Array 1 29021-26851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANU010000006.1 Corynebacterium ulcerans strain 4243 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 29020 29 100.0 32 ............................. AGTCTTTGTAGCCGTCCGGCTACCTCCGCCCG 28959 29 100.0 32 ............................. GTTCCGAGCAACCAGGTAAGTCCTGAGCAGTG 28898 29 100.0 32 ............................. CCGCGATAGCACCACCAGAAGCCTTCACAGCG 28837 29 100.0 32 ............................. CCGCGCACGCTTGAGTGACGATATCAGCACCA 28776 29 100.0 32 ............................. GGGCCTACGGCTTTGCGTCTGGCCCAGATGAT 28715 29 100.0 32 ............................. GGTTTATCAGCCGACCATGTGGCCTCCCACCC 28654 29 100.0 32 ............................. CGGAAAGTCGAAGAGCTACATGTTGCTTATGC 28593 29 100.0 32 ............................. ATCCATGCCATGATCAAACCCAGCGATAGCCT 28532 29 100.0 32 ............................. ACTGAATCAATAACCCGGCGCGAATACCGGGT 28471 29 100.0 32 ............................. TTCCTCAGATGTATAAACGCTGGCGGTCATCG 28410 29 100.0 32 ............................. AGGCGTGAGTGAGGCACTGCAGGCTGGTATCG 28349 29 100.0 32 ............................. AGTAGGAGTATGAGTGCTATTTCTGCACATAC 28288 29 100.0 32 ............................. GAGGCGACCACCCTTATAAATCTCTTTAATTG 28227 29 100.0 32 ............................. TGCGCAATCCACGGCTGGGCAGCACGCTCTTA 28166 29 100.0 32 ............................. GATATGTTGCAGCTCATGTCTTCCGGTATTCC 28105 29 100.0 32 ............................. CATTGGTACTGTGGCTGCCACTGCGTGAGCTG 28044 29 100.0 32 ............................. GCGACGCGGCCTTCACGTGGCGCATCAGCAGA 27983 29 100.0 32 ............................. ATCGGCCAGAATCGTTCGACGGGCTACTAGTC 27922 29 100.0 32 ............................. GTCTGCGCCTACACGGAAGCTGACCGTCCACT 27861 29 100.0 32 ............................. TCAGCGGCTCGTGCGGCCAATGAGGCGTCGAG 27800 29 100.0 32 ............................. ACCATTGATTTGGTGGCGGATTCTCTGCGTAA 27739 29 100.0 32 ............................. ATCCCATCGCCCCCACACAAATGTGCCCATTT 27678 29 100.0 32 ............................. TTTTAACCAGACCTCGCGGTCTAGATTCCCAT 27617 29 100.0 32 ............................. CAGTACTTCTACGGGTGTTAAGTCGCCGTATA 27556 29 100.0 32 ............................. AGGGGATGTGTGGACGGCCCAGCAGCTCGCAG 27495 29 100.0 32 ............................. CTTGTCGGCAATTCTTAAAATATCCACGTTTA 27434 29 100.0 32 ............................. GCAGTAAGCGAGCTACTAAACGATTGGCGTGA 27373 29 100.0 32 ............................. TGCGTTTCCCGCATTCCACCCGCGTCTACGCG 27312 29 100.0 32 ............................. TTGCCGAATTTTGAGCCGGTCGCGGTGAAGCT 27251 29 100.0 38 ............................. TTTTGTGCTCCCCCCCCCACACACACAAGGCACTCGAA 27184 29 100.0 32 ............................. GAGTTTTTCCCTCAATTCCGCTGCCCGTACGG 27123 29 100.0 32 ............................. CACACTAAAACGCCTGCCGCTATCACCGGCGA 27062 29 100.0 32 ............................. GAGAAATGTCCATCTACCAGCGGAAACGATGT 27001 29 100.0 32 ............................. AGGGCCAGCAAGAATGCGCAAGCGGCTCAAGA 26940 29 100.0 32 ............................. CACAGAAGCTCCATCCCTTTTTCACCCCACAC 26879 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 99.9 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : AACACCGCCAGCCCCAGAAACCCTCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTTCGCACCTATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGAGTAAACGCGCAGGTAAGTTAGT # Right flank : TAGCTTGACACTTGCTAGATATATAGTTTGTGTCCACCACTACGGAGGTATAAATGTCTATCACGCCAGAACGGGTTATGCAGCTTTTAGGTGAAGGTATGACCCAATCCCAGATTGCTAGGGAATACGGGGTTACCCGTCAATACATCTTCACTCTTGCAAAAAGAGGAGGGCATGAAGCTAGGGAAATGGAATACATCAAAGATGACATACCTTGGCCAAAAGTTAAAGATAAGCACCGCGATAACACAATCTACAAAACGCTACGAATCCACGCCCGCTATATGGAACGGGGACAAGAGGGGGTACGTGGTTCAAGTTATGTTAAACTGCTCGGCATGTATCGAAAACTTGTTCGATTCAATCAAGTTATCGACTACGACGAGTCCTATCCACCTGTAAAAGGTTTGTCGAATACAGGCGGGTTTATGTACGTACCGAGGTCCCCAGAAGACGGGAACCTCATTATCAAAATGAAGCCCGGTGTGCGGATCACAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 638760-637387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANU010000001.1 Corynebacterium ulcerans strain 4243 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 638759 29 96.6 32 ..............A.............. ACCAAAAAACGCGTGGGGCTAAAATCCGCCCG 638698 29 96.6 32 ..............A.............. CCCGCAAATTCATGCCCTATGGCGTGGAAGAC 638637 29 96.6 32 ..............A.............. GACATGATCGACTACCTAAACGGATTCGCTAC 638576 29 96.6 32 ..............A.............. GGTTCCGAAGTGCTCAATAGCTAGGGCGCGCA 638515 29 96.6 32 ..............A.............. CCGTTGACTTTGTTCCAGAGGTACAAAATGTA 638454 29 96.6 32 ..............A.............. AGGCAGAGCTTTGGTTTTGGCGACCAAACGCC 638393 29 96.6 32 ..............A.............. CGCCTCCACCTGATGAGGAAGGGGGCGCATAA 638332 29 96.6 32 ..............A.............. CAGCTAACCCAGTGGCAATCACAGTTTGAGTG 638271 29 96.6 32 ..............A.............. GGCGGACTCCGGCCAGGCCATAGAAAATACTG 638210 29 100.0 32 ............................. GGCCGTCGATCCTCACTTCACGGCTTGATAAC 638149 29 100.0 32 ............................. CCTCAATCAAAGGATCCAGCGTCGCCGCAGAA 638088 29 100.0 32 ............................. ATAGATTTGGGCGGCGGTTATTGTCTTTTTCG 638027 29 100.0 32 ............................. AGCGTGATTGCGTGTTGGAATAGCTCAACGAT 637966 29 100.0 32 ............................. TCCATTCAGAGGATTGTGGCGTGGCGGAGTTT 637905 29 100.0 32 ............................. ATAACGGGAAAAAATACCCCGGGCTCAAGCTA 637844 29 100.0 32 ............................. TAAAGAAGTTGAAGCCACTGTTTTAGCGGGTA 637783 29 100.0 32 ............................. GGATAACGACCGCGACACCCGTGCGTGCCCGT 637722 29 100.0 32 ............................. CCCAGACTTGTGATTGTGGGCGGTTTCTTGAC 637661 29 100.0 34 ............................. GTCCCCAGCAGAAGTCATCAAAGCAAGATAAGGT 637598 29 100.0 32 ............................. TGCAAGAACTTTCCCAATGGGTAGCGCAGACA 637537 29 100.0 32 ............................. ATGCCAGATTCAACATCCACCCTATGCTCGTA 637476 29 100.0 32 ............................. AGGCTCGGGGATCTTCAAGAACCGCTTGCTGG 637415 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 23 29 98.7 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : AAAGATTGTATTATCCTTATGGGTCTCGTCTATATCAGTCCACGGTAAATCGTCTTTAATATATTCCTGCTCTGCAGCTTCATGACCGGCCCGCTTGGCAAGTATGAAGATATATTGACGAGTGACCCCGTATTCCCTGGCAATTTGAGATTGGGTCATACCTTTACCCATTAGATGCATAACTTCTTCAGGTGTAATAACCATTATTCGTCTCCATTGTTGACATGCGAATAATAACTACCTTTTATTTATGTAGATGGTGATGGTGAATACAAATAAGGTGTTTGCAGTAGATGTTACATATAAAAAAATATACTTCTTAACTATGGTGAATTTCCTGGTCAATATCTATAAATTTGTCAGTGGCTAATATTTGTAAGGTCACTTTTTTGGGGGTATTGCTTACCATTCTGGTAACTCAGGAATGGTAAGCAGATTGTTAGAGATGGACTGTCTTTGTGCATGGTTTGAAAACTAAAAGTAATTGAGATAATAAAATT # Right flank : ACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGACCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTAAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCTGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //