Array 1 22-904 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUZO01000093.1 Escherichia coli strain Ec56AC1 CTG_350_17911_cov_13.257105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 83 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 144 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 205 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 266 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 327 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 388 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 449 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 510 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 571 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 632 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 693 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 754 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 815 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 876 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAACTCATACGGCGACAAATG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65-520 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUZO01000238.1 Escherichia coli strain Ec56AC1 CTG_443_491_cov_10.645621, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 126 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 187 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 248 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 309 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 370 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 431 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 492 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : AGACGGCGCGTAAAACTCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 392-1276 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUZO01000014.1 Escherichia coli strain Ec56AC1 CTG_221_64884_cov_13.427116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 392 29 100.0 32 ............................. GAAAGGTTCCGGTTCGGCACACTGGAGAGCGC 453 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 514 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 575 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 636 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 697 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 758 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 819 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 880 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 941 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 1002 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 1065 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 1126 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 1187 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1248 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTGGGTACAGTAGCTGGATGCGACATGAACGCATTATGTGACCAACACATGCGCTCCCCGTAGGTCGGATAAGATGCGCCAGCATCGCATCCGACATTTTGGGCACAGTAGCTGGATGCGATATGAACGCATTATGTGACCAACACATGCCTCCCCGTAGGTCGGGTAAGACGCGCCAGCATCGCATCCGACATTTTGGGTACAGTAGGCGGATGCGACATGAACGCATTATGTGACCAACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //