Array 1 240942-244816 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJEH01000005.1 Legionella pneumophila strain 2531STDY5467437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 240942 28 100.0 32 ............................ AACATTACTAGACAGAATAAATATTTTGATAG 241002 28 100.0 32 ............................ TAAAAAATGGCTTTCAATGTGTAAATGTTATA 241062 28 100.0 32 ............................ TGTAAAAGCTTTATATTTGCCCTGTATTAAAC 241122 28 100.0 32 ............................ CTTATTTTTAGGCCGAAGTTTGTTATCTAGAA 241182 28 100.0 33 ............................ GGCATATACAGTAATGGGCTGGAAGGTTTATTG 241243 28 100.0 32 ............................ TAAATCATGTAAATCTGCTATGTGGTCATAAG 241303 28 100.0 32 ............................ TATCAATATTGCACTAGGGATACGTACGGATT 241363 28 100.0 32 ............................ TACAAATGTAACTGATGCTAAAAAGTTAGGTT 241423 28 100.0 32 ............................ ATCGTATTGTGTCTCCCAATAAGTAACTTTTT 241483 28 100.0 34 ............................ TGACATATAGATTTCGCAGCATCAGCATAACTTT 241545 28 100.0 32 ............................ TAACACTTTAACCATTCTTTCCCACGCATCTG 241605 28 100.0 32 ............................ ACTTCCTGCTTAGGTCGAGCAAAAAAGTTTTG 241665 28 100.0 32 ............................ CCACAGGTATTGTTTCAATTGTATCGGACACG 241725 28 100.0 32 ............................ TTGCGAATAAGATGCATCATAAAACTTGCCTG 241785 28 100.0 32 ............................ AAATCCTCACTTTTCAATTTCTTATTTAATAA 241845 28 100.0 32 ............................ TGAAACTCACCATTTTTTAATAAAGGTTGGTT 241905 28 100.0 32 ............................ TAAAAAGCATGTTTTGTTAAAATGAGGAGATA 241965 28 100.0 32 ............................ ATTTGCATAACCAGTATCCGCAGGACTAGTCA 242025 28 100.0 33 ............................ CGATTGGGTAAAAGAAGTACCAGAAGGCTATCA 242086 28 100.0 32 ............................ TTGCAGCCAAATCAAATTTATTATCGTGAGCC 242146 28 100.0 32 ............................ GCATGGGCACCGAAAGGAACAGCAGACATTAC 242206 28 100.0 32 ............................ TATAAGAATTACTGCTTTAGCCCAGCTTATTG 242266 28 100.0 32 ............................ TAAAAGATTTTTATGTGGTAACTGTCATTAAA 242326 28 100.0 32 ............................ GATAATGGGTTTGCTCGAAAAGAAGATAATGC 242386 28 100.0 32 ............................ GGAAAATTGTTCCAGCCTCTTCGTTTCTAAAA 242446 28 100.0 32 ............................ GTTACCGCAGCACCTAAATTGAATTCTTGTTT 242506 28 100.0 32 ............................ TACGCAGGTTGCTTCTTTGGTTCATAATAGTC 242566 28 100.0 32 ............................ TAAAGTAGCTGCCAGCATAGGATTAATACCCG 242626 28 100.0 32 ............................ TGATGATTCTACGGATTATTTAGTTCCCACGA 242686 28 100.0 32 ............................ TATTACTGAGGCGGGGAAAAGATAATGGCAAA 242746 28 100.0 32 ............................ TATCGCGTTTATTATGTGCACTTTTTCAAACT 242806 28 100.0 32 ............................ TAACGTAGACACACTAATAAAAGCAGGTAAAA 242866 28 100.0 32 ............................ AGATCCGGGCGGAGAAAAAGGAGCTACTAAAC 242926 28 100.0 32 ............................ AATTCTCAGAAATAAATAAATGTTTATTTATA 242986 28 100.0 33 ............................ GGTAGACACTGGCCTTTTTAAATCCAATTGGGT 243047 28 100.0 32 ............................ ATTAAAAGCCTTGCTGCTGCATGTAGTCTATG 243107 28 100.0 32 ............................ AAGAAACCGGGGAAGTGAACGACGCATATCGC 243167 28 100.0 32 ............................ TGCTGAATTGCGCGTGAAATTCTTTCTGATAA 243227 28 100.0 32 ............................ AATCCTCAGCCCAATGATTTTCAGCATCAATT 243287 28 100.0 32 ............................ AATCACAAGTTTACGCCCACCTAAAGTTTTTA 243347 28 100.0 32 ............................ TATGACCTCCAATCTTCTTTCATGGTCATTAT 243407 28 100.0 32 ............................ TTATGATACGCAGGGCAATATATTGCGTAGAG 243467 28 100.0 32 ............................ TTGGGAAAATTCCCATATTGCTTTTGCACCAT 243527 28 100.0 32 ............................ AGCGTGACAAATTAATCAATAAGTACAATAAT 243587 28 100.0 32 ............................ TTGAAGAGTACATTGGATATTCAATTAGTGCT 243647 28 100.0 32 ............................ ATTGATTCATTAAGAGCTAATTTAGAGCAACC 243707 28 100.0 32 ............................ TCCTCCTAAGCCTGGCGCGCCTAACAATTCTA 243767 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 243827 28 100.0 32 ............................ TCATAAGGCTCTACCTCATCAAGTTCGATATT 243887 28 100.0 32 ............................ AATATGGATAAGGCTTAAATGGTCTGGTGCCC 243947 28 100.0 32 ............................ TTAGGGGATTGTATCGCCCCTGGCGACGGATA 244007 28 100.0 32 ............................ ATCATACTTCTTTTATCAACTTTTTGTGTTGC 244067 28 100.0 33 ............................ ATTATGGATGCTGTTGCAAAAGGCGAGCTCACG 244128 28 100.0 32 ............................ GCCTAAAAGCCGAGGCGGACGTGAATTTTTAT 244188 28 100.0 32 ............................ AATTAATGTTAATCCTGTACCTCAGACTAGTT 244248 28 100.0 32 ............................ AATTATCCCAAACAAGACGATACGGAACAGCA 244308 28 100.0 32 ............................ GCTTGCGCCATGCGCTTAACTATTGCCCTCTC 244368 28 100.0 32 ............................ ATACGCACAGCTTAATGAGTGTTATTGGCGCG 244428 28 100.0 32 ............................ TACAATCTTGTTTAATGATGAATTAGTCAATG 244488 28 100.0 32 ............................ TCTATCGTTGGCCTATGTCTTCCGTTAATCAT 244548 28 100.0 33 ............................ TTACAACATCGGCCGCCGCGACGGGAACAGTTC 244609 28 100.0 32 ............................ TATGAAAACGAACGACGTGAAACAGCGTAGGA 244669 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 244729 28 100.0 32 ............................ AATAGAGACAGCCAAAAAGAACTGAAATTTGA 244789 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 65 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTACGGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : AATACGGCGAAATAGACGAAAGTGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCCCCCTACTATAGTTTTCTTCAGGAGAATGAATTCTGGAGGAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 117-1767 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJEH01000004.1 Legionella pneumophila strain 2531STDY5467437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 117 28 100.0 32 ............................ GTCTTCGTGTGTAACCTCGTCTTTTTCGTCCT 177 28 100.0 32 ............................ CTATGAAGACGGTCTGCACGGAGAACTCGTTA 237 28 100.0 32 ............................ TGTAGCGGAATCAACGCCGTACGCCTCTGGTA 297 28 100.0 32 ............................ GATCAATCAGATAATCCACAAGACTACATTCG 357 28 100.0 32 ............................ TACGCCTCCGCTTGACGACTTTAAGCCCAAGG 417 28 96.4 32 ....................T....... TTATGTGCAAAAGGGCGGTAAGGCATGGCAAT 477 28 100.0 32 ............................ GCAACAAAAATGGCGCTAGAGGGCAACGAAAA 537 28 100.0 32 ............................ TATCGTCAACAGAGTCAAAGTATCGCCAGCAG 597 28 100.0 32 ............................ ACTTACCCCTCCAAGGGAGGTGGTGCGGACTC 657 28 100.0 32 ............................ AGCGCGTAAAAATCCTATCGAGAGGTCAAAAG 717 28 100.0 32 ............................ GATAACTGGCAAGACACCGCTTTTGCGTGGCG 777 28 100.0 32 ............................ TTACTCCCAGCTCAATGAGTGCTACTGGAGGG 837 28 100.0 32 ............................ GCTCTTCGATCGTCGGCCTATGTCTTCCGTTG 897 28 100.0 32 ............................ TTTGCAGCTCGGACATCTAATCATTTCCGTCG 957 28 100.0 32 ............................ TGTGCTAAAAGTTCCGTTTGCTGTTGCTTTGC 1017 28 100.0 32 ............................ GGCGACATAAAGCGAGACAAAGATGGCAACGA 1077 28 100.0 32 ............................ TACCAAGGTATTGCTGAAGCAATGGCCACTCA 1137 28 100.0 32 ............................ TTTTTCTCCGGCGGAATCTGGATCAAGCCATA 1197 28 100.0 32 ............................ TCACGGTCTATTGTGTCGCCCTCAATTTGTCA 1257 28 100.0 32 ............................ TATGTTCAGAACCAACTCACGAATATCTCTCT 1317 28 100.0 32 ............................ AACGGCTTGAAATAATCCTTGGGCATGCTCGG 1377 28 100.0 32 ............................ TCTTCTTGCTCTTCAACAGCTTGCTTAGTCTC 1437 28 100.0 33 ............................ ACTGATTTAACAGCACAGATGGAAGCATTGAAA 1498 28 100.0 32 ............................ TCTCTGTAGTTTTGTTCAAAAACAGGGTATGT 1558 28 100.0 32 ............................ AATACATCACCAATTTGAATATCTCTAATCGT 1618 28 100.0 34 ............................ ATTTAGACGAATTTGTCGCGGCCGATTTAAGTAT 1680 28 100.0 32 ............................ AAGTAAATCCAGACCAGATATACATTCTTATC 1740 28 67.9 0 .............T......TGGGTTGG | ========== ====== ====== ====== ============================ ================================== ================== 28 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCAGAAGGAGGAGCAAAATAATATAACTGATTAATTTTTTTACCAGGAGGGATCAATTTTCATCTGGCAAAAGGATCAATTTTCAATCGGCATTGACACGAAAGTATAGACTTGAG # Right flank : GTATTGGTTAAGTCGTATAAGAGGAGTTAAATCGGTATAATTATCCGAAGAACTGGGATGGAAACTCATTAAAGAACTAATCCCTGATATTAAATCTAAAACGGCACATTATGAGCATGCGCTATTAACCAAAGGGCATGCAAGACCCTGTAGGGTAGTTACAACTTATCGTCAGCCCAAAGGGAGAAAAGTAAAGACATCACGAGGAAAAATACCTCAACATTATCCAATGGAAGTTATAGTCAAGCGAATAAGGAGCCTTGGATTTTAGCTACTAATTTACCCTTGGATGTAGGGCCTGTTGATATTATCAATCTCTATTTTAAAAAAATGCAAATAGAAGAATCATTTAGAGACGTTAAAAGTCATCAATTCGGACTGGCGGGGCGGTATCTGCGTACTCATTCAGTTAATAGATGGGGCGTTAAAATGCTTCTTGCTGCTATTGTGGAAATTACTTATTGGGTTATTGGAGTGATTGCCCATAGTCAAAATAAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //