Array 1 1222690-1220414 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594042.1 Streptococcus equinus strain NCTC8133 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1222689 36 100.0 30 .................................... CAGTTGCTAAACATGTGTTGTTTAGACACA 1222623 36 100.0 31 .................................... CTAATAAACAAAACGGACTTTTAAAAACATA 1222556 36 100.0 30 .................................... CTTGTTCTTTATCCATATTAATTCCTTTCT 1222490 36 100.0 30 .................................... ACTTGTCATGCTCAAATTTGGCTTTTTCTT 1222424 36 100.0 30 .................................... GCTACCTGAGATAATTTGAAGAAGCCATTT 1222358 36 100.0 30 .................................... TGCACCTTCAACAGTGGCTGCTTCGAGACC 1222292 36 100.0 30 .................................... TTTTGTGTCAAAACGAAAAATTCACTTCGA 1222226 36 100.0 30 .................................... CATGTTTTCGATTTCCGCGCGTTGTTCTAG 1222160 36 100.0 30 .................................... AAGACGCTATTAATAGTATTTTAAAAGACA 1222094 36 100.0 30 .................................... TTCATCGACTCGTTTTCGCACTTCTTCAAT 1222028 36 100.0 30 .................................... TGAAGCTAGCGAAAAGGTTAGCGAAATAGG 1221962 36 100.0 30 .................................... ATGTCAGGCACGTCGGCACTATTCGTTAAC 1221896 36 100.0 29 .................................... GAAGCTGAATATACGTTCAAAACGTTAGA 1221831 36 100.0 30 .................................... TTGGATAAAAACAATTTAAAGGCGGTATTG 1221765 36 100.0 30 .................................... TTGCTGAAATGCTGCATGTTGAGCCAAACG 1221699 36 100.0 30 .................................... ATTTTTCCATTCGGGTGTTTTATCCTGATA 1221633 36 100.0 30 .................................... TAAAGTCAGTGTTATATTTGGGAGCGTAGG 1221567 36 100.0 30 .................................... ACAGTTTTTCCAAAAGTGGGATATAGTTTG 1221501 36 100.0 30 .................................... TCAACATTATCACCTTCGTAGATGACTTCG 1221435 36 100.0 29 .................................... TGCCCACAAACTTTCATCGCTTAAAAGTC 1221370 36 100.0 30 .................................... TGTTTTAGCGGCATTAGGATTCTCACCTAC 1221304 36 100.0 30 .................................... CTGACTTTCTTGCCACTATCTCGAAGCATT 1221238 36 100.0 30 .................................... CAAACTCAGCTAATTCTTCAATCCACCCAA 1221172 36 100.0 30 .................................... AATCGCCTAATTCCCACTCCATGTTCTCTT 1221106 36 100.0 30 .................................... AATTTTTCTATCAGCACAAAATCTATATCT 1221040 36 100.0 30 .................................... GCCAAGAAACGCTGTAAGTTAGCGCTTTGG 1220974 36 100.0 30 .................................... TGTTATCTAGTCCTAAATGGTCTACTGACA 1220908 36 100.0 30 .................................... TGCCCATAGTTTAATCAGCAAAGTCGCTCT 1220842 36 100.0 30 .................................... GGCATTCATCCAAGTTTCATTTGACATAAG 1220776 36 100.0 30 .................................... AACTAAAACCAGTTTTACCGTCTGCCGAAC 1220710 36 100.0 29 .................................... AACCCGTCAATGGGATTCCATTTGAATGA 1220645 36 100.0 30 .................................... ATATCAACCTCACAAACAAAGAATGCCAAA 1220579 36 100.0 30 .................................... TTTGCTGTCAATGTCTGATTGGACGTCTTC 1220513 36 100.0 30 .................................... CTGTTGGTGCATCTGATGGCTGTTGGGATG 1220447 34 80.6 0 ....C.................CAAC...--..... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGACTATCTTGATTATTCTTCATTTATAAGAATTTGTGAATCTATTACTCAGATAACAAGTGAGTTTCCAAATTTTTACTGTACCATTTTTCCTTCGAATGAAAGTTATTTGTATGTTACAAAAGAAACAATAGAGTCTGTTACAATTGTTTCGGAGTATATTGAATCCTTATATGATCTTGATTTTATGTATGAAAGATTTGTTGGAAGATATCCATCAAATAATATACCAACGAAAAAAGAATTTTTAATTCTGCTACAAAAAAATGCAAGTTATCTATTTAGCAATCAAATCACGTATGTGAGTTTAGGAATTTCAGATATGGTTGCTATTAAAATACTTAATAGCTTATATCAGTATGATAAGAAGTTGAGTTATCCCATTCCTTTGGTCGACCCGCTTGAAATCAGCTTTTTAAAGGACAAAGATTGACTTTTTTGTTTAATCAAATTATAATTCTTGTAGGGTACAAGAGCTAAAAATGACGATTTGAG # Right flank : CCCACCTAGTTCGTCACTGGGTGGGGTTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTATCTTTGCTTAAATAATAGCGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGTGATATTTATCGCGCTTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGTGAAACTTACATCTTCCACTTGATTGACACACCAGGGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //