Array 1 162925-161326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSS010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162924 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162863 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162802 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162741 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162680 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162619 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162557 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162496 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162435 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162374 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162313 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162252 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162191 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162130 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162069 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162008 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161947 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161886 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161824 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161721 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161660 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161599 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161538 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161477 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161416 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161355 29 96.6 0 A............................ | A [161328] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180366-179056 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSS010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180365 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180304 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180243 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180182 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180121 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180060 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179999 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179938 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179877 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179816 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179755 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179694 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179633 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179571 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179510 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179449 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179388 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179327 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179266 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179205 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179144 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179083 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //