Array 1 39682-39915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJGF010000007.1 Campylobacter coli strain 2019/0231H/0191 NODE_7_length_94439_cov_16.064941, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39682 36 91.7 30 .GG...............T................. TGCCTTTAAAAGCTCGCAAGATGCTATGAA 39748 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 39814 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 39880 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : TTCAAAACCAGTGGGGCTAAATCAATTTAGGAAAAACACAAACAGAACAACTATATAAGAAGCGATAAGGAGACACTTATGAGGATCGAGCATTCACAAAATTTTTTACATAGCAAACGCCTTGTGTCGGAGTTGCTATCAAAAAGCAATATAACAAGCGAAGATACTGTAATTGAAATAGGCCCCGGTAAAGGAATAATTACGGAAGAATTATCAAAGAAATGTGGACAAGTTATAGGAATTGAATATGACAAAGAATTAGCACATTTGTTGCAAGAATCTTTCGCGAACAAATCAAACGTCAAGATTATCGAACAGGATTTTCTTAAATACAAATTGCCTAACAATGGAGTTTACAAGATTTGTGCGAATATTCCTTTCAATTTGACTGCGGACATCATGAAGAAGGTGTTGGAATTTGAAAATCCTCCAACTGATATTTACTTTATTATGCAATATGAAGCATTTTTGAAATACGCTGGAGAGCCGTATTATAACGA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 41155-41520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJGF010000007.1 Campylobacter coli strain 2019/0231H/0191 NODE_7_length_94439_cov_16.064941, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41155 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 41221 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 41287 36 100.0 30 .................................... TAATCATAATACACTCTTGTTTCAAAACTT 41353 36 100.0 30 .................................... AAAGCATCTCTTAAATCACTATCTTGCAAA 41419 36 100.0 30 .................................... TTATAGTCGTGAAACAAGGGTTGCAATAGG 41485 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACGCATTTGCAAACAAATCAAAATCTCAATGGACTCGTCTGTAACCGCTATTGCATATGAGGGATGGCTAAATTTATATGATGTGTTCTTGAAATTCGTTTCGAGCGACAAGAAAGAAATTATTAGAGGGTCGGAGAAACATTTAAAAAACAGTCAGAAGAACCTGCACAAAATACATCGAAATCGCAATAACGGTTATTCAAAGACAAAAAGTTATAAAAAAAATAGTGAAAAAAAATAATGAAAAACGGATATTATTTATTTGCCTATGTTGAGATAAACAAATATGCTAATTACTACCAAATTGATACTAAAAGGCACGATCAAAATATTTCATTATGGGAATATTTTGATGGAAATTTGACATTATTAAGATATTGGGAACTTGAAAGGCTATCAAGAATTAAACATCATAACAAAGCATTTTCGACAAAAGAACAATTCATAAAATTTGTTAATCAGCTTTTATCTCAATTTGATTTAGATGATTCTAAATTGGT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //