Array 1 48-991 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUG01000206.1 Allorhizocola rhizosphaerae strain CPCC 204380 contig206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48 29 96.6 32 ............................C TACCCGTGGCTCAAGTCCAACGAGTGGTATCC 109 29 96.6 33 ............................C CGGGCGAGAACCTTGCCCTCCCACGGGCGGCAT 171 29 93.1 32 ................A...........C ACGCTCGTCGACCGCACACGAGGGCTGTCATA 232 29 100.0 32 ............................. ACCAAGACCGAGGCCCTGGAGCTGGAGCTGGC 293 29 96.6 32 ............................C CGTTGTGCTGATTGGGAGCCTGTGATGACCGC 354 29 96.6 31 ............................C CGGCCCGCCGACAAGCAGCAGATCTCGGTCT 414 29 100.0 32 ............................. CGGGTAGCCTCACAATGGTTTCACGACGTCTT 475 29 100.0 32 ............................. TCGATCACTTCCATGGCCTTGTCGACCGTGGC 536 29 96.6 32 ............................C GATCGGCGTCATGCTCTGCTTCATCGGCGCAA 597 29 100.0 32 ............................. TCAGCCGCCCCCTCGACCTTCAACGCCACTGT 658 29 93.1 32 ...........................TC CTCCAATGTGGACGCGGTGACGGCCGTGGTAG 719 29 96.6 32 ............................T CCCCAGGTGCCGTGCAGCTCGCCGTATGCCCA 780 29 93.1 32 .....................G......C GCCTGCAACACCTTGTCTTCGCTGTCACGCTG 841 29 100.0 32 ............................. AATTTGCCGCTCCGCCAGGTGTACGCGCAACA 902 29 96.6 32 .................A........... CTTGTCGGTCTGCCGCGCCAGCCGGAGGACAA 963 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.2 32 ATGTTCCCCGCGCACGCGGGGATGGTCCG # Left flank : CGCGGGGATGGTCCAATTCCTGATCCGCCACAGAGGCCAGAGAAGCCA # Right flank : GGCAGAGCCGCTCGACCAGTTCGTCGAGCAGTGGCGTGAGCCCGCCCGGCCCGAGGAAGTGACGAGCCCGGCGGGCGCCAGCGGGGCAAAGCCGGCCAGCGTGCCGTCGCCCAGCTGACCCGGGTCGAGCGCGACGTCGGCTGTGTCCAAGTTGGAAACGGTGAACGAACTGCCAAACGGCTCGGTCGGAGCTCGGGGGTTGCCTGGTCCGTACTCCGAGGCGCCACGGATCATGCGGTCGAAGTGCCGAGTTTCGGGCTATTCCTTGGACGCCATATTTTTCGGGAGTTGGCCCGACGGGTCCTATGCGACGGCTGGAAGTTGTGTCTGGCGTGCCCCAATTTTCGCCGTAGTGCTCCGGGAAGCCGACAATCTCGACATGACCTCTCGATATCGGATTTATGAGTGTGGTGGCGGTCTATCAGCCTGGGTCGCGGACCGGACAGCTTCCTTTGTGGACGCCGTTGTTGAGAGGAGGCGATTGTTGGCATGTGTGTTCA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9708-10874 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUG01000206.1 Allorhizocola rhizosphaerae strain CPCC 204380 contig206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================== ================== 9708 27 89.7 32 .....--.....................C CCCGATGAGGCAGCCGGTTTGGGCGCGCGTCC 9767 29 96.6 32 ............................C CAGAAGCCCATGATGCGTCGCCAGCCTCCGGC 9828 29 100.0 32 ............................. GACACGTGGAAAGCTGTGCTGCACTGCAGCCC 9889 29 96.6 33 ............................G AATTGGACCGAGGCCGAGCGGGTGACCTCCAGC 9951 29 100.0 32 ............................. GGCGTCACGTAGGTTTCTAATAACAGCAGGTT 10012 29 96.6 33 ............................C ATCGCGCGGCGTGCCGCGACGAGGATCCAGAAC 10074 29 96.6 33 ............................C GGGGCCGGTCGGCTGCGGGCCCGACCCCAGTCA 10136 29 100.0 32 ............................. CCGCGGCGGTTGAACACCTGGATTTGGCCCTT 10197 29 96.6 32 ............................G GCGGGCAGGTTGCCGGTGGATGCGGCGTTGCC 10258 29 93.1 31 .G..........................G TGGCGGTGCGTTGTCTTGCTGTTGACTCTTC 10318 29 100.0 32 ............................. TCAGCTCATCTCCCAGACCGCGCTGATCTGGA 10379 28 89.7 148 .G...-......................C GACCGCCGCGCGGTCGACGCCGCCGGCCCGGAATGTTCCCCGCGCGGGGATGGTCCGTGTTCGGGCCGGGCGCTGCGCATGATGATGGGCAGGTTCCCCGGCACGCGGGATGTCCGTTCTCCGAGTCGTAGCCGTCTTCGTGGTCGCC 10555 29 89.7 32 ..A..............A..........C ACGAGCCCGCCGCCGACCGGATTGGTGCAGTG 10616 29 96.6 32 ............................G ATCGGATAGGTGAACTCGCGCTGATCGATGTA 10677 29 93.1 18 ......G.....................C GCTCCGTGCGGGACAGCC Deletion [10724] 10724 29 93.1 32 .C..........................C ATCGAGTAACCCTCGGCCACGCGTGATGCCAG 10785 29 93.1 32 ..................A.........C GACATGTATGCGGCGTTGCTCCAGCCGTTGGA 10846 29 93.1 0 ......G.....................C | ========== ====== ====== ====== ============================= ==================================================================================================================================================== ================== 18 29 95.2 38 ATGTTCCCCGCGCACGCGGGGATGGTCCT # Left flank : ATCAACGGATGCGGGACAGTAACTTCACCCTGTACAACCTGACCAGCCTTACCCCAGAAAGCCCGCACGTCGAACTGCACCTGATTGGACACCACACCTACCATCGGGGCTGCTGACCCTGTCCTTTTCCGGCTGGCGCCAACCTCACGGTAAAGTCGGTCGGCGCGCACGACCGCCTAGCATGCATCAGTTCGATTGATCCACATACCTACTTGTCTAATAGATGACATAGTGTGCTTGATCCGTTTCGACCGACAAAGGGCCCACGGTGTCGAACAAGAAAGAGGAAATGTGTATAGCCGTGGATCAAAGAACAACAGTTGGGTGGCATTCCCACACTCCCGCTGGCCAGTACAGTTCACCAGCGGCGGACCAACTCAACCGCGAACGCTGCGGTGCCTGCATCGACCACGGCAAGAAGCTTGTCGTGCCGGTTGGCGGACAACGCGATAGTGAATAGAATCCGTCGAGTAGATCTCCAATGCCCCAGCTAAACAAGT # Right flank : CGTTGTCGCCGCTTTCTGAAAACGTAGTGGCATCAAGGATTCGGCGTGGTCAACACTGCGGCTCGGCAGCTGCTTGCTGGTGCGATGGGCCCCTACATCAACATCCGCGCGGCCAGGGTCCGGATGAGCTGAAGCGACCTGACGCGACGGAGCACCACAACCACCCGCAGGCGATAGCTTTATCGCATGGTGCTTGGGAGGATCATCCGACGTTGAGCGGGCTTCTCATTCGGCGCTCTGTAGCAGAAAGCTTCGGCCGTGCCCGGATCGGAACCCGCGCACCGATAATGATCAGCGCGAGCGAAGCGACGCGCGCGGATCAACGTCCACAACCGAACCCGCACCCGGACGGTTTCGCGATCGCGGCGCGGCGCGCCGCGGTCGGGTCTTGTTGCTGATCTGAAGTAACGGTCACCGGACCAATCAATGGCCACCGCGCTTCAATGGATAGTGCTGCCATTTCATCTGGGTGGCGGTGTGGGTGAGGTTGTTGAGTCAAT # Questionable array : NO Score: 4.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.68, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCACGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3594-4719 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUG01000374.1 Allorhizocola rhizosphaerae strain CPCC 204380 contig374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3594 29 96.6 32 ............................G GCTTGAGCCACCAGATCTCACCCAGCGGCGAC 3655 29 96.6 32 ............................A TCGGCGGCGTGCCGTTCCTGCCGGCGTGGGCA 3716 29 100.0 32 ............................. GCCCAACTGTCACCCCTTCCCCATCGCGCAGG 3777 29 100.0 32 ............................. GTGTCCATGGGCGGCAGCTCGGCCGGATCGGT 3838 29 96.6 32 ............................G AGTCCGCCGCGTTCACCGAATCCAGCCCCAAG 3899 29 96.6 31 ............................G GTTCCCTCGTAGTAACCTACGGCGATATGCA 3959 29 96.6 32 ............................A CGGCGGGTCAGGGCGCGTCTGCGCCACGCAAC 4020 29 100.0 32 ............................. CCGAAATGGGCGGACCGCGCGCCAAAACCGGC 4081 29 100.0 32 ............................. AACATCATCCCCACGTCGTAGCGGTATTGCTC 4142 29 100.0 32 ............................. CAGGCCAACGACCTGGAACGGCACCTGAAGAA 4203 29 96.6 32 ............................G GAGCGGTCGAGCACATCGAACACCTCGCCGCG 4264 29 96.6 32 ............................T GCCGGGCTGCTGCGAGGACTGCGACGACGCCA 4325 29 93.1 32 .................T..........G GCTTCCGGGTTGCCGCCGGAGGCCCAAAACTT 4386 29 100.0 32 ............................. AGGTTCCGGTACCACCAGGGTTGTAGACGAAA 4447 29 96.6 32 ............................G GGACAGAACGGTTTTCCCCCCACCGGGCGGGC 4508 29 93.1 32 .C..........................G GTCGGCCAATTGCTCAGCCAATTCGTCGTCGC 4569 29 96.6 32 ............................A ATTCCTGATCCGCCACAGAGGCCAGAGAAGCC 4630 29 100.0 32 ............................. TACCCGTGGCTCAAGTCCAACGAGTGGTATCC 4691 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.7 32 ATGTTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGTTGATGCCACGGCGGCGCAGAACCTGGTGCACTCTCGGGCTGCCGTAGGTGCCGCCGGAGCGTTCGTGGATGTCGACGATCTCCGACAACAGGCCGCGGTCGAGCTGTTCCCGTTCGCCTGGTTCCCGCTCCCGCTTGACCCATCCGTAGAAGGTGGACGGCTTCACGCCGAGGACCCGGAGGACGGGCTCGACCCCGAAGCGGCCACGAAGCTCGTTCATGCCGTAGTCGATCAATCCCGGGGCACATTCATGGGAGGAGGTATGTCCGAACAGCCGCCTTGAGGCTGCCCGTAACTGCTGGGTCATGTTCGGAGCCTCCCGCTGGCCGGTATGGTTCCAACAGTGGCTGACAGACTCAACCGTGAGCGCAATGGTGTCTCATCGGTGCCACGTCGACGGAGGCAAGAAGAAGTCGTCGTACCAGTTGGTGGTTGTGGTCAACGCGATAGTGAACGAAATCCGTCGAGTGGATCTTCACCGCCCGAGGTCAACAAGT # Right flank : CGGGCG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //