Array 1 103-1433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUH010000013.1 Listeria seeligeri strain FSL L7-1455 NODE_13_length_72468_cov_90.901963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 103 29 100.0 37 ............................. AAAATTTTCCACCTTTCTAGTTGTTATTGATAAAAGC 169 29 100.0 37 ............................. AAAGCCGTTTACGATAAGTATACTACTTGGTACGAAC 235 29 100.0 36 ............................. AAGACTTTTGAAGAGTTCAATACGTATGCCATTGTT 300 29 100.0 37 ............................. GAGGGTAAATATTCACACTTTTTCCTAGAATCAAATT 366 29 100.0 35 ............................. GTGTAAGAAGGCGCACCTGCCGTAATCGTAACTTT 430 29 100.0 36 ............................. ATCAAATACGAAAATGGAAATCAACAGAAAAATGGT 495 29 100.0 36 ............................. ATGGTCAAAGCCAAAAAGTTTGCTAAATTTGAAAAA 560 29 100.0 35 ............................. GATGCCGCTTTTGCTGTTTGTGAGATAGGTGAAAT 624 29 100.0 37 ............................. TAATGAATACGGGCATTTTCACAAAGATATAAGTAAA 690 29 100.0 35 ............................. GAGGGAGAAGATGAGCTACTAAAGAGTCAAGCATT 754 29 100.0 37 ............................. AGAGCTTATAGAGACACTACAAAAGCACAAAGGTCCT 820 29 100.0 36 ............................. ACAAAAGAACGAGAAGACTTATATGTAAATCCTACG 885 29 100.0 36 ............................. TAATTTCGGCCTCGGTCATACCCACTTGCTTTCCTT 950 29 100.0 36 ............................. GAAGTTGATCAAGATATAGATTTGTATACAGATTCT 1015 29 100.0 34 ............................. CGCCTTGCCCTCCGCCTGTGTTTGTGTGTAATTC 1078 29 100.0 36 ............................. ATTGTTCGAAAAAAATTCAATTGTTGAGTAAGGACC 1143 29 93.1 37 ........................GG... TCTCCCGCTTTGCCAAAAGAACTATTATAAGGATCAA 1209 29 100.0 37 ............................. CATCGTCGCGGCTCGATAATGTGGGACACGGGAGGCG 1275 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 1340 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 1405 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 21 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAAGGAAAGAATTTGGCGGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 13-1211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUH010000070.1 Listeria seeligeri strain FSL L7-1455 NODE_70_length_1220_cov_3.752406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 13 29 100.0 36 ............................. CGCCACTTCGCTATAAGCTCGATTTAGCGGGCGCAG 78 29 100.0 37 ............................. AGGTAATCCCTGTTGTTAATCTGTATCAGGATTACCT 144 29 100.0 36 ............................. ATCTTCTACCTTATGTTTTTTACCGCTAGAGTCTAA 209 29 100.0 36 ............................. GCTTCAATAAAGCGATTTCTTTATCATGATCGTTTT 274 29 100.0 37 ............................. GTATTCTAGCGCTTTGGGTGTGGTTACTTTAGTGATA 340 29 100.0 36 ............................. GTATTAACAGAAGTATTTGATCGTTACGAAAAAACA 405 29 100.0 37 ............................. AGCGCTGCATTTCGCTGGGGGCTCGAAAAGGGGGAAG 471 29 100.0 37 ............................. AGAAGAAGCGCTAGCGCTACATACGCCCATTTATTAA 537 29 100.0 34 ............................. CGCCTAAGCCCGCAATACAAAGCTAATTTAATCA 600 29 100.0 36 ............................. GAGTTCTCGTCAAAGTAAAATTCACCTTCGCGTGTT 665 29 100.0 35 ............................. AGATCAGAGACTATAACAGGCAGTAATGGTTCAAC 729 29 100.0 37 ............................. ATATGTATCTTGCGAAAAAACATGTAGATTCATTACT 795 29 100.0 35 ............................. GTTAGACGAATAGCAACTGGATATGCTTGTTCAAA 859 29 100.0 36 ............................. TTCCTTATTTGCTTTCAGCTGCGCGTCAGAGGTCGT 924 29 100.0 36 ............................. AGAAAAACGTCCCCTTCTTGATCCCAGTGCTTCAGC 989 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 1053 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 1118 29 89.7 35 ..........T.............C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 1182 29 86.2 0 ........C....C..A...........G | T [1208] ========== ====== ====== ====== ============================= ===================================== ================== 19 29 98.6 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CACACCTGCGTCG # Right flank : CCTTTCAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1627-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUH010000061.1 Listeria seeligeri strain FSL L7-1455 NODE_61_length_1703_cov_2.750308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1626 29 100.0 36 ............................. TTGCTTCCGCTTGTAATCGTTCGAATCTCCATCAGT 1561 29 100.0 36 ............................. CGTCAATGGAGCGTTCCAAATCCGTAGCTCCTTGAC 1496 29 100.0 35 ............................. ACCAAAGAAGAAGTAGTTACGCCCGCATCGGAAGA 1432 29 100.0 36 ............................. ACTAGAAGGTGGAAAAACATATACCTTAGAAGAAAC 1367 29 100.0 34 ............................. TAAAGAGTATCTTCTGTTCTTGACCTGTCTCTGG 1304 29 100.0 36 ............................. AGCCTTCTTCTTCTAAGGTGAATTTTTCTGGTAGGT 1239 29 100.0 35 ............................. AAGTTCCCATGTTCATCTTCACTGATGGCTTCATT 1175 29 100.0 35 ............................. CTAGCTATTTCGGTAAACAATTGCATAGCTTCCGT 1111 29 100.0 36 ............................. ATTCCTGGGACTGATTATAGATGTAGATGTACAGCA 1046 29 100.0 36 ............................. GAAGAACTTCCACCAATATTTTCATCTGAGTATTCT 981 29 100.0 37 ............................. AGAGATTACAGAGCAAAAGGATGCTTTAATCGCAGAA 915 29 100.0 37 ............................. AATATTATATTGTGTAAAAATATCAGCTGTAGGTTCA 849 29 100.0 33 ............................. TAGGCATGGTCGTTTCACTAATTGCAAGCTTTG 787 29 100.0 35 ............................. TCCAGATCAAAGCAAATGGTATAAATAGAAGCACT 723 29 100.0 37 ............................. GCTGCAGTATTATAAACAGTAGTTTCTGCTTCGCTTA 657 29 100.0 34 ............................. TAATCTTCATCTAGTTTTATTCCCATCACCACAT 594 29 96.6 37 ...........................C. TTTTTTGTCGGTCGCGATGAACAAGGGTTCTTTTTTT 528 29 100.0 37 ............................. ACTAAATTATTTTATATGGGAGCATTAGATTTTATAA 462 29 100.0 34 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCCA 399 29 100.0 37 ............................. ATATTAGATTCAAAAATTCCAATTACATTTTTCTCCG 333 29 100.0 36 ............................. TCAACATCTGAACTCAAAGAAAAATTAGGGACTCCC 268 29 100.0 35 ............................. CTTACAATGGCCGACAAAAAGAATTATTTATTTAC 204 29 100.0 37 ............................. TAGTTCCTAGTTCTCTTTTTTCATCTGTAGTCAAAAC 138 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 73 29 96.6 0 .......C..................... | ========== ====== ====== ====== ============================= ===================================== ================== 25 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAG # Right flank : TTCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCAGTATTAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 762-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUH010000084.1 Listeria seeligeri strain FSL L7-1455 NODE_85_length_806_cov_3.074074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 761 29 100.0 34 ............................. CTTTGCAACTTCGTCTTGTTTCACTTTGTATTTT 698 29 100.0 37 ............................. ACCTATTTTACGTTCTGTTGGGTAATTGATAACTAGT 632 29 100.0 34 ............................. CCTGTGAGCTGTTTAACTAGTCCTTCGTCTAAAC 569 29 100.0 37 ............................. ATGTATTTCGTATGCAAATATTGAATAGCGGATGTCG 503 29 100.0 37 ............................. GTTAATGCCCTTTGTTTCCATTTCTTAGATTTCGAAG 437 29 100.0 36 ............................. TCAGCTTAGTTGTTTCTGCCCATTCCTCGTTATAGC 372 29 100.0 37 ............................. TAACTCACTTCCTCTTCATCTACAAATAGAGCACTAT 306 29 100.0 35 ............................. AAAGTCAAATGGATCAAGTAGTTCTAAAAGTTATA 242 29 100.0 36 ............................. CGCGTTGGATTGGGTCGCCCTGCGATTTTTGTTCAA 177 29 100.0 35 ............................. GATTGTTGAATCGCTTTGATTAAATCTGCATTACT 113 29 100.0 35 ............................. AAATATACGATCCATTCGCCGGCGCTTCTGTTCGG 49 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATGTAAATCTATTTCGAAGGTAATTGACGATGGAAAATTTGTTC # Right flank : TTGGCTAAACTTGATATTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 47799-48476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUH010000018.1 Listeria seeligeri strain FSL L7-1455 NODE_18_length_56428_cov_88.359869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 47799 29 96.6 36 ............T................ TAAATCAAAGTTTTTATGTTTGCGGTGTGAACGAAT 47864 29 96.6 34 ............T................ ATGCAAAAGGTTACTGACGAGTTCACTCAACTTA 47927 29 96.6 37 ............T................ ATTAATATTTTCTTTTTTTTATCCATATATCATTCTC 47993 29 96.6 35 ............T................ CGTGCTATTACGAATTAAATTATGACTAGCTCCGT 48057 29 100.0 36 ............................. GCAGCTGTAGGTGGTTTAATTAACAAAGATGATTTA 48122 29 100.0 36 ............................. TGTTGCCAGCCTGCTGCAACTTCTAATTGACTTGCT 48187 29 96.6 37 .........G................... AAATTTACATTGTTGGCGCGGCTCTTGAACAATCTTT 48253 29 100.0 36 ............................. GATTTATTCACTAGCAAAAAAATGTCTTTTTGCCGA 48318 29 100.0 36 ............................. TTAATTATCCAGCCATTCAGAGTTTCTTAAATCCTT 48383 29 100.0 36 ............................. CGAGAACAAAAACTATCATAAATATGATATAATTAT 48448 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 98.5 36 GTTTTAATTACTCATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATGGGTCTCTGTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCATTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGTTTTAAGAGTTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCAATTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTCATTGTGAAATGTAAAT # Alternate repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 54699-56419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUH010000018.1 Listeria seeligeri strain FSL L7-1455 NODE_18_length_56428_cov_88.359869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 54699 29 100.0 35 ............................. CAATACAGCGAAGTTCCGTTTGAAATCATATTAAG 54763 29 100.0 37 ............................. ACCTGAGAAATTCACATTGGAAGAAGAAGGTTTGGAA 54829 29 100.0 37 ............................. AGAAGGGAAATTGCCCCAATATGGTGATACAGTATCA 54895 29 100.0 38 ............................. GCAACACCCACGGTTAAAGCTTGTTGTATGTCCTAAAA 54962 29 100.0 37 ............................. TACATTAACACTTTTAACACGCAGAAAGTAACACAAC 55028 29 100.0 36 ............................. GAATTTGGCAATAATGTACTTCCCAAAACAGCTAAT 55093 29 100.0 37 ............................. ACACAGGTACGGTTAATATTATCGGTTAACGAGTATA 55159 29 100.0 35 ............................. CCAGATAAAACCTGGGATACCTGCTTTTTGATGCC 55223 29 100.0 37 ............................. GTGGTAACAGCGTTTTTGTTGCCGATAGGTGCGCTCC 55289 29 100.0 36 ............................. TGTTATCTACTCCGTACTGTTCAATCAATGGCAACC 55354 29 100.0 34 ............................. AAATTTGAAGAAGTAAAAGAACCGGATGAATTGG 55417 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 55483 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 55547 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 55612 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 55676 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 55741 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 55805 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 55870 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 55934 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 55998 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 56063 29 100.0 34 ............................. GTTGAAGAAGTGGAGGGAAAATAAATGACTTTGA 56126 29 100.0 39 ............................. CTAATAGTAGACGATTATTGGGACGATGTATTCCGACAT 56194 29 96.6 37 .......................A..... TCTTATTTTTCCTCCTCTAAGTATTTAAAAATTACCG 56260 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 56327 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 56390 29 86.2 0 ........C....C..A...........G | T [56416] ========== ====== ====== ====== ============================= ======================================= ================== 27 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //