Array 1 92972-91723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGPH010000002.1 Escherichia coli strain 4862 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92971 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 92910 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 92849 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 92788 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 92727 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 92666 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 92605 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 92544 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 92483 29 96.6 32 ............G................ ATTTCATCAAAGCATTAAGGGATGGAATAAAG 92422 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 92361 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 92300 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 92239 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 92178 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 92117 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 92056 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 91995 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 91934 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 91873 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 91812 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 91751 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119832-118521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGPH010000002.1 Escherichia coli strain 4862 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119831 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 119770 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 119709 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 119648 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 119587 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 119526 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 119465 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 119404 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 119343 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 119282 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 119221 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 119160 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 119099 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 119038 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 118977 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 118916 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 118855 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 118794 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 118733 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 118671 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 118610 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 118549 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //