Array 1 7947-2891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHW010000020.1 Clostridium perfringens strain 1805-122 NODE_20_length_47666_cov_124.045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7946 29 100.0 36 ............................. TAAATGTTAGAGAAACTCCTAACGGAGAGGTTATAG 7881 29 100.0 36 ............................. GGTTAGTTAATGCATAAGCTATTTCCGTAAACTTAT 7816 29 100.0 36 ............................. TATTTATATTTCTATTTTATCATACTTTATCCTACT 7751 29 100.0 36 ............................. TTTCTTTAAACTCAACTTCTGTAATAAGAGAATCTT 7686 29 100.0 37 ............................. TGGGGAGATGTAGGTTCAATTGATAAGCCTGTCGATA 7620 29 100.0 36 ............................. GTAATAATAACTTCTCTTTCAAAATTTAACATAATA 7555 29 100.0 36 ............................. GATGAAACTTGGTATTACAGAGCAAGAGCTGTTAAT 7490 29 100.0 35 ............................. ACGGAGAGTTTGATGTTTATAGTAGCTCAGAAAAG 7426 29 100.0 37 ............................. ATGATAATAAGTATAGTATTTATATTAGTAGTAGTAG 7360 29 100.0 36 ............................. AACAAAACATAAAAACATTACAACGCCTGTTATAGG 7295 29 100.0 36 ............................. TCTAAGATAGTATTAGTTAAATTTAAGAAAAGTGCA 7230 29 100.0 37 ............................. GTTAAATATACAGAAGGTGGGTATAGAATATATAAAA 7164 29 100.0 38 ............................. ACTAAAAAACTCAAAAACAAAAACAAAGGTTTAAACAT 7097 29 100.0 36 ............................. AGAGAGGGTTATTTTGTAGATACTTTTAATAATTTT 7032 29 100.0 36 ............................. ACTTTATTAGATTAGATGATTCAAATGGAGATTATC 6967 29 100.0 36 ............................. GCTTATATGATAATAATGTAAATAAGATTGATTCTC 6902 29 100.0 36 ............................. TCATATTTAGAATAGTTAATCGTGTCGTTTTTAATA 6837 29 100.0 36 ............................. CATTTATATAAACTAGAATGTGAAGATGATTCAGCG 6772 29 100.0 37 ............................. GTTGAAAGTACTTTAAGCATTACTTGTACCACTCTTC 6706 29 100.0 36 ............................. TAGAACCTTTACCGCCTAGCACTTCAACACCTTTCA 6641 29 100.0 36 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGTA 6576 29 100.0 37 ............................. TAATATTCCACTCCTTACTTAATAAACTCCGAGGACG 6510 29 100.0 36 ............................. GGAGAATTAGTCCAAGGAGTTTTTAATGCAGATATT 6445 29 100.0 35 ............................. AACTTTGTAGAATCGTAAAGCTTATCTTCAACTTG 6381 29 100.0 36 ............................. GTTATTATCATCATTATCCCCGAAAGCTTAGTTTTC 6316 29 100.0 36 ............................. TTTACAGTATCAGTTACAGTTACCCAACTGTCTTTG 6251 29 100.0 37 ............................. AGGGAAAACTGATGCAATAGGTAATTATAAATTTATA 6185 29 100.0 36 ............................. CTTAATGATAAACCTAAAAAGAAAAAAATACGCAAT 6120 29 100.0 36 ............................. AACTTTATTAAAATAATAGCTGCATATAATATCTTT 6055 29 100.0 36 ............................. GTGAAAACAGTAGGTAAAAATTTATTAGATCCATCA 5990 29 100.0 36 ............................. TGAGATTTTTTAAATCTATAGTGCTATTCGGAGTGT 5925 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 5860 29 100.0 36 ............................. ACTTTATTAGATTAGATGATTCAAATGGAGATTATC 5795 29 100.0 36 ............................. GCTTATATGATAATAATGTAAATAAGATTGATTCTC 5730 29 100.0 36 ............................. TCATATTTAGAATAGTTAATCGTGTCGTTTTTAATA 5665 29 100.0 37 ............................. TTTAATTCTGAATCTTTCTCCAGCTGGTATTTTTCCA 5599 29 100.0 36 ............................. TGTTTAACTATTTATTTTCAGTTGTTGGTACAAAAT 5534 29 100.0 37 ............................. AAAGAACTTGAAAAAGAGCTTGACGAATTTCATGAAG 5468 29 100.0 36 ............................. TTATGTTCTGAAATTATATTAGTAATTGGTAATTCA 5403 29 100.0 37 ............................. TTATGGTATGCATGGTATAACTCTAAACTTAATAGAG 5337 29 100.0 37 ............................. AAGTTTTCAGGATAAACATAGAAACATTGTGAAGTTG 5271 29 100.0 36 ............................. CCATAAACCCTTTGTTTTTTAAAATATCTCTTACAC 5206 29 100.0 36 ............................. CTTTACTAATTTATTAATTGAGGTGTTTTAAATGAA 5141 29 100.0 38 ............................. GTTGAATAATTGAACCATGTTTCTCTCTATCTTTATAG 5074 29 100.0 36 ............................. GTAGCTCCAGAAACTTTAGCTGAAAAAGCATTAACA 5009 29 100.0 38 ............................. GGAGTTAACTCATAATCTAAAGTATTATCTCCAGGAAT 4942 29 100.0 36 ............................. AAATCAACCATATTGGTTCCATACAGAATTTCAAGA 4877 29 100.0 36 ............................. ATATCAGAAAATAGATTAACAAGGGGACTTAACTGA 4812 29 100.0 36 ............................. CTCTATTTTTACGCTTATTAAATTCAACAATATTTC 4747 29 100.0 37 ............................. AAGTTTTAAACTCATCTATAAAAAAATTATCGCTAGG 4681 29 100.0 36 ............................. GCGTTTTTGCATGGGATGAAGTTCAAAACGAATTTA 4616 29 100.0 37 ............................. TAAACTTAAATAAATATAATCCATAGTAACCTTAGCA 4550 29 100.0 36 ............................. TAAATATTAAACTATTCTTACAGATGACTTACTACA 4485 29 100.0 36 ............................. GAGTATATCAAGCTGTAGAACACAAACATGCTACAT 4420 29 100.0 37 ............................. ATGGGTAAAAGTGTTGTAAGATTGCTAGTAACAGCAG 4354 29 100.0 36 ............................. GATGTTAATAAGCGTATTAAAATAAAACCACGTAAA 4289 29 100.0 36 ............................. GTTGAGAAAGTGCAAGGTGTTAATAGGAAGGTTAAA 4224 29 100.0 36 ............................. TGTCGTTTTCGGTGGATTAACTCTTTTATTTTTAGC 4159 29 100.0 36 ............................. GAAGTTACATGAGCATTATTTATAATTGTAGTCTCA 4094 29 100.0 37 ............................. CCCAAATGGAATATCAACAGGATTACCAATATTAATA 4028 29 100.0 36 ............................. TTATTACTTGTTTAACGAGGTGTACACCTTAATTTT 3963 29 100.0 36 ............................. TACCAAGCAAGCCATAAAGGATAATTTACTTCATTA 3898 29 100.0 36 ............................. TGACTAGCATTAGTAATATTTAAGGCTAAGATATTA 3833 29 100.0 36 ............................. ATATTTATTTACTTAACAAATATATATTAGTGCTAC 3768 29 100.0 36 ............................. TTCTGTGGAGAGAAGCTGTAGTGGGGAGATTAGTTA 3703 29 100.0 36 ............................. CCAGCTTCTTTTAACTCAGAATAGCTAGGTTCAACC 3638 29 100.0 37 ............................. TTCAGGATGTTGAGATTTAAGAACACGACAATCAGGG 3572 29 100.0 36 ............................. TTATTCACACATCAATGACAGATGTTCTTTTATCCC 3507 29 100.0 36 ............................. TGTCCTAAATTAGATATTCAAATTGAAGAAGGAACA 3442 29 100.0 36 ............................. GTGTTCATTATTACGTTGATGATACTGGAGTATATC 3377 29 100.0 36 ............................. CAAAAACACCTTTTAAAATGACAGCTTACTGTGAAA 3312 29 100.0 35 ............................. CTATTAATGATATATCCGGATAGGCGGGGTTGAAT 3248 29 100.0 36 ............................. AGATTATGCAGCACTTTTTTTGCTTGAATATCGTTT 3183 29 100.0 36 ............................. TAAATTCATCTATAAAAAAGTTGTCTGAAGGAATTA 3118 29 100.0 37 ............................. TTTATTAATTTCTTAACTATATATTACTACAAACGTA 3052 29 100.0 37 ............................. AAATAATTAGCAACTTCATTCTTAAATCTTTTAATAT 2986 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 2920 29 86.2 0 .................GAA....C.... | C [2893] ========== ====== ====== ====== ============================= ====================================== ================== 78 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTTCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTTATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //