Array 1 453131-460000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQP010000002.1 Bifidobacterium sp. M0404 NODE_2_length_627765_cov_270.768737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 453131 32 100.0 34 ................................ AATTTGAACTTGACCGGATAACTGGCGGGTTGGG 453197 32 100.0 33 ................................ TCCGCATAGATCCTCCATCCGGACTCCCTGGTC 453262 32 100.0 34 ................................ AATTATGACCTGTGGGGTTTCCACAGAACTCTTT 453328 32 100.0 34 ................................ TCGGCCACAAACTGCCAGTATCCGGCGGTGTTTT 453394 32 100.0 34 ................................ CAGAAAATATCCTCACCGTAGGTACCAAATCCTT 453460 32 100.0 34 ................................ ACTGTAATAATCCTCTTTATCGAGGATGGTTAAT 453526 32 100.0 35 ................................ CTCGCGGGATTGTCAAAAACACATGTTGAGCGGTT 453593 32 100.0 35 ................................ TTCGATTCCGATTCAGCCATGGCCGCATTCATGAG 453660 32 100.0 34 ................................ CGAACCATGGCGTTTCAAAGCGCACAGGGGTACG 453726 32 100.0 34 ................................ CGATAGGTTCTCACCACTGGGGGTCGGCCTTGTC 453792 32 100.0 34 ................................ CTGCTCCGGTATCGAAGTGGCCGAGCAAAAGCGC 453858 32 100.0 34 ................................ CACTAGTCCGGCTGCTATCTGAGTCTGTGGCGCT 453924 32 100.0 35 ................................ CGTTGGATACGGCACCACTTATGCCATCCCATATA 453991 32 100.0 34 ................................ ATCGTGATGTCGTCGCGGTCGGTGACTTTTGCCC 454057 32 100.0 35 ................................ TAGCTCGGATCGGGCGTGCTCATTGAGGGTCTCTT 454124 32 100.0 34 ................................ GACGATTTTGCAAACTATCTCTGGGCGCACCCGA 454190 32 100.0 34 ................................ TGCCCGGGCTCGGCATAAAACCACTGCCGATTAG 454256 32 100.0 33 ................................ ATCGCCAGGAACGCCGCCCGCATCCCTATGAAG 454321 32 100.0 35 ................................ TGTCATCTCTCGCGGGTCGGGTACAGTGGTGCAAG 454388 32 100.0 33 ................................ CGCTCAGTAGTCGATGATTCTGCCGAGACCCAA 454453 32 100.0 34 ................................ AGCAGTTTAACGACGCCGTTGTCAATTTGGATAA 454519 32 100.0 35 ................................ ATCGCTCGCAGCTCACGCTGCGCGTACGCGAGATC 454586 32 100.0 36 ................................ ACGCCGGAGGAAGCGGAGTACGCCGTGCAGCATCTT 454654 32 100.0 34 ................................ TCCGTGGAGATCTGCATGTAGATCATGGGCTTGG 454720 32 100.0 34 ................................ CGCAACGTGTGCGACGGCTACAACACGCTGTTTT 454786 32 100.0 34 ................................ ATACGTGGGCAAGCAGGAGCGGGGCATCTTGATC 454852 32 100.0 35 ................................ GGTGGTCTGGCAAGAGGACGCGCCAAAATGCACTT 454919 32 100.0 34 ................................ ATCGGCAAAGGTATTAACATAGTCCTTGCCATCG 454985 32 100.0 36 ................................ AGCAAGATCAAAGATCATGCGACGGTGGGTTGGAAC 455053 32 100.0 34 ................................ CAAATGGCCGCCAAGGCGGTCAAACTCTACCAGA 455119 32 100.0 35 ................................ TGATACTCTCTGGCGCATAGTATGAGCGTCGGATA 455186 32 100.0 34 ................................ GACTGCCCGGAGGTCGAGATGGCCCCCGAATGGG 455252 32 100.0 35 ................................ CCCTTGACTCATTACATTTTAGGTGCATCAATCGG 455319 32 100.0 34 ................................ ACAGATTGGACTGATTGGCAGGTCTATGATTCTT 455385 32 100.0 36 ................................ CCTATGATCCATCCAAATTGACCATAGAAACATAAG 455453 32 100.0 33 ................................ TTTGCGATTCAGCCGTATAACACATGCAAAGTG 455518 32 100.0 35 ................................ TGGATGCCTTGCAGATAGTGGGCGAGCGCGCAATA 455585 32 100.0 35 ................................ ACATTGCCCACCACACCGACAACCATGCACTGCAC 455652 32 100.0 35 ................................ GATTGTCTGCCATACGCTGGTGATGACTGTGATGA 455719 32 100.0 35 ................................ ATCGCGTTATACAAATCCATCTGGTTGGCTTTGTC 455786 32 100.0 35 ................................ TTGATACTGCCCCAGACCCCTGAGAAGAAATCACC 455853 32 100.0 35 ................................ ATCCTTGAACAGCCTGACAAGTTCGTCCATCGAAT 455920 32 100.0 34 ................................ TTGCTGTATCTGCTGTGCTGGCTGACTCATGACG 455986 32 100.0 35 ................................ AATGGGTTGGAATGCTGGAAGGGCATGTGGCGGCA 456053 32 100.0 35 ................................ GTGTCGAACTTGACGATCCGCAGCCTGGGGGTCAT 456120 32 100.0 34 ................................ GATCAAGCACTCAAATACTTAAAGGATCATCGCG 456186 32 100.0 35 ................................ TTGCCAACGTGGCCGATTCCACGGCGTTCGTACGT 456253 32 100.0 34 ................................ AGTTCCATAGCACGTGACCCCGGTATTCAAGTGG 456319 32 100.0 34 ................................ TTGAGCGGGTTGAAGTCCGGCGGGGTGTTGAACA 456385 32 100.0 34 ................................ ACCGCCATCATCCAACTCCTTACTTGTGGGGCGA 456451 32 100.0 34 ................................ CGCGTGCTGGCCCCTGGCGGCGTGCTGATCTTCA 456517 32 100.0 34 ................................ CGGTTGTATACATGGTCGTCGGCGTGTGAAGCGT 456583 32 100.0 33 ................................ CAAGGGCCATAAGCCCTCCATGCCGTCCGGCTT 456648 32 100.0 33 ................................ AGCATGTCGTAAATCTCGATACCGAAATCAATC 456713 32 100.0 37 ................................ CGATGGATCCCATGGTATCAACTGGATCTTTAGGCAC 456782 32 100.0 34 ................................ CCGTTGAATCTGCTCCACGTTATCCAGCTGCCCG 456848 32 100.0 34 ................................ TATCACTAATCTGGGAATTGTCAAACGCCATTAG 456914 32 100.0 36 ................................ CTCCCGTCCCTCCGCATACACGCTCATGCGGAGGGT 456982 32 100.0 35 ................................ CGATACCATGGTGAACACCACGCCAAGCGTGGATG 457049 32 100.0 33 ................................ TTGGCCGTGGCCTTAGTGGTCTCGGTCCGTGGT 457114 32 100.0 35 ................................ TGCTGTCAACTCGCCGTCCGGATCATCGTTGGCAT 457181 32 100.0 34 ................................ CAGCATGATTGTGGCGGATTCGAGGTCGTCGCCG 457247 32 100.0 35 ................................ GTTTTGACCAACATTGGCAAAAAACCCGCCTTCGA 457314 32 100.0 34 ................................ CAGTGCAGGAGCCACCCGGCATGCCTGACCAGGC 457380 32 100.0 35 ................................ ATTGTTTGATCTTCAATGCGACTCTGAACACTGGC 457447 32 100.0 33 ................................ GTTCAGATGGATGGAATCAGTGTCCGAATACAT 457512 32 100.0 35 ................................ TGGTTTGAATTGTAGCCGACCGTGGCGTCCAACGT 457579 32 100.0 35 ................................ AAACGCGTCCTCCGCAGGACGGGCACGGAGCGCGT 457646 32 100.0 35 ................................ GTTGCCTGAGTCAATATCCGGCGATTTATATACTG 457713 32 96.9 35 .....................T.......... ATAAGCTGGTAGATGCTTTGAGGCATGGACATTAT 457780 32 96.9 34 .....................T.......... CGACGCGGGAAGCTATAGCAAATGAAAGAGCGGA 457846 32 96.9 34 .....................T.......... ACAGCCGGTCATGAAACACTGGCCCTTTGCTGTG 457912 32 96.9 34 .....................T.......... GCATAGGCTTTCCATGGATCGTCATAGCCGACAC 457978 32 96.9 34 .....................T.......... CGAACCGTCACGGTTGTATTTGATGGTCAGGGTC 458044 32 96.9 34 .....................T.......... TCAGAAAAGGCAGGCAGGAGAGCGGCACCTATTA 458110 32 96.9 34 .....................T.......... CTACAACCACAGGAACGGCAAATGGCGGCAAATG 458176 32 96.9 37 .....................T.......... ATCACCTCGTATATTCCCATCAGCGGGGATCCTGCCG 458245 32 96.9 34 .....................T.......... GGGTCCAGCGAGTACATCCCCTCGAGCTGGACCA 458311 32 96.9 35 .....................T.......... CATTATACAAGGCAGCCGTCACCGATAGTGTACGC 458378 32 96.9 34 .....................T.......... ATGGGGGTGAAATTGACGTCCAAAGTGGTCGGGT 458444 32 96.9 35 .....................T.......... GGCGCAGGGCCCAGTTTTGGGGGCGGCCCAAGCTT 458511 32 96.9 34 .....................T.......... CTGTGCCTGTGTGGCCGATGTCGCCATGAAAATC 458577 32 96.9 33 .....................T.......... CACATCAAGCCGGGTAAATTCCCTTTTATACAG 458642 32 96.9 34 .....................T.......... ATCCACAATCCGTACTTCTCATACTATGGCGTAA 458708 32 96.9 34 .....................T.......... TGGAATGTCATCCACGGGATCCTGGACAAGGTCT 458774 32 96.9 34 .....................T.......... GGCAACGTCGACAGCCTGGGCGAAGTGGTCATGC 458840 32 96.9 36 .....................T.......... CTTCGCGTAGTTTTGCTCCGAGAGCCCTTGCTTTTA 458908 32 96.9 34 .....................T.......... CCGTTTATCCAGTCAGGCAAGCACATATGGACGG 458974 32 96.9 35 .....................T.......... TAATAGGCGTTTTGGTCGTAAGTATTGGTTTTTGT 459041 32 93.8 35 .............A.......T.......... ATACAATCCGGTAAACACATCTGGACTGCTGAAAC 459108 32 93.8 34 ...........T.........T.......... CAGAACGACGGCACAAGACGATTCGTCATGTGGA 459174 32 96.9 35 .....................T.......... ATAGGACGTGTCAGGGTCGCCTCTACGCGTCGGAG 459241 32 96.9 33 .....................T.......... ACTTGGCAGAACTATGACCTTCGCGACGCTGAT 459306 32 96.9 34 .....................T.......... GGGGAAGACCGTAAATCTGCTCGAAAAGATGGTC 459372 32 96.9 35 .....................T.......... ACGCGAAACCCTTTAACCCCGGAAGATGTCATAAC 459439 32 96.9 34 .....................T.......... CGGCAAGGAGTTCATGCACGATCCAGCCACAGGG 459505 32 90.6 33 ...............T.....T.A........ TCGTTCGGGTCCAGCGTGTAGCTCCCCTGGAGC 459570 32 96.9 35 .....................T.......... ACCTGGTGTTGCGCCTGGTAGGCCCGATACATCTT 459637 32 93.8 34 .....................T.....A.... ATCAGATTCCATTTGGATCACCACCATATGCGTA 459703 32 96.9 34 .....................T.......... GCCAGCTTGCTGTCTACGATCATTGCCGCACCTG 459769 32 93.8 34 .............T.......T.......... GATTATGCTCAATCACAAGACGACGATATGGCAC 459835 32 96.9 34 .....................T.......... ATCAATGCAAAGGCAAAGATTTCACCATCTATGG 459901 32 87.5 34 .....GT............T.T.......... GCCCAGTCTTGCGCCCGCCAAGGCAATGAGAACG A [459916] 459968 32 75.0 0 .A..T..T....GT.....T.T......G... | G [459995] ========== ====== ====== ====== ================================ ===================================== ================== 104 32 98.5 34 GTCGCTCCCTTCACGGGAGCGCGGATTGAAAT # Left flank : TCCATTACTACGGGGTGAGGCGTCATATCCCTGTTGACCAAGTGATGATGCTATAGAGTTATGTGTCTTTGTTGTACTGTTTTGTTTTAGCCACGGAAATTAGACGATAGCTAAGTGGCTGGTGTAATTCTGTAAACGGTGCAGTATGTTGACTACTGTTGTGGATCATCGTTGGCGCGAAACGCTAGCAATCATGTATTCACCTGATCCTTCGCGCCGCAAATCTTTACTTCAGGACGATATACGGTCTTAATCTCGCATTTTTTTTTGAGCTGAGTTCTTTTCACATTTCAAATCAGAGGCTATTTATACGAAGGAAGCTAGAATTTTAGTGAATCGAATGAACAGTTGTTTGATAACTGAATAGTGATGTTATCAACTTGAAGTATCATCTCAATTGCTCGACTATGAACAGGAGCTGGGTACCTAGTTTGGGCTGTTGGGAGTCGTCAGCCATTAAAAGCTGATCATATATTGGTCATCGGATGTATCATTGTGCT # Right flank : TACCGCTACGAACGGCTCTCTGCTTGCGGCAAATGCATTGCCTCCTACGTGGATTACCTCCTATGTGGAAGCCTAAAAACGGAAAACTAATCGCTCTACTTTGAATTAACCAGACAGCACTGCCTCTTAGCTGGAATATGTATTAAATCAGTTCTTCCCTCAGAACTCTTTTATAAATTCTGCTCCTCAAAAACATAAGTATGAGTTGCTGCTTTGGTATAGTACCGATCATTTTCATGCCATTCTCTCATTCCTAGGCGCGGGTGTGCCGCCCGGTATAAGCTTGTATGCGGTGTGTCCACGAGTAGCGGACTTGGAGGTGTGGTCGCCGATGGAGCAATTCGACGATGCAGGTGGCGCGGAATCTGGCAGAAGCGCTTCAGCCGGTTCTGCATCTGTGCCATCGCACCTGGATGACGCGACTGCTGTGAACAAGGTTTCGGCCCACCCTGAAGCGACTATTCCGGATTCGGAATATTCTCTGGCTGAGATTGAGCAGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGCGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //