Array 1 994522-996471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031324.1 Neisseria meningitidis strain M23347 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 994522 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 994588 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 994654 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 994720 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 994786 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 994852 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 994918 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 994984 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 995050 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 995116 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 995182 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 995248 36 100.0 30 .................................... ATGTACATGATTTGGCAGGATGGGCATTGG 995314 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 995380 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 995446 36 100.0 30 .................................... GTAAGTGCTTTATTCATTATGGTTTCCTAG 995512 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 995578 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 995644 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 995710 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 995776 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 995842 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 995908 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 995974 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 996040 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 996106 36 100.0 30 .................................... AACACGCGCAATCCCCCTTGCACGGTATTC 996172 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 996238 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 996304 36 100.0 30 .................................... CGATTTGGTCGGCGTGGTGATTACCGTCCC 996370 36 100.0 30 .................................... TTCAAGTCGGCAAAATGCCCGTCAAACTCG 996436 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //