Array 1 20270-21819 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPX01000019.1 Megamonas funiformis strain TM04-24 TM04-24.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20270 30 100.0 38 .............................. GTCTTAGCTTTTTCGTAATTCCGCTGAAATCTTCTTAT 20338 30 100.0 36 .............................. TTATTACCTTTCTTAAATGGTTTTCATTCTTAATTT 20404 30 100.0 37 .............................. TCTTTACCAGGTGCATATCCAAAACCCAAGCCTGATG 20471 30 100.0 34 .............................. TTTTGAACCGCTAAAACACGAGCAATAGGTGGAT 20535 30 100.0 36 .............................. TCGTCTTTGGAGGTACCTTGTGCATAAATTTCTTTA 20601 30 100.0 35 .............................. AATTTGTAGAGATATGGACGGAAAAGTTTTTGATA 20666 30 100.0 36 .............................. ATGTGTGGAGAATGCTGTGGGGCAATATTACCTGTA 20732 30 100.0 36 .............................. TGAGTATTTTTAGTTGCTTGCTGTAATAAAGTTAAA 20798 30 100.0 36 .............................. GCCAACTTATCACGTAAGCCTTGGATTTGATAATAA 20864 30 100.0 36 .............................. AATAATTTTCCACAGATACCGCATACCTCTATTCTA 20930 30 100.0 36 .............................. GCGTCCCTAAAATCTGGCTCAACGCAATTATCTACA 20996 30 100.0 36 .............................. AGAACATGTTTAACTAATTTATTGTTAGTGTTTTCG 21062 30 100.0 36 .............................. ATACCTAGAACACAATAACCATCTTTCAAACCTTCT 21128 30 100.0 38 .............................. TAAGCAACCACCACAACAACCTTTTTGTACATTATCAT 21196 30 100.0 36 .............................. ACATCTTTCGTCAATCTACCTGTTAAGATTACTTTA 21262 30 100.0 36 .............................. GATTGACTATTATTTGCATTTTCCTTATTAGAACAA 21328 30 100.0 36 .............................. CCCATTGTAATTGTTACCTGTGGGGTAAGTTGTTGA 21394 30 100.0 36 .............................. ATTAATAAAAAACGTGGCTGTAATTCTATTTCTTTT 21460 30 100.0 36 .............................. TTGTGCCAGCCACCATGAGCAACTAATAAAATTTTT 21526 30 100.0 36 .............................. AAATACCCTATATGTGGCAGTTGGTAATCTCTTATA 21592 30 100.0 36 .............................. TTTAGTATCCCCTTATTAATTATATTTGCAGGATTG 21658 30 96.7 36 .............................G CTTTTAATAAAATGCACGTATGGGCTTTTATCCACT 21724 30 96.7 36 ..........................A... GTTAGCATGCAATATTCCACAGCGTCCACCATATTG 21790 30 96.7 0 ..........................A... | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.6 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : GGTTCAGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTTGATCAACCAATCGACAAAGCTAAAGAATTATGTCGTTTATTTATTGGCATGGTTCAAGGCACAATCACTGATGAAAAAGAGCTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTTAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAGCTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTATTTTATCTAAAATTTACCAACCAAAATCAAGAAAAATCTCGCTAATCCTTGATAAATAAACATTTTCACTAAATCCCTTCAAATCTCATTATTGCTGGTAAAAAATAAGTAAAATCCTTGTTTATCAACACTTTTAATAGTACAATAAAATCATAAAGATTAATTTTTCTAGC # Right flank : TTAACTCTCTAGCATTAGTATAACAATGAAAAAAGCCTTAGGAACTGACCCTTCCTAAGGCTTTTGTGCGTCATCATGAGTTTGATTTCGTCTATACTTAGTATAATATATTACATAGATTTTGCAATACAAAGCTTGTTATTGTGCAAATAAATATTTATGATAAACTACATCCTAAAAATCAAATAAAAACGGCAACAAAATGGCAACAATAAAAAAAGTACCCGCATAAAACAGGCACTTTTATAAATAAATATACGGATATTATTTTCTCACAAAAGTCATAATTATAGTATCTTTACCATAATTATTCTTCACTTTTTCATAGTCTTTAGCCTCAATAGGTGTTATAACTATAGTCTTTAAGCTAGGATTTAGTTTATTTACTTTTTCTACCACGCCTAAATGTTCATCACCATGAAAACTTCCTTGTATATGGAGAACTTTTGTATCTTTATGTTCTTTTAAAAGTTCAACAATACTTTCCGCCATGGTATCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 157897-159631 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPX01000002.1 Megamonas funiformis strain TM04-24 TM04-24.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 157897 30 100.0 33 .............................. TGAGATGGAATTGCAAAAACTTAGAGATGAATG 157960 30 100.0 37 .............................. CATCAATGGATAAAGACAGTGACCAATATTTGATTTA 158027 30 100.0 36 .............................. ACAATTTGAAGATAATTCTATAGATGGAGTTTTATA 158093 30 100.0 34 .............................. TTATGTTAGCTAGTGCGGCAAATAAAATTGACAT 158157 30 100.0 36 .............................. ATATGTACCTTATGTAGAAAAAGAGAGGATAAATAA 158223 30 100.0 36 .............................. TTCAAGATAACAATACAAATATAAACTTAGGCTTCA 158289 30 100.0 33 .............................. TTGGCAAACAATACGAAACAATGGTATTTAGAG 158352 30 100.0 36 .............................. AAGAAAGGAATGTTATGAAAAAGAAATTTAAAGCTT 158418 30 100.0 36 .............................. AATTACAGGGCTTGCAACAGAAAGTAAAGATATCAA 158484 30 100.0 36 .............................. TGCTATATCTGGAAAAGAAGCAGAAAGAATTTTTTG 158550 30 100.0 34 .............................. GTGATTGCTTAAAATTGTGCGTGTGGATAAGCCT 158614 30 100.0 38 .............................. ACGATAAAGAAATGATTTACAGAGTAGAGTTTGTAAAA 158682 30 100.0 36 .............................. TAGAAAAGCAAGAAAAACAACATTAAGAAAAGTTGT 158748 30 100.0 37 .............................. GTAGTTTTAGATAGTGAAGGTATATCAACAATAGATA 158815 30 100.0 34 .............................. TAGCATACAGGTTAAATCTTGTATGCTTTTTTAT 158879 30 100.0 36 .............................. TTGACAAATGCAAGTTATTTTTTTATAAATTTACGA 158945 30 100.0 36 .............................. AATTTATTCATATACAGATGATGTTTGCGAATTAGA 159011 30 100.0 36 .............................. TTTAGGAAATGAAATCAAGAAATTAGAAATTTCTTT 159077 30 100.0 36 .............................. TTTATCTCCCCATTTAACTTGTAATCTGCTACCACT 159143 30 100.0 36 .............................. TAACAATGATACAATTATTGCCTACCGCAATATCAT 159209 30 100.0 35 .............................. TCATATCATTGTGAAATATAATACCTTTCATTTGA 159274 30 100.0 34 .............................. TTCGTTGAACCATAATTTATTACTTGTTTCTGAT 159338 30 100.0 36 .............................. TAATTTTCTTATAAACGGCACCAATTAAGAAAAATC 159404 30 100.0 36 .............................. TATTGATAGAAACAAAATACCTTATATTAAAGAAGA 159470 30 100.0 36 .............................. TAAGTTATTGTCTTCTCCTAAACTTAAAACTTGTCC 159536 30 100.0 36 .............................. CGATATTCAAGACACAGTCGATTTTGTATTTAATCG 159602 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 100.0 36 ATTCAAATACAACACTTGTTAAAGTTAAAT # Left flank : GAACTTGCTAATTTTGATCAGTTAATATTTATCTGTGGTCATTATGAAGGCTTTGATAATCGTGTGGTACAAAATTTAGCTGATGAAGTAATTTCTATTGGCGATTATGTATTAACAGGTGGAGAACTTCCAGCTATGGTGGTAATTGATGCTGTATCAAGAATGCTTCCAGGCGTATTAGGTTCTGGAGAGTCTGCGCCAACAGATTCTTTTTATAATGGGCTTCTAGAATATCCACAATATACAAAACCACGTGAGTATAGAGGTCTTAGCGTACCTGATGTACTACTTTCAGGAGACCATGCTAAAATAGCAAAATGGCGTCGACAAGAATCTTTGCGTGTTACGTATACAAATAGACCAGACTTACTTGAAAAAGTAGAATTAAGCAAAGATGATAAGAAATTTTTAGAGGAATTGAAAAATAATTCTAAATAGAAAAAGGCTTTTAATAGAAGACAAAATCTATTAAAAGCCTTTTATAATTTTTTAATAATAAG # Right flank : TGCTAGAAAAATCAATCTTTATGATTTTCATTATACTATTAAAAGTATTGATACACAAGGATTTTAGTTGTTTTTTACCAGCGATAATAGGATTTTTGGAGATTTTATAAAAAGGTTTAATTTTCAAGCTTTAGAGGAGTTTTGTTTATTTTTAGCTGGTAATTTTATGGTAAATAAAATTTTATTAAGCAAAAAACAAAAAGCAACTATCATTGATAGTTGCTTTAATTTTATAAATCATATGGTGACCCACCCGGGACTCGAACCCGGAACCTGCTGATTAAGAGTCAGATGCTCTACCAATTGAGCTAGTGAGTCATTAATAACAAAAATTATTATACTGCTCATTTATGTATTTTGCAATACTTTTTTATAATTTTTTTCATATGACTAAAATGTTACAAAATTTAATAAATAATTTTCAATAGTAAAACTTAAAAATATGTAATCTTTTTTCGTATTGTCTTAGAATTTATGAATAATTATGATATAATAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACACTTGTTAAAGTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 152660-153470 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPX01000001.1 Megamonas funiformis strain TM04-24 TM04-24.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 152660 30 100.0 36 .............................. AATTTTTCTACAGGTCTTTGATTATCTCTTACACTT 152726 30 100.0 33 .............................. TACCGCCAACAATAACCATGGTTTTATAGTTAT 152789 30 96.7 35 C............................. ATTCTACGCTTCTTATGTTGAGTATGGAACTGTAA 152854 30 100.0 35 .............................. ATTATGGAAGCTATAAAAGGCGAGTATGTAACGTC 152919 30 100.0 36 .............................. AATTGTAGAAAAACCACCAGAACCAATTGATATTGA 152985 30 100.0 33 .............................. ACAATAAAAGTTGTTTCTATTTCCATTAAACTA 153048 30 96.7 35 T............................. TCTAAAACTTTTTGATACATTGCTTCTTTAGTCCA 153113 30 100.0 35 .............................. ACAGTTAAATCTAGCACGTCTACTCCGCCATCATC 153178 30 100.0 36 .............................. GCCACTGTTTTTACCTCCTTTTGGCTTCTCTACTAG 153244 30 100.0 36 .............................. CTCCTTGTGTTATTAACACATTTTTATTTGTTCTAA 153310 30 100.0 36 .............................. TTTTATATGTTTTGTATTTAATTTAGCGACTTGGAT 153376 30 100.0 36 .............................. TGATGAACAAGAAACTGGATATGATGATATTGTTGT 153442 29 86.7 0 ...........G....A....-....A... | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 98.5 35 GATTAACAGTAACAAAGGTTGTTTTTGAAT # Left flank : CATATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTATGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCAGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAGTTAGAATTACAAAAAATTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAAAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATAAGTATATGTTTATAAACCCTTATAAATACAAGAGTTATAGCAAATTTCTTTCATTAAAGAAATAAATGCATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAATGTTTTTGAGCTATATTATAAGATATAAAGCCTTTAAAAACGAG # Right flank : TGAACTTAGTAATGGAAATATATAGATATTCTAAAATAAAAAAATGATAATAAATTATTATGAATGAATATATAATCTATTAATAATTTTTATAGACTAAAAGGATTATTTTTGTTATAATATACAAACTATGATTTTGGAAGTATATATTTGATAAAAATAAAAATATTATTGATTACTATTTGTATTATAGTGATGTCTACTATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAGTTAGCAGCGGGATATTTAGTTGCCAATGAGGTGCAACGATTAACGAAAATAAGTGCATTGGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACGATAAAGATTTAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATGATGGTATAAACATAAGGATGTTGTTTTGTATAAAATAATATTCTTATGTTTTTTTATTAGATGAAACCTTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAGGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 195422-196513 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPX01000001.1 Megamonas funiformis strain TM04-24 TM04-24.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 195422 30 100.0 36 .............................. AGACATCAGAAAAGTATCAAGGTTAGATACAGAAAA 195488 30 100.0 39 .............................. TAAGACGTGAAGTGTACAAATAAATTACAAATAATATGT 195557 30 100.0 37 .............................. ACTTCCGCCCGCACTTGCCATTAATTAGACCTCCGTT 195624 30 100.0 36 .............................. TGCTTTTTCTCCTTTCTAGCTAGACTAATTCTTTTA 195690 30 100.0 40 .............................. AAGGATATATAAAATATAAATCAGTAATAAATAAGAACTT 195760 30 100.0 35 .............................. TGTATGAACTTTTGTGTACGTTATTTGCTTCGTAT 195825 30 100.0 35 .............................. GGATATAGAACGAATAAAGATTTATGGTGTAGTTT 195890 30 100.0 35 .............................. TTATATAAAACTTCTTAGGCTCGTTTATTTCTCCT 195955 30 100.0 36 .............................. ATTACTTTCATAACTATTATCTCCTTTTAAACAGCT 196021 30 96.7 35 ............C................. TTTACTATTTGTTCTCGTTGTTTTGGTGTCTTATA 196086 30 96.7 36 ............C................. GTTATTTTTTTATCGCTACTACTACTGCTGCTATCA 196152 30 96.7 36 ............C................. TTGGCATAGAGCCAGCCACTCCGCCTGCTATTACAG 196218 30 96.7 36 ............C................. CTTTGATTTTACTGTAGAGCTTTCCTATATGTTAGA 196284 30 96.7 36 ............C................. GTTCTAAAAGTGTTTGTTGGTAACGGTGTACTACTG 196350 30 96.7 36 ............C................. AAATCCTAAACAGCTTGCTAAAACAATACAAAAAAG 196416 30 96.7 37 ............C................. ACGGTTCTACTACCTTATAAAGCCATTTTGTACTTAT 196483 30 86.7 0 ..C.........C.............T..A | A [196509] ========== ====== ====== ====== ============================== ======================================== ================== 17 30 97.9 36 GATTAATAGAAAGAATAGTTGTATTTGAAT # Left flank : GCAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGCATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGTATTGCAAGCGCAGAAGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTAGCAGTTGGAGCACATAATTTTATTGACCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACACAATATTGAAGATGTAAATGAACTCGTAGGAGCATTACAAGCTTAAATAAAAATTACCAAGTGAATTTTTACTAAATAGTCTATAAAGCTAAGAAATATAAGCTTTATAGACTATTTTTTTACATAACTAATAAAAATCAAAATCGCCTGGTAAAAATTTTTAATATCCTTGAATAACAAGGTTTTAGAAGCTATAATAAAAAAAGAAATGTTGATAAATATAGG # Right flank : AAAAACTTATTGACAGTGGATATAGTTTGTGATATATTAAGTTACGTTGTATTTGAGATGCAACGTATTCCACAAGAAGAAGTCACCACTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTTTTCTATTAGTAAAGAAACTTTAAGAATTAATGGCGAAATCCGCGCTAGAGAAGTTCGTGTGACAGATGCTCAGGGAGAACAGCTTGGTATTATGTCTACAAGAGATGCTCTTCGTAAAGCAGAAGAAGCTCATTTAGACTTAGTAGAAGTTGCTCCAAAAGCAAAACCACCTGTTTGCCGAATCATGGATTTCGGAAAATATCGCTATGAACAACAAAAACGTGAAAAAGAAGCGAAGAAAAAACAGAAGGTTATCAGTGTAA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAAGAATAGTTGTATTTGAAT # Alternate repeat : GATTAATAGAAACAATAGTTGTATTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 8106-6824 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPX01000013.1 Megamonas funiformis strain TM04-24 TM04-24.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8105 30 100.0 36 .............................. GGATTTGTGATTTCTCCTGTTTCCATATCTACGCTA 8039 30 100.0 35 .............................. TTTATATGCTTCTTCTTTGCTATATAATTCTTTTT 7974 30 100.0 35 .............................. TCTATAATCATTTACTTTTTAGAGGTCGTGGTAGT 7909 30 100.0 36 .............................. TTGCTAGGATATACTGTTCCTGCTGGTACGTATTTT 7843 30 100.0 36 .............................. ATTTTTTGCAATGTCATTTGTTTGCCTTTTAATTCG 7777 30 100.0 35 .............................. TTATAATTCCTCCACACATTTTACTTTTACAACGC 7712 30 100.0 39 .............................. TTTTTGTTGGTTTATGTGGTTATGTTGTTTTTACAACGC 7643 30 100.0 37 .............................. TTTTTGTTGGTTTATGTGGTTATGTTGTTTTTACAAC 7576 30 100.0 36 .............................. TTTATAGTCTTTAGTTAAGAACTTTATCATCTTTAT 7510 30 100.0 34 .............................. TGAGCAACTAATAAGCAGATTTTTTGGCTATCAT 7446 30 100.0 35 .............................. TTAATGCTTTTAGACTTATTATTTGATAATAAAAA 7381 30 100.0 37 .............................. TCCATTTATAGTAACTAAATTTTCTTTGTCTAATTGA 7314 30 100.0 36 .............................. TGCTTACTCACCACCCTTAAAAGATAAGAATATTTT 7248 30 100.0 35 .............................. GTGGTACACCTCGTAGAACTGCACTTTTAGTAAAA 7183 30 100.0 35 .............................. GGCTTCTTTAGCTGTTTTACACATAGCAAATATAA 7118 30 100.0 35 .............................. GTTATTCTTATAAGTGTGATATAATATAAATTGAG 7053 30 100.0 38 .............................. TGCATTATCAATAATTTTTTTAATACGTTTTTTATAAA 6985 30 96.7 36 ...............T.............. TCTGGTCTCCAATACCATAATTTCTTTTTAGAAGCC 6919 30 86.7 36 .........T.....T........A...G. GTATATTGAAATGTCCATTGCTTGCCATTTAGTTCA 6853 30 86.7 0 ...............T.......TA....A | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 98.5 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : GCTGTCAGACCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATCCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTATATTATGTAATTTTCCTAGATTTTCTCTTGCAAATAAACTTTTATCAATAAATCTAGTCAACATAATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACCTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTAATATATTCATCTTTATTTAAAAATGTTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGTTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATCTATAATATATTTTATAAACCTTAATCTTTAAGGG # Right flank : AGACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAAATGTGTATTTACTCCTATTGATGTATACTGGGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAACGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATAGCAAATAAATTCCAGATAGCGACTAAATTCATTATTATATCATGCGGTTGACAAATTATTTTATCTTTTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACGTTTCTTCTCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 59896-54920 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPX01000006.1 Megamonas funiformis strain TM04-24 TM04-24.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 59895 30 100.0 36 .............................. GAAAACCGAACCAAAAGATAAAAATATTGCAGGATT 59829 30 100.0 36 .............................. CCCATTGTAATTGTTACCTGTGGGGTAAGTTGTTGA 59763 30 100.0 36 .............................. ATGTTTCTCTTTCTCTGTTATATAGGCTTAATAAGT 59697 30 100.0 34 .............................. GTAGCACCTAATATTGCATTTCTCATAACACTAG 59633 30 100.0 36 .............................. TTAATTTTGTCAATTTCTTTTTCTACTTTTAATACA 59567 30 100.0 36 .............................. AGAACATAGAGCTGATGTATTGGCAAAACTTGAAAA 59501 30 100.0 37 .............................. AATCTAAAATCTTGGGAAAAACGATTTAAAGAACAAA 59434 30 100.0 35 .............................. GTATTTACATTTAAAGTATAAGAACCACCCGGAAC 59369 30 100.0 34 .............................. GGACAGTTACATCAAGTAGGCTGTCCCGACCACA 59305 30 100.0 37 .............................. CGTCTATTGACGGAGCATTAGCAATTTGTACAAGAAT 59238 30 100.0 34 .............................. CTTGAACCTGAAACACAAGAATATCTATTTAAAA 59174 30 100.0 35 .............................. TTAACACTTGTTCCAGTCATATATGCTATATAGTT 59109 30 100.0 35 .............................. CAAATTCCCTGCGTTTTATCTCCTACTTTTGTAAT 59044 30 100.0 36 .............................. TTTATTACTCCTATAACAACAAAACAAGAATTTGGG 58978 30 100.0 36 .............................. TTGAATTTGTCTATTTTTATCTGACTTTTTTTATCT 58912 30 100.0 40 .............................. TTGTAATATGCAAGTTGGCATTTTATCGCCAGTCTTGCCA 58842 30 100.0 36 .............................. TCACCATTAGTTATAGTTAGCGTATCGTTAGAACCC 58776 30 100.0 36 .............................. TGATAATTTGCTTCTTGCCCCCATTGCCATATAAAC 58710 30 100.0 36 .............................. TAAATTCTACCAGCTACGATTAAAGAGCCGATAGCG 58644 30 100.0 35 .............................. TAGATTATATAGTATTTCTTTACGCCCCTTAAATT 58579 30 100.0 37 .............................. ACTTAAGCGAATTAGTTGACCAATATATTAGCAATGG 58512 30 100.0 39 .............................. TAATAGTGAAGTATGCTTTAAAGATAATTTTTCTTTATT 58443 30 100.0 34 .............................. CTTCCAAAAGAAGCACTAGAAAAAACAGATAAAA 58379 30 100.0 36 .............................. TAAACTCTTTTGAGCATGTGTAATATTTCTTCTTTG 58313 30 100.0 34 .............................. ATATAAAGTGAATAATTCTTGGCTATTGTATAGT 58249 30 100.0 36 .............................. ATAGCCTTGCTATCTGCAACAAGGTTTTTGATGTAT 58183 30 100.0 36 .............................. ATTCTATTCCTTTTTCTCTTTTGAGCCTTCTTGCTC 58117 30 100.0 36 .............................. TTGCTCCCGGAAAAACGCATAAAGAATTTGTTGTTA 58051 30 100.0 37 .............................. TCTACATACGGCATGTACTCCATATCATCCGCGTAAT 57984 30 100.0 37 .............................. AGGCTATATTGATGAACTACGTTCGGAATGGGGAGAA 57917 30 100.0 36 .............................. AATAATATCGCCTGCTTTTCTATATTACAAATAAGA 57851 30 100.0 37 .............................. TTCGGTTGTTAAATCAATAATAGAAGTATACTTTTCT 57784 30 100.0 37 .............................. TATTTTTTTGTAGTAACACCAACTTTGTTTTTGTTTC 57717 30 100.0 36 .............................. TACCCCCATGAAGAAATCTTCACCCCCTCCCATGAA 57651 30 100.0 36 .............................. TTAAATACGTATTCATATAGAATAGCTGTAATTGTT 57585 30 100.0 35 .............................. CTAGAGAACGTTAATAATATAGTTGGCAGGGCTTA 57520 30 100.0 34 .............................. CGTTTTTTACTTAATGTCAACAAATTATCATAAA 57456 30 100.0 36 .............................. TCAAATAAAGGTTTGTTATACCTTTTAAGGCTTTCG 57390 30 100.0 35 .............................. ATCTAGCCTTCATTCTGCACTCATAACCACAGTAT 57325 30 100.0 36 .............................. TCTCTACTAGAGAATAAGAAAGCACCTTCGCCAAGC 57259 30 100.0 36 .............................. GAAATTTTTCCACAAGCTAACTTGCGGACTTCGTTG 57193 30 100.0 37 .............................. TCGTTTTTAAGGTCGCGGGCTTGATAAGGGTCAACTA 57126 30 100.0 36 .............................. TTTGTTATTTGCTGTTGTGTTCCAGCTCTTGCCTGC 57060 30 100.0 34 .............................. TTTTGCTCTGTACCAAACGTATTATATCTCTGTG 56996 30 100.0 37 .............................. TGTAGAATATGGTCATCGTCAAAAAAAACGTTGGGTT 56929 30 100.0 38 .............................. ATTTCTAGATTAGTCCATAATTTATTTATTTTTTGTCT 56861 30 100.0 34 .............................. AGAGTATTTATCTAGTGCAGGTAAAGCAATCGAA 56797 30 100.0 36 .............................. AAATTTAAAACAAAATATTTTCGACTATGCAAAATA 56731 30 100.0 36 .............................. TACTTTATTTACATGGAAATGTGGTTTATCTGTTCA 56665 30 100.0 34 .............................. TCAGATACTATTTTTACCGACATTTGGTCGATAA 56601 30 100.0 36 .............................. TTATTTATCATCAATTTTCCCTCCTGTATTCCTCTA 56535 30 100.0 36 .............................. GTCAGCAGTTCATCTGGTTTTACTTCACTACCCATA 56469 30 100.0 37 .............................. AAGTGCAGTCTGTATAGGCTTAGTATTTTTTAGGGCC 56402 30 100.0 38 .............................. TTGTTTTATTCTCCTTAAATTGAAACTTTATTTATTAA 56334 30 100.0 38 .............................. TCTACCCATTTTTCTTTTGCATAAGCAAGAAATGCTAC 56266 30 100.0 35 .............................. TTACAGTTATTAGAAAAAGATGATTTAGTGGCGGT 56201 30 100.0 37 .............................. TTGATTATCTATCAAGGAGGAGTTTTTGTGGCAAAAA 56134 30 100.0 36 .............................. TTTAGCCCTTTAGGTGGATTAACATCATTTAGTTTA 56068 30 100.0 35 .............................. CATCAGCTATACAATCACCTTTTTTGATGAACTCT 56003 30 100.0 35 .............................. AGGATATAGAATATATGATGCTTCTGGTGTTTCTA 55938 30 100.0 36 .............................. AGTTGATGTTGACGCAGATAACCTTACAGAAAGCTA 55872 30 100.0 35 .............................. AACGTCTGTGCTAATGTTTCACCTTTATTGATATA 55807 30 100.0 35 .............................. AGTAATGATATAAATACAATCTCATCTTTATACCT 55742 30 100.0 35 .............................. CCAGCCATGAACAAAGTTTTTGACGGATTTTATAT 55677 30 100.0 36 .............................. ATTTGAATATTATTGTTATTTGTGATTTTATTTTGG 55611 30 100.0 36 .............................. TACTGTAATGGGAAAACAATTTCATGATAATATAAA 55545 30 100.0 37 .............................. CGAATTTCTTGTTTTACCTTAAGTATACTTTCTTTTT 55478 30 100.0 36 .............................. GACAGTTCCTTAATATTAGCAGGTATATTATCACTA 55412 30 96.7 35 ................A............. GCTTTAGGAATTATAAGTGCAGGCTTTTTCTTTTT 55347 30 96.7 37 ................A............. TGTATTGCAAATGATTTATGCGTTCTAACATAAGATA 55280 30 96.7 35 ................A............. AGAAAGATATGGTGGTCAAATAGTATGTCTTTTAA 55215 30 96.7 38 ................A............. GCTTTTGTGCTTTCCAAATCCTCAATACGATACTCTAA 55147 30 96.7 36 ................A............. CCTTCTTAAAAGAAAAAGACAGCCTAATTTGACTGC 55081 30 96.7 36 ................A............. TCACAATACCAATAATTACCATCTATACAAATATTA 55015 30 96.7 36 ................A............. TTCCTAGTTTCATTAGCTACTTGCTCCTCCTCTTGC 54949 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ======================================== ================== 76 30 99.5 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TATCCTCTTGCTAAAAAATATTTAAAAGGCTGCAGTGGTGTTATCACTTTTGTAATCAAAGGTGGCAAAGAAAACGCTGTTAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGCACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCTGCTGGTATTAATAGTGGTATGGTTCGTTTCTCTGTGGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTTTTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTTATTTTCCCAGCCATTTTCTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATAGAAAATCACCAAAAATCCTTAATCGCTGGTAAAAAATCGCCTAAATATTGATATTTCAACTTTTATAAACTATAATTATTTATAAAAGTATTAATTTTACTGGC # Right flank : ATAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTACTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAATCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATTTTCTCAATTATTGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //