Array 1 34760-31725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGII010000010.1 Prosthecochloris ethylica strain N3 NODE_19_length_100274_cov_111.693052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34759 30 100.0 36 .............................. GTGATCTCGCCCGTCGTCTTCGAGGAAGCCGAGGTG 34693 30 100.0 37 .............................. CAAGGAAAGCAAAACCTGATTCTATCGCCCCACTCTC 34626 30 100.0 38 .............................. TCGTTATTCCTGCTGGTGATGAGTCGCAGCCGGTTTGC 34558 30 100.0 37 .............................. GCGGAAGAACCGTAAATGCCATCGTTTATCCCCCGGG 34491 30 100.0 35 .............................. AATAGCTACGCGTGGCCTGCCCACGGGACGCAAGC 34426 30 100.0 36 .............................. CATATCACATCCCCCTTTCAAAAATCTCCCGCTCGT 34360 30 100.0 36 .............................. ACGGTCATTTCCAACGCAACGTAGCGGAAATCGTTT 34294 30 100.0 38 .............................. CTATAAAGGCTGTTTTTGTCCAATCCATAAATTGTTAT 34226 30 100.0 38 .............................. TTGCAGCCCGCCTGCCGGCACGAAAACAGCCGCTGGTC 34158 30 100.0 38 .............................. CAGGTCATCCGACCCTCTCGGTGAGCGAGAGCTTCAGG 34090 30 100.0 37 .............................. CAACACCTGCACAAACACATTGATCTATCTGATGTAC 34023 30 100.0 36 .............................. TTCTTGCAGGGAAAGAGACCCTTCAGGGGCTGGCGT 33957 30 100.0 36 .............................. ACATTGCCAAATGGTTTTTTTTGATAAGATTTCTGA 33891 30 100.0 36 .............................. GCTCTCGAAGTTTTTGAACGCCCTCATGGCTTTTTC 33825 30 100.0 38 .............................. ATTTGCTCGATCCTCCAGCCATACTCCGACGTAAAGCG 33757 30 100.0 38 .............................. TTGTAGCTGTCGATAATCATCTTCAGCTCATTGGCCTC 33689 30 100.0 36 .............................. CTCCATGCGCTGGCCCCATATCAGAGTATGAGTGTC 33623 30 100.0 37 .............................. TCTGTAATTTTGTCATGCGGAACAATGTAGCCGTTGC 33556 30 100.0 37 .............................. GTCTTTGTGAAAAATCCGCCCTTTTCGGCGGCAATTC 33489 30 100.0 37 .............................. GACGTTTTTGCGCCTGCAGCTCCACCTCGGATCGCCG 33422 30 100.0 36 .............................. TACATCTCCCCTGACGCAACGTTCCCGGCGGGTTTT 33356 30 100.0 36 .............................. GCAGCATCTCCGTTACGGCAAAATTGACGGACCTTT 33290 30 100.0 37 .............................. ATGTTTGAACTGGTTTTGAACGGGCATACATATCCCC 33223 30 100.0 37 .............................. TCTGACGCAGAATCAAGAAGCGTGTGCGACCGCCGTG 33156 30 100.0 38 .............................. TCGTAGCCGGAGGCTTTTCTGCCTGGCTGTCGTGGGAG 33088 30 100.0 38 .............................. TCAGGCATGGTCGGCTATTCCCGATCAGATGTGGCAAC 33020 30 100.0 38 .............................. TGGGTGCGCCTGTAGATCTTGAAGCACACCCGCAACGG 32952 30 100.0 37 .............................. TCACAATCGCCTTGTTCTGGGCGCGTTTCACCGCCAT 32885 30 100.0 37 .............................. AGATCGAGGGCCGTCATGTGCCGGTCGACCTCATCGC 32818 30 100.0 35 .............................. TCGGACTCGCTGCCAATCTACGGCTTTGCCGATCG 32753 30 100.0 37 .............................. GCGGTACTAACGCAACGATTGCTCAGCTGGAAGCCTG 32686 30 100.0 36 .............................. ATATTCCTGAAGACGACACCCCGATTTGACAACCAT 32620 30 100.0 38 .............................. TCAATTAGCCCTACGCTTTTTGCTCTTCTGGCATGATA 32552 30 96.7 36 .............A................ GTCCGGGGGAGCATGGGAAAACGACAGATATATCGG 32486 30 96.7 36 .............A................ TCACAAAAACCGGGTAAAAAATGCTGCAGACTTCGC 32420 30 100.0 37 .............................. TCAATCACTGTGAGCCGGTCACCATACTCCGCAGCAG 32353 30 100.0 36 .............................. AAAAGGATCAAGATTTCTTCATTCATCGCGTCAGCC 32287 30 100.0 37 .............................. ACGCCGTTGCGGCCGTAAATTCGTACTCCTCGAAAGC 32220 30 100.0 37 .............................. GACGTTGTTGTTGATGCGTCTGATGCTGGCGCAGTTA 32153 30 100.0 36 .............................. ACCTCAAGGAGCGGCAAACTGCAAGGCCGGAAAATC 32087 30 100.0 35 .............................. ACTTTTCATCAACTCAATCTGTCTTATCATGGCTG 32022 30 100.0 36 .............................. ACAGTAATCACCTGACTTACCTCCATTCTCATTTCT 31956 30 100.0 37 .............................. TGAAGAAAAAGGGTTGACATCGAGGTATAGATCAGTG 31889 30 100.0 38 .............................. GGCTTTCTCTGCATACTCCCGCTCCTTGGCAAGTGAAT 31821 30 100.0 37 .............................. ATCGTCCCGTGAGCCATCGCAAAGCTCTTGCGCTTAC 31754 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 99.9 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : ATCGGATAAGATGGAAGAAGCCCATCTCTGGCAGCTTAAATATTATCTGTATTATCTTAAAATATCAGGAATGGTGGATGTTACAGGAAGGCTTGACTACCCGAAGCTCAAGAAAACTCTTCAGGTTGAATTAACAAAAGATGACGAGCAGAAAATCCAGGGGGTTTTCGATGATATGACGGTCATTGTACATCAGGAAGCCCCTCCAGAGCGGATCAACAAAAAGTTCTGTAAATCATGTGCATATTATGAATTTTGCTGGGCTTAGCCTGTCTATGTATTGAAAAAGATGTCGTCGGGCAGCCGAGATAAACCTGTTAGAGAGCGGAAAACCTGCCGAAAAAACCAGCTTTGTTTTACTATCTGCAATGAAAGTAATAAATTAAAAATGTCGTCGGAGTCCCGGTTTTTTTCGGTTATCACAACGTGACGACAAATTTCAGCGATTTTAGTGATCAGACATCAATAAAATCGCCCTTCTTCAGCCGTTTACCTCACGG # Right flank : ATGAGGTCAGCGTTGATCCTGGTGGATTGAAACTGTGGGGATCGAGCAAAGCTTAGAGCAGAAGATGGTCGTGCCCTACGTGTGAGTGGATTGTCATCAACTTGTTGGTTCTTCTCGCGCCTTTGTGTTTCATTACTTTTTCGGTTGATCGGCATAGTTTTCAACCCTCCCATTGGGTGATTTTCTATTTCTGCTTACTATTGCATATGTTCCTGTTCCTTGATCCTGAGGCAGGATCAAGCTGATCACGGTCGGTGGGAGGACGTTCTGTACAGCAGGTTTTGATATTTCTCTATGGCACTTGATTATATGACACTCGATGTGCTTCGCCTGAGCCATCCGGCTTGGCGGTTGTTGCGGGCGCAGCATGCTCCGTTTATTGCGGGGTTTTTGCATCGGGTGTTTATTGTGCCGAACGTGCGGGTTCTGCCTCAGGCGGACCTGGAGGAGATGCTGGAGGACGAGCTGTTTGCGTTGCGTGAGCAGTTGGGGGATGAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 45858-46190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGII010000013.1 Prosthecochloris ethylica strain N3 NODE_39_length_57092_cov_115.910199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 45858 35 100.0 43 ................................... ATTTAGGATCAAGATTGGTGTATCTTTCATCATGGTCCTGATA 45936 35 100.0 37 ................................... TTTCATGTCTTTAGGGTCATATATCTCCCCCTTTTGC 46008 35 100.0 40 ................................... TATCGAACGCTCTCAGTGAAAAGGTATTTTGTTGCGACGA 46083 34 91.4 38 .............C...-A................ ATCTCATCGGATTTCTCATTGAGAAACAATAGGGGACA A [46098] 46156 34 74.3 0 ........G....C....-.G........A.GTGG | A [46171] ========== ====== ====== ====== =================================== =========================================== ================== 5 35 93.1 40 GTAGACAGACCCGATTGTGTAAAGGGGATTGCGAC # Left flank : ATGGATAAAGAGACGATCCGATATGCTGAATGACCCGTGGGGGATGGCACCAACAATGACTCTCAAGGGGATGGATTATTTTGCACATCAATTGACTGGAGTCCAGCAGGAGAATGTTTGCGTGCTTTCTTTTGTGTGGGAAGACCCGATTGAGTGAGGGTGACAGGATTGGGCGGCAGGGAAAGGGGTTCAGGATTGTTGGCAAGAGCAACACTCGGAATGAGTGTTGATCAGTGACTGTAGGGCCAAAACCGATGGCTCATTTATTGTCCATGTGACAGGACAGTAAAAAATCATGTAGAGTGTTATAATATCGTAGGTTATCGCCTGCAGTCGTTCCTGCTGAGCCCTGGATGTTGGGTAAATGATGAAAATTCAGTAAGATACAGGTGATCCATAACTGCAAAATCAACCATGAGTCCATTGATAGCGCTGATTTTTGGATGAGCCCTGGATTTTTGTCTGGGAGGCCTTGTCAGGCAAGGCTTTCCGGAGGTAGG # Right flank : GATATTATTAGGGCAAAGTGCTGGGCGTGAATTGGAAGGCTTTGCCGATATGTGATTTTATGGGGCGAGAGGGGCAGATGAGGCCTCTTATCAGTGCAGTCATTCAATCGAGCAACGGTTTAGAACCACCAATCAGACTGCTGGAGGATATGGCGAATAATAAGCCGATGGCTAAAAGGTGGAGGACCCAGTCCCTGAAACGTTCATTGGAGGGGTGGACAGGGGAAAAAAACTTCAAGTGGCAGGCGATATTGTTTGCCTTGTGTTTGATTTTATTTGGAGAATGGTTTCCAGACGGGCTTGAGGGCTTCTTTTATTACCTGCAAGCGGTGAGCATGCACAGGGAATTGGTGCCTTGGGCAATCAACTGGAAGCTCGTTCTTTCGGCATTGTTTATCCTGTTGATATGGTGCATTTTTAAATCCTTGCCCAGGTATACGCAGATCAAGGTACATGCTGGTCAGCCTAAGACGTACAAAGTGCTTGCTGTTTTCCTGAGT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGACAGACCCGATTGTGTAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 56380-56793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGII010000013.1 Prosthecochloris ethylica strain N3 NODE_39_length_57092_cov_115.910199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 56380 37 100.0 38 ..................................... ATGCTGCTGCTGCGGCCGGAGACTTCTTTTTTCTCGAA 56455 37 97.3 40 ...........................A......... ATTTTCTCGAGCGAGAACCTTTGCATACAAACCCTGTGCA 56532 37 100.0 41 ..................................... ATAAGTTGACCAGTATCGATAATTATCATCTTAATATATTT 56610 37 100.0 37 ..................................... GTACCTCGCAAAAGCCTCATTTGGGCTTAACCCCTGC 56684 37 91.9 36 ...................T....A........C... GCGAGACCATCATGTACTGCGAAGAGCTTCAACAGA 56757 37 78.4 0 ......AC...........T...........G.GTGG | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 94.6 39 GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Left flank : GCAGGGAAAGCTCAGACGGCTGATCGAGGTTACCCGGGACAGCGTCCGGTTCTACCGGTTATGTGAGGACTGCTGTCAGGATATCACAATTATCGGGGATGGAGAGGTGACGCATGATGAGGAGTTTTTTATTGCATGAATGCAGAACGGTGAAATGAGCAAAGGTGTGTAGAGGATGTGGTGGGTTTATGAGACGGGACTTGTGATTAATGAGGATTTAACCTGTTGTTGCAAAGAATGTTATGGCTTTTTTACACGGAGCTTTTTCTGAGACTCGATCAGCAGTGTTCAGAATGATGTAACCTGTTGAAAAATAATGTGTTGCAGGAAAAAGAACGCGAAAAGCTCCGTGCAGTAAGTGTAAGTGAAGAAAATTCAAGAATTTGCAAGCTTGTATGATGAGCGGAAAATGGCGAAATTATGATGGAGATGTTCTTTTTTCAGACATCCGTGAAAAACGCTTCAGAGAGCCTTGTCTGATGCGGGTTTCCGGGGGGAGA # Right flank : ATATTATTAGGGCAAAGTGCTGTGCATGATTCAGAGGGGTTTGAGGTCAGGCGTCAAGCGTCGGGCGGTAGGGGAAAGAGATATTGTGACGATGCAGTGTGATTCTTACTGTCACATTTGAGGAGAGGCTTTTGGCCTCTTTTTTTATTCGGTTTGGCAGTAAACGGCATTATGATCCCTGCACGCCGGTTTTTTGCGAACAGAGTGGCTGCAAATTCAGTCTCGGAAAACGATCGTTTTTTGAGAGTAATTTCCAAATTTTGTGTTTCAAAAAAATCTAAGCAGCAAGTGTTTCCTCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 93947-94871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGII010000004.1 Prosthecochloris ethylica strain N3 NODE_4_length_181135_cov_112.106367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 93947 35 97.1 39 ..................................T CGAATACCACCTGGTCCGTATAGAGGTCGAAGCCGTAGG 94021 35 97.1 40 ..................................T TTCCACCATTCCGACGACGTCGTCGATCGTCAGGCTGGAA 94096 35 100.0 38 ................................... GCAAACGTGTCGGCAGCGGCAACGGCCGCAATGCGGTT 94169 35 100.0 37 ................................... TTGAGGTTATTACTTTCTCCATCCCTTCACATCCACT 94241 35 100.0 38 ................................... TTTGCATTGGGATTAGTCGCAGTACATTCAAACCGCCA 94314 35 100.0 40 ................................... TCGTACCCCTCTTTTTCGTCAGGAAAGACTGCAGGAAAGA 94389 35 100.0 39 ................................... ATGGTATCAAGCAGGGGGACTAACCCCAAAATGGCAAAA 94463 35 100.0 39 ................................... GGTGTGTTCGGTCCGACTACGAAATAACTTTTTTCTCCG 94537 35 100.0 40 ................................... TTCCATTCGAGAATCACGGCCGCCTCATTGCCATCATAGA 94612 35 100.0 39 ................................... CATTGATCCTCCCGAATACGGGAGCGGCGCGACAGGTAT 94686 35 100.0 37 ................................... AAAGGAGAGAAAGTCCTCCCAAAAGAACGATGAAGTG 94758 35 100.0 43 ................................... TTTCCTCACTTCTTTTATTCTCCGGCATCGTCTTTTGATTGAA 94836 35 91.4 0 ...............................G.TG | T [94864] ========== ====== ====== ====== =================================== =========================================== ================== 13 35 98.9 39 CTTTTGATATAATCGTACTCGCAGAGTATTGCGAC # Left flank : ATGTCAGGCGGCACATAGAAAAACAGGTCGGATTGCTGAAAGACGTAATGACAGGGAGACTCGAGGAATATGCGCCATATAAACTGCCTTTCTGATGAACACAAGAGAGCTCCCGATCGATCGATAGTTCTATACTCTCATCCGACTGGATGAAGCAAATTTCCTCTTTCGCTCACGACAACTTGGCAACATGCCACCATCTTCTGTTTATTTTTTAACCTGTTTTAAAACATGCCGTTAGAAGAAAAATACCGAGACCTCGTTTTTTCCTGATATGAAAAACAGTCAAAAACACGTGTATTGCATTATATATCAATACGTTAACCGCACCCTTGCAACCAAACGAGCCCTGGACGTTGTTTAACTCATTCATTTTCCGTAAGATAGAAATGAGCATAATCGGTAAAATCAGCTCTTTGTCCCTTGGCATCACTGGTTTTTGCACGAGCCTTGGATTTTGCTCTGTGAGCCCTTGCCAGACAAGGGTTTCCAGAGGTACT # Right flank : GTATTTGTGGTACAAACGTCAGATCAAAACCTGGCAAACAATCACAAATATGACGGCTTGTAACCAGCAAATCACTCTACAGCAAAAAGAAAAAGAGAAGCAATCATGGAGCAATTTTTTGAACAAGGGGTGGGGAATATCTTTGGCTGGGTGGCAGGTATTGTGGCATGCATGGAACTGATTGAATATCTGTTCACAAAAAACCTCCCGTGGATTTCTCGCATGTTTCGCAACGCATTTCGATGGGGGTATCGTGCCCTGTGGCGTACGCATGAGGGCAATGATGAGCGTTTTCTTGCTCTGAATTTTTCAGGTCATCCAGTATTGCCACAACAGGCGCATGATATTCAGAAAAAAATGGGCTGGCCGAACATTGACGTGATCGACGTGCCTGTAGGAACGGTTTCGGAAGATCAGAATTTTCTTCGCACTGCAACCCGCACTGTCGATAGAATTGATCTCCTGCCCAACGAATGGCAATCGTTTGCGCTTGTCGTGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGATATAATCGTACTCGCAGAGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //