Array 1 46748-47617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUO01000007.1 Escherichia coli strain MOD1-EC6629 MOD1-EC6629_7_length_188903_cov_28.3992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46748 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 46808 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 46868 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 46928 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 46988 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 47048 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 47108 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 47168 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 47228 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 47288 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 47348 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 47408 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 47468 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 47528 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 47588 28 85.7 0 ....................A...C.CT | T,C [47608,47612] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56679-57967 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUO01000007.1 Escherichia coli strain MOD1-EC6629 MOD1-EC6629_7_length_188903_cov_28.3992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56679 28 100.0 32 ............................ AGTAATTCCCCAATAATTCCCCGCGCAAAAAA 56739 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 56799 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 56859 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 56919 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 56979 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 57039 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 57099 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 57159 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 57219 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 57279 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGCACGTAATGATG 57339 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 57399 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 57459 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 57519 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 57579 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 57639 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 57700 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 57760 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 57820 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 57880 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 57940 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCAGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94038-93336 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUO01000008.1 Escherichia coli strain MOD1-EC6629 MOD1-EC6629_8_length_168936_cov_29.3094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 94037 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 93976 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 93915 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 93854 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 93793 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 93732 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 93671 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 93610 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 93547 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 93486 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 93425 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93364 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110542-109537 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUO01000008.1 Escherichia coli strain MOD1-EC6629 MOD1-EC6629_8_length_168936_cov_29.3094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110541 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 110480 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 110419 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 110358 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 110297 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 110236 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 110175 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 110114 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 110053 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 109992 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 109931 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 109870 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 109809 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 109748 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 109687 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 109626 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 109565 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //