Array 1 813490-815645 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022810.1 Desulfuromonas sp. AOP6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 813490 32 100.0 34 ................................ TGTTTTAAGCTGTTAAAACGGCTAGATATGTCAA 813556 32 100.0 34 ................................ ATTGCCTGGTCAACGGAGCGCAGTGGAATGGGCT 813622 32 100.0 34 ................................ TTACCGTACCAAGCGGAAAAGGACAAGGTAGACC 813688 32 100.0 33 ................................ GTCGCCAAATGTAGTCAATCCTTGCAGTGCTGA 813753 32 100.0 35 ................................ AGACCGTTGCTAACACGATGAAGGTTACTCAGCAG 813820 32 100.0 35 ................................ TCAGCCCCGGTTTGTAGGTGCGCTCGAAAGATGAA 813887 32 100.0 34 ................................ TGTTGAAAGTCAAACGGGAAGTCAGACACATAAC 813953 32 100.0 34 ................................ AAGTCTTGCCTGCTCAAATTGTAACACGGCAGTC 814019 32 100.0 36 ................................ TATCCGATCTTGATGAGACTGCGATCAGGTATGGAA 814087 32 100.0 34 ................................ TGGTACTCAGGGATTGCAGCTTTATTATAACTCG 814153 32 100.0 34 ................................ ACGGTCAACCTCCCATCCGCTATCAGACCTGAAG 814219 32 100.0 33 ................................ TCGATGAAAACGGCAAGCCTGTATTTACCCCAG 814284 32 100.0 35 ................................ CGCTTTCCGCTATGGAAACAGACATAGGGATAAAA 814351 32 100.0 34 ................................ TCAAAAAACAGCATAAATAAACTAACCGGAGTTT 814417 32 100.0 34 ................................ AGGACGCAAGACTCGATGTGCCCTTGCTGATGGA 814483 32 100.0 36 ................................ TGCGATAACCTCGACGCTGCTATCGAAGCCCACAAA 814551 32 100.0 34 ................................ AACTCGAAGGGAGAAAGTAATGGAAAATTGGAAA 814617 32 100.0 35 ................................ ATGTTCGGTGGTGTGGTAGGTGTTGTTTTGATGGC 814684 32 100.0 33 ................................ TTTGGTACAGGGTTGGCACAAACTGGGTAGACC 814749 32 100.0 34 ................................ AAAAGGGTGTTCCCCGCCTGTTTCGACACGGAAT 814815 32 100.0 35 ................................ CCGTTACGCTCGCCCGCTATTAGAGGGTTTGGGCG 814882 32 100.0 35 ................................ TACCTTATTGGCTATTAAAGCACCGAAAGCCTCTT 814949 32 100.0 34 ................................ GAAAAGGGCTTGATGACCCTCGGGGAAACCTCAT 815015 32 100.0 35 ................................ ACGCTGGAAGGCTCGCACATGGCTACAGTGGGCGA 815082 32 100.0 35 ................................ CTCGTTGGTGCAGGGCATATGCTTACCGACACCGG 815149 32 100.0 34 ................................ ACTGAAATGTATGCGGAGGGCTTGATTAAATGAA 815215 32 100.0 35 ................................ ACGGCTCAAGACCACATGGCAACTTAACGGCCTTG 815282 32 100.0 35 ................................ TTCGTCGGCACGTACAATCTGCGCCGCTACTTTAT 815349 32 100.0 35 ................................ GAGATTGACGGAGTAATCTATCAGGTGGTGCTTGA 815416 32 100.0 34 ................................ GATGTAGATTGGCACGTAACCAGATAAGGAGATA 815482 32 100.0 34 ................................ TTCCAGGATTGCTCTTGCATAAGCTTGGGGAGAA 815548 32 100.0 34 ................................ GAAGCATGGTTTGCCTATGACGCACTAGACGGGG 815614 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 100.0 34 GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC # Left flank : CATAGATGACTATCCGCCCTTTGTGTGGAGATAAGTCATGATGGTGCTGGTCAGTTACGATGTTTCAACCATCGACCGCACAGGTGCCAGGAGGTTGCGGCGAGTTGCAAAGATTTGCCAGAACCATGGTCAACGAGTGCAGTATTCCGTGTTCGAATGTCTTGTTGACCCGGCACAATGGACTTTTTTGCGGCAGCAGCTTGTAGAAGTGATAGATGAGAACCAGGACAGTTTGAGGTTTTATTTTCTCGGGGCTAACTGGCAGAAGCGCGTAGAGCATATTGGTGCCAAGCAAGCACTGGATCAGGAGGGGCCGCTGATTATCTAGCGAACCTCAAGCGGTGGAGATTTGTGTGGGAGGTTCGCGTAGCCAGAAGTCTTTGAAAGTAATCGATAAATCTGAATGGTCGATTTAAAACGTGTTTTTTTTTATGACTTTAGCAATGGTTCGCACAAGGTCGAAAAGAAACAATGCATAATCATGCTGTTATCAGCATGCG # Right flank : CAAGTAAGGCTATACTAGTCGTCCCTGAAAAACTCAAAATTTCGCCTTCAGGCGACAATCGAATAAAGTTCCATGCTCAAGCCAGGTGAGTGTATCAGTTCCCTGGCAGCCCAAATGGGTCGTTTAAGCAACGTCGGCAGCGATTTGAGCCGTTCCAGTTCTTTGAAAACAAGCCAAAGAAAAGCCCGCAGGAGCTTTCTCAGGTTAAAACCGCAGGCGGCGAGGATGGCGTTCATCTTGTCGCCGTCGGTTCCCTTGAGATAGTTGCGATCCATCCGGTTGTCCTGCTTCATGTGGCCGATCACCGGTTCGATGGCGCTTCGCCGCTTGAACCAGCGCCACTCATTCGGCTTCATGCTCTTTTTTCTCCGGTTGGCCAGATGAACGTTGGTCTTGCCCAGTTGCTTCGGGTTGCCCTTGTAGCCCTTGTCAACGTAGGCATTTTCGGCTTCCCAGCCAACCAGGCGCTTGATTTGCTTCAGTGCGCCTTTGAGAGTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 817213-817441 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022810.1 Desulfuromonas sp. AOP6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 817213 30 100.0 35 .............................. TGTTCATGTTAAAGCCATGGCGCAATGCTCACAGT 817278 30 100.0 37 .............................. GAGGAAATCAGGCGATTGCTGTTGGCGCAGCGGGAGT 817345 30 100.0 37 .............................. GAGGAAATCAGGCGATTGCTGTTGGCGCAGCGGGAGT 817412 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 CGCCCCCCGCACGGGGGCGTGGATTGAAAC # Left flank : TCCATGTTCTTCGAGCCGATCCGCTTACGCCAGCGCACCAGGGAACTCGGATCGAGCGGCAAGCGATGGATGAAGAACTCAAACCCGCAGAAAAACTGCCAGTACGGGTTTTCCAGCAAACGGGCCACTACGGATTCGTCGCTCTCGTCGAAGGCGTGCTTCAAGTAGTGCAGACCAACCATTAACCGGGTGGATAATGCCGGACGCCCCTTGTCGGCATACAGGCAACCGAACTTGGCATCAAACACCGACCAGTCGATCTGGTTGGCCAGCACGAACAGCGGATGCTTCCTGTCAAGGATCTGGTCCAGGCGTGACCGAAACAGGTCGGCCTGATCTTGCTGTTTTGGTTTCTTTGGCTTCATAAAATCACCAGAAATCGGGGTATGAACTCTGTTTTCTGGTAATTTTATCAATCATAAACAGGAAAATAAATATTTAATTTCAGGCACTTATATTTTTTCAGGGACGACTATACTATGAATAAGACAGTGAGGGGT # Right flank : CTCGGGGATTTGGCGCATTTCTTTATAAAAGTAGGGGCGCCGCCTGCGGAGGTGTGATCCTAAACAGTGTGATTGATAAAACTTAAGTCGATTTGTCATTTTCTGACTTGGGTTGCCATCTGGCAGCCCATGGAAATTGCTTGTCGTTTGTCTCACTGAGTGTGTCAGCTCCTTTATTTGAGGCACGTTTGAGGAACGAACTGGTTTGCATAAAATTGAAAAACGAAAAATCCCGCCTAAGTCGGAAAAAAATCGGCCTAAGTCGGAAAAAATTGAGTTAGAGAAATCAAATAAATAAAAACAGGGAAAATTTTTCTGGGTTTTTTCCGACTTGTGTGGGATTTTTTTGGACTTAGGCCGGATTTTTTGATTCTGGATATTGTGACGATCAAATCGAAAAGGTGGTTTAAATGCCCCCTTTCCCTTTGAAGATATGAAGTGTTTACAAAAGGGGAGGCCGGTTGCCACACTCAGTGTGGCAAATGGCAGCTCCTAACAGG # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCCCCCGCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1875718-1873107 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022810.1 Desulfuromonas sp. AOP6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1875717 32 100.0 34 ................................ GGAAGTATCTTGCCATTTCCACCTCCGGCGAAAA 1875651 32 100.0 34 ................................ TGTATGTTCTCATTCGTCGCTTGATTGAGCTTGC 1875585 32 100.0 34 ................................ TGGTGGGTAGGCTCGATTTTGTACTTCAAACTTA 1875519 32 100.0 34 ................................ CTGGAACGTCGAGCAGTCGGGCGCAGAAATTACC 1875453 32 100.0 34 ................................ TGATCTGTGCCTAGGTATTATCACTCCTGATGAG 1875387 32 100.0 34 ................................ AAGCACCTTGTGCAAGGTATTGTTTATCACCAGA 1875321 32 100.0 34 ................................ AAGATGGTCAAGCGGCTTTTTTAAGTCGTTGGCC 1875255 32 100.0 34 ................................ TCCGTAAAGATCATCGTATTCAGTGAATTTAACC 1875189 32 100.0 35 ................................ ATTGGATGGTTAGGCGTGAAAGGATCTGAGATGGC 1875122 32 100.0 34 ................................ ATGGCCCGCTGGTATCAGCTGCAGGATGACGCAG 1875056 32 100.0 35 ................................ TTCTGGACTACAGTCCTTCCACCCATGTGCCGCAG 1874989 32 100.0 34 ................................ GCCGATTGAGTTTGGAGCTACCAACCCGTTATAA 1874923 32 100.0 35 ................................ AATCCAGATCGGCTTAGGCGTCAAACCTCGAGAGC 1874856 32 100.0 34 ................................ CCTGTCGTGTGAACAAGCGATGCGAACCCAGGTA 1874790 32 100.0 33 ................................ AAAAAGTCAAAAGTGTAGTACTCGCCGCAATGT 1874725 32 100.0 34 ................................ ATCGATAAAACGATAGACGGTACAACGGTGACAC 1874659 32 100.0 35 ................................ ACCAAAACGCAGACTATCGGTATATCCCCGAAGAG 1874592 32 100.0 34 ................................ TCGTGGGCTTACTGTTTCTGCCTTTATTCGGCAA 1874526 32 100.0 34 ................................ TGTGATATCTTCGGGACTTGCTTCAGAGGAAATC 1874460 32 100.0 36 ................................ AGGCTACACAGCAACCGGAACATTTGACCCCTCATG 1874392 32 100.0 34 ................................ AAGCAACGGATTGAACATCCTAGACATAGACTCA 1874326 32 100.0 34 ................................ GATCTAAGCAACTTGAATTCCGTCTTTTAGCGAC 1874260 32 100.0 34 ................................ TTGAGAAGAACGTTCTTATCATTAGCAATATCGA 1874194 32 100.0 33 ................................ GTTCGGCATACGCCTCACCCTTTAAGGTATCCG 1874129 32 100.0 33 ................................ ACCAAAACGCAGACTATCGGTATATCCCCGAAG 1874064 32 100.0 33 ................................ TCGACAAAACGATAAACAGTACACCGGTGACAC 1873999 32 100.0 35 ................................ CTGCCCTCATCCGTCACCATCATCAGCTTTGCCGG 1873932 32 100.0 34 ................................ ATCTTGTTTAAACTATACTATACCCATTGGGGAC 1873866 32 100.0 34 ................................ ACATATCAGCAGACAACAAAAAAGCCCTCACCTC 1873800 32 100.0 34 ................................ ATCTTTAGCCTGTCATGGGCAAGCAATGCGTTTA 1873734 32 100.0 36 ................................ ATAAAACGGCAATATCCCCACGCTAAATGGAATAAC 1873666 32 100.0 34 ................................ AATTCAAGAGGCTCCGCGATATGCGCCTGATAAA 1873600 32 100.0 33 ................................ CCAGGGGTCAACGCTCAAGGTTTTGTCTGTTAT 1873535 32 100.0 34 ................................ TCTATCTTTTGCGAGATTCCTTCGCATCCTACAT 1873469 32 100.0 35 ................................ TATGTTGGCCTTGACTTTAACATCGGAGGGACATG 1873402 32 100.0 34 ................................ AGTCATCATTTTAACCCCCCTTGATTAAATGTTT 1873336 32 100.0 34 ................................ TCAGTCAGTAAACTGTCAACCTCTTCGACAGCAG 1873270 32 100.0 34 ................................ TCCTTATTTTTGAGCTTTTAAAAAAGCGACCTTA 1873204 32 100.0 34 ................................ TATGGCCTTCATACAACCGCAGGTTAGGCCGACC 1873138 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 100.0 34 GTCGCCCCCCGCGTGGGGGCGTGGATTGAAAC # Left flank : ATGGATGATTATCCGCCCTTTTTGTGGAGATGAGTCATGATGGTGCTGGTCAGTTACGATGTTTCAACCATCGATCGCAAAGGAGCGAGGAGGTTGCGGCGGATTGCAAAAATTTGCCAGAACCATGGTCAACGAGTGCAGTATTCCGTGTTCGAATGCCTTGTCGACCCGGCTCAATGGACTTTTTTGCGGCAGCAGCTGGTAGAAGTGATAGATGAGGGTCAGGACAGTCTAAGGTTTTACTTTCTCGGGGCTAACTGGCAGAAGCGGGTCGAGCATATTGGTGCCAAGCAAGCATTGGATCAGGAAGGGCCGCTGATTATATAGCGAACCTAAAGCAGTTGAGCTTTTCCTCAGGGGTTCGCGTAGCCATAGATCTTTGAAAATAGAAGATAAATCTGAATGGTTGCCTAGAGGTGGATATTTTTTTGTGACATTAGGAAGGGGTTCGCAAAAAACAGGAAAGAAACATAGTGTAAACATGCTGTTAGCAGCATGCA # Right flank : CAGCCCCGGAAAATAAGGGACACTCCCCGGTTTTTCCTTCGGAGGCCCCAGCTTCCTAGACTTCAATGGCTGATTCAGCTGAAATTCCAACATATCAATGAACGATTCCGACCCAAATGGCCTTCCGGAGTTGGTGGCTCTGCGGATGGTTTTGTCGGGCTCATCATCTTCCAAACTCACAAATTCTGTGTACGCGCTCTGCTCCTGTGAGAGCATTGTTGTGGCGCAGGCTGTTCACGCCTAACCAATGCGTCAACGCGGCTTGCTTTTTCCGCTGGCGCACCAGAGGCAACTGGTTACGCCTGAGTTGTGCCCCGATAATATGGGGAGTGTCCCTGGTTTTCTCTGGTTTTGGTTAGTTCTTAACGAACATCTTCAATACTCAGGTTTTTCCGCGCCCCGGCTGACCCCGTTTGGATCTCATCCCCCACACATTTGCCGATGAGGCTTCGCCCCAAGGGGGAGGCGGGGGTGATCACGACGATTTCACCGGAAGCACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCGTGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //