Array 1 412780-413458 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFLMK010000001.1 Streptococcus suis strain 2135990 Scaffold1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    412780	    32	 100.0	    34	................................	TTGACTTCTTCAAGAACTTTTTATACAATACTTG 	
    412846	    32	 100.0	    34	................................	TGTTTAACACCATATCCTTGTACAAGTTTATCGT 	
    412912	    32	 100.0	    34	................................	TTCAAATATTACCTCCAAATTCTTGAAAGATATC 	
    412978	    32	 100.0	    34	................................	TATGTTTTCGGCAGGTAAAGAAGTTATGTACATT 	
    413044	    32	 100.0	    34	................................	ATTCCCGCAAAATATAAGATACCGTTTAAATCAC 	
    413110	    32	 100.0	    35	................................	ACTGTACAACCTGCCCTTGATGTCAATAGGTTCTT	
    413177	    32	 100.0	    34	................................	ATTCGTATAATAAAATTCTCTATTAGAATAAACA 	
    413243	    32	  96.9	    33	....................A...........	ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC  	
    413308	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG            	Deletion [413363]
    413363	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG   	
    413427	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                  	
==========	======	======	======	================================	===================================	==================
        11	    32	  94.9	    33	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCATTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATTCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTTCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGATAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTGCAGATAACAGGCGTAACGACCTCTCATGCCACGGCTGAGCACGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 8.95
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-18] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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