 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR735002.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 32996 37 89.5 35 A...T-......................A......... TCCTTATTCTTAAAAGAATAGGTTTGAGTCTGAAC 32924 38 97.4 36 .....................................A ATTAATTCAAACCTATCCACGGGAGAAATAATGGCA 32850 38 100.0 40 ...................................... TAGGATCTGTTACTAGATTTAAAGAAGGGCCTCAAATCGT 32772 38 100.0 39 ...................................... CCTCTATGTGAATCTTCCTCTAGTTTTATATTATTTCAA 32695 38 100.0 38 ...................................... CCTTTTGATGATGGTGTCGGTAGCTACCCATTCAATAA 32619 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 6 38 97.8 38 GTTTCAGTCCCGCAAGCGGGATTATTTTTATTGAAACT # Left flank : ATGAGAATCTTGTGCAATCTGTTGCATCGGGTTGGCATCCTGAAAGCGTTAAAATTAGCAGTTTTGCTGAAATTACTGATATTTTATCATGGAATAATACTAAAAATGAATCTTTAATTAATTCCTTAATAAAATATCATATTTGGAATCAAGCATTTATTCGCGATCGCCTGCAATATAAACCCCATAAACCGCTTTATATTTTATTATTGAGAACCTATAAACTCTCTCAAATTTATGATATTCCCTATCATCCCAGTTATGGAGGATGTCGCTCTTGGATTGAGTTACAAGAAATGATTTCATTAGAAAATATAGCTCCGGTTTTAACTCAAGAAGACTACGATCAACAAGTATCAACTATCCATCAAATTCTTCAATCCTCGTAGTAAGGCGTTCACGCCTCTATTCTTCTTCAGAAAGCCCTGAAGGATATAAATATAAAAATTCTAAAAATTCTGTTCACTTTTTAAGAAAGCCCTGAAGGGCTTACTACGGGA # Right flank : CTGCCGTTTGAAAGCCTGATAGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCATTATTGATACAGATTATCAATAACTAACCGGACTCAAAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCTCCCGCTTAGGTTCACGAAAATCATCATAAACCGAAACAATTTTCTTGTCAAGCGGAATCTTATATGATATGGCGATCGCCCCTTAAAACTAAAGACCAATTCTTGCCGCCCACAATAAAAAACCCTGCCTCCAACGGAAACAAGGTTAAGGGTATCCTATTCAATTCAACTAAATGACAATAGCCTGATCTTGGCGGGGATGTTCCGACCCATAGGTAATTGTTCGTTTTAAAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCCGTAGGTTTAACTAACTTTTCAATTTGGTGTTGTAGGTTCACAAACTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCGGGATTATTTTTATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 83928-84410 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR735000.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 83928 37 91.9 39 ..........................G.T.......G ATTAATGTAGTAGGCTCTTTAGGGCCTCCGTATTTTATT 84004 37 100.0 39 ..................................... CTAAAATGGTTTTTCCTTTTTTGTAACTTCTGCCTTTAA 84080 37 100.0 37 ..................................... TGGCTCAGTCGGTGATGTTCTTGATGCCGGAACTTAC 84154 37 100.0 35 ..................................... TTACCGGATTTCGTTACCTACTTGTCGATTGTAAA 84226 37 100.0 38 ..................................... CTCAGAGGTTGGACACTACAGACAGAGTAAAGATATAC 84301 37 100.0 36 ..................................... AACTATTCTTGATTTACATGACAAAATACAGTCCCA 84374 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.8 38 GTTTCAGTCCCGCAAGCGGGATTATTTTAATTGAAAC # Left flank : ATTCTTGTAAGGCTAATTCACAGGCCGCATACCCAATATTTCCACAGGCGGGAGCGTTTAAACCTGCGGCTTGAAAAATTGCGGTGGTGAGGGCGGTGGTTGTAGTTTTTCCGTTGGTTCCAGTAATACAAACCCAGGGTAAATGTCGCAGATTTCGCCAAGCTAATTCTAGTTCTCCGATGGTTTCTATGCCTAAATTTCGGGCGACTTTTAACCCCGGACTATCCCAAGGAACTCCAGGACTGACCACAATTAAATCGAGGGAGGTATCGGGTTGAAAAGTATGTCCTAATTCAACTTGAATTCCTTCGGTTTCTAATTGTTGTTTTTGGGTTTCTAGGGTTGAGGAGGAATTGCGATCGCTTAAAATCACATCCCATCCTTGCAATTTTAACAACCGGGCGGCGGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATGGACAATTTAAAAATTCCCAGTAGATTGTTTTTGATTCTACTCGGATAT # Right flank : CCTCTGCCGTCTGAAACCCTTATGAAACGGTCATTCTAAAGCCCATTTTCGTGAACCTCAAAAATTACCTCATTTCAGCGCTCATTATTGAGACAGATTATTAATAATTAACCTAACTCAAAAGTATAAACCATTGATTTGTCAAGGTTCTAGCGTTTTTTCTGAACCCCCCTAGGTTTTTGCCCCCGCTTAGGTTCACGAAAACCACAGGATTTATATTAAGTCCTCTTACGGCGAGTCACAAGTAAAAGTTTCAATTCTTTACAATTTAGAACTTATTACCATAAACCCCATTAATTGTTTTACCAATATCAATCATCGTTTCCTGAACTCCTTTTTCCTTTCTTTCACTATAGCGATCGCTTAAATAATCAGCCTGTCCTCTTAATAACAATGTAAATTTATAGAGTTCCTCCATCACGTCAACCACGCGATCGCGATAGGGAGAATCCTTCATCACCCCATCCTCATCGAACTCCTGATAGGCTTTGGCCACCGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCGGGATTATTTTAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 130254-131838 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR734992.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 130254 36 100.0 37 .................................... AACGATGATCAAAGCCAGCGCCTTCAGCTAATGCTTT 130327 36 100.0 42 .................................... ATGACCCTGTATCATCTTTTGTACATTCCCATGTCTTACCTC 130405 36 100.0 49 .................................... TCCTTACCATCTTGTTTGATAATCACATCCACAGAGGCATGGTCAATTG 130490 36 100.0 38 .................................... AATGAAGTATAGGAGCAAGTGCATAGAACATAGCTCTA 130564 36 100.0 38 .................................... TGAATAATCCGCTTTTGCAGGATCGAAGCATCAGATAT 130638 36 100.0 41 .................................... CCTAACCGACCGTTATGCACGTTGCAGATTGAACCACCAGG 130715 36 100.0 42 .................................... GGGATTGTAACGGGTCGGGTTTGTGTTGTTTTGGGTTTCAGT 130793 36 100.0 38 .................................... CCAACACGACTATTAAACACTGGTTGATATAACTCAGT 130867 36 100.0 43 .................................... CAAATGTGAGCATATGAGAAGTGCTTTCATTCAATTGAATTAA 130946 36 100.0 43 .................................... ACAAATGCTCTATTAGCTAAATAATTAGGCATTTATTTTCTTA 131025 36 100.0 38 .................................... TGGTTCAAGCAGGGAATATGTGAAGCATTCCGAATCTT 131099 36 94.4 40 ...........CA....................... ATAACATCCTGTACCCCTTTGACGGTAATAGCTTTAGGGT 131175 36 94.4 42 ...........CA....................... CCTTGTTTTAATCCGATGGTTCCAAGGATAGTGGTTGTACCA 131253 36 94.4 43 ...........CA....................... TCTACTTTTAGAATATGGGCGATTGCCCAAGCAAACTCACTAT 131332 36 94.4 42 ...........CA....................... AAAAGGCAAAATCCAAAAAATCCATAAATCGTTCCTGATGCT 131410 36 100.0 45 .................................... TGAATGATTCTACTTTATCAGGACGGTTCTGATTAAAGGTAGCGA 131491 36 100.0 43 .................................... ATAATCTAAATCTTCGTTTTCGTCAACTCGTTTGTTTACCACA 131570 36 100.0 42 .................................... ACCGTAGCTAATCGACTACAGTTTTTACCAATATCAATCAAT 131648 36 100.0 42 .................................... TCAAAGTATTTTGAGATATCAGGATCATAAAACCCTTCGTGA 131726 36 100.0 41 .................................... ATTTCAAAATCGTTATTTAGATAATGATACCGCTTGAGAAC 131803 36 94.4 0 ...........CA....................... | ========== ====== ====== ====== ==================================== ================================================= ================== 21 36 98.7 42 GTAGCGACTTCTGTTAGGAAGAAAAGGTGTTGAAAC # Left flank : TTTAAAGCAACTTAGCCACAGTATTGATCAGCAGGTGCGTCAACTGGGGAAAGTTTGGGGTTTCCCACCGACTAAAACCCCGCAACCGGGACGCATTTGCAGTATTTGGCGGGGGGAAGCGGACGCCTGGGAAGACTTGGTGCATGGGGTGTGTAGCACTCAGGCGGCTAACCGTCCGGTTTGGTGTGGGAGTTCTGAGCGCCGACCTTCGGGGTATGCGGTGCGGGAACATTCGGGTTTTTGTTTGGTGACGGTTTTTGATCCGAATGTGGAGAAAAGTTTACCTGAGTTGGAGTTTAGAAAAATTTATAGTTGAGTTTTGCGAGGCTGAGGGAAAATGGCTGTAATGTCGATTCTGCTGTTGAGAGCCTCGCTGCTGCTCTGGGTAAGGGTTGTGGCGGTTTGGATGTTGGGGAAATTGGGGTTTGAGGGGATGATTTTTCTGAGCCTCGCAAACGGCGTCTGGATAGATTGCTGCGTCGGGGTTGTACAATAGAGGG # Right flank : CAATTTGAGCATTTGCTCTTGTTTTTTCTCATCCCAATTATGAGTAGCGACTTCCATTAGGAAGAAATTGAATAAAATTTTTGCTAATGGAAGCCAAAAAAAAGAGGCAAATTTTTATCATTTTTGCCTCTTAATTAATTTTAATTAAACCCAAATTAAACAGGCAATTTAGAGTCTTTCACGTCCTTAATTCGCATTGTCCAGAATTGAATCGTATCAGAAATTTCTATTAACAAATCCGTTAATAAAACCTGCTGATTAAAATTCAAACTTCTGAACCGTTCTTGAAATTGTTCCGTTGTCATATCCGCCTTAATATTCAGATGAGATCCGACAATATTACACAACACCACTCGCGCCACACCCCAGGCAAAATAACTGGGTTCATTCTTCTCAACTTCTGGGTTCTTGGACACTTTGCCACCTAATAAAATCGGAGAACGAGACATCGCCCAAAACCTTTCAACGCCCCAACTTGCCACATAGTCACTAATTCCACT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGACTTCTGTTAGGAAGAAAAGGTGTTGAAAC # Alternate repeat : GTAGCGACTTCCATTAGGAAGAAAAGGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 282829-281752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR734982.1 Planktothrix paucivesiculata PCC 9631 isolate BBR_PRJEB10994, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 282828 37 97.3 36 ........................T............ TTTAATTTCTTCCACTATGTTTCTATCTTCCATAAA 282755 37 97.3 38 ........................T............ TTTAAAACTCCTCCGCAAGATATAAACCTCCGTTTATG 282680 37 100.0 35 ..................................... TCGGGGTGTAATTTCCCTTTTAAATTTGTTGCATT 282608 37 100.0 36 ..................................... GGTTGTACTTCCTAAAGTTTGGAATGTTAAATTAAA 282535 37 97.3 38 ........................T............ TTAATGAAGATGAACTATTCAGCAAGTTAGTTGATATT 282460 37 97.3 37 ........................T............ TTTTAGGATATTGGCCGGGGATGAATACTTCTGTGAT 282386 37 97.3 34 ........................T............ CTTTATGTGGGTTCTCGTCAATCTGAAAAAATGT 282315 37 97.3 35 ........................T............ TGTTAGTCCCACTTATCAAGCCCTCTCAGTTGGTC 282243 37 97.3 36 ........................T............ CCCCGATTATACAATCTGATTGATTCCCGAATGCAA 282170 37 100.0 45 ..................................... TTCCCGTATATACTTATATAAGCATTTTTACCTAGCCGATATCTT 282088 37 100.0 39 ..................................... GGAGACGGATCGAAAATCCGACTTTTTCCGCTAAACGTT 282012 37 100.0 39 ..................................... TGTTACCGCATTAACAGTAATGGGAGCCGGAACAGTGGC 281936 37 100.0 36 ..................................... TCCCTAACAATAGATTTCAAATCCTCAATATTAACT 281863 37 100.0 38 ..................................... CTCAACGCATTTTTCCCCCTCTTGAATCAATAGGGCAT 281788 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 15 37 98.7 37 GTTTCAGTCCCGCAAGCGGGATTAATGTTATTGAAAC # Left flank : TCTAAAGGCATAGAGTTCACGGAATCTTGATTATCAAAGACTCCGATTATTAGCTGTTTTTAAAATTCAGGAGTATTATCCGATATGGGTATGATTGGTAAGTTAGTAAACCAAACTTTAGAACAGGGCTATTTAACCCTAAATGTTGAAGCAGAACTCCGAAATTTGTTACAAACAACCCGCTATAGTAAGGAGGATTTTGAGGCGTTTATTCGGTTACAAAATGCTGCAATTGATGGGTTAGTTACACAAGAATCCCGTGAACGTTTGAACAGGTTAGATACGGCAATTATTTAATCGAGCTAGGTTTTTTATCAATCAGGACTTACGCATCACCGCTATCAATAGTAGGGGTAATTCATGAATTACCCCTACATCTATATCTTATAGGACTTACGCAGAATACCCAATTATACACCATCTGTAGGGGCGAACGGCCGTTCGCCCCTACTAGATATGGTTGTTTTGCGTAAGTCCTGTCTTAAATAGATTGCCCCAGG # Right flank : TCTGCCGTTTGAAAGCCTGATGGGGCGGTTATTCTAAAGCCCATTTTCGTGAACCTCAAAAATCACCTCATTTTAGCCCTCATTATTGAGACAGATTATTAATAACTAACCAGACCCAAAAATATAAACTATTGATTTGTCAAGGTTCTAGGGTTTTTCGTGAACCCCCCCAGGTTTTAGCCCCTGCTTAGGTTCACGAAAACCATAGCCCTAATCATAAGTCCCCTTGCCCCAATAAACAAGAGGACGTTTCAATTCTTTACAATCCGTAGAGTGAATTCATGAATTTCCCCCCATCTAGGCAGTTTTCTGCATAATTAATTGTTGGAAAATCTCATATAAATTTTGAGCAAATTGTTGAGGATTCCAAAGAGCAGCTAAAGATTCAGATTGCTTAGATTGAATTAACTTTTCTTGAACTAATGTTCTCAAAACTTGATCCTGACCTAAACGCACCCCCCAGTTAATATAGTCTTTCCAAGACTCAGAAATCCCTTCTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCGGGATTAATGTTATTGAAAC # Alternate repeat : GTTTCAGTCCCGCAAGCGGGATTATTGTTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //