Array 1 99370-98537 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYC01000045.1 Bifidobacterium pseudocatenulatum strain CA-K29a, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 99369 33 100.0 34 ................................. GTTAATGCTGGTCGAGTCCATCTCCTGCCGAATG 99302 33 100.0 33 ................................. CACATGACGTCAATCATGGTGCACCTGAGCTGA 99236 33 100.0 32 ................................. AGCGTGATGACGCCGGCGACCATGTTGCCGTG 99171 33 100.0 32 ................................. ATTTCATAAAACCATACGGCGGCTTCCGGCCT 99106 33 100.0 34 ................................. AACGATTTGCGTAATACGCCACTGGAATCGTACA 99039 33 100.0 33 ................................. AGAAACGGCAAACAGTTCACGTTCGGGGTGGAA 98973 33 100.0 36 ................................. CTTTCTGCTCGTTTGAACGGCCGACGAGGTAATCAA 98904 33 100.0 34 ................................. TCGAACACATCGTAGCGTCCGCGTGACATGTAGG 98837 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 98769 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 98702 33 100.0 33 ................................. AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 98636 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 98569 33 93.9 0 .............C.........A......... | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 99.5 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCAGCGTTCCGGCCACCGCGTGGATGTCGCTCTCTCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGGATGATTCCGCATGTGCGGGACTGTTGGTAACGGAAAACCTGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGAGCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19936-19331 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYC01000019.1 Bifidobacterium pseudocatenulatum strain CA-K29a, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 19935 35 100.0 29 ................................... CGGCGAAGAAGAAAATCCGCGACGCGGGA 19871 35 100.0 29 ................................... CGAAGAAGCGTGCAACGGCAAGAAGCCGA 19807 35 100.0 30 ................................... CCGTCACGGCAGCGATTGCGAGAAGAATCT 19742 35 100.0 30 ................................... CTGAAATCCGTGGGAGCGTCCTCAATCGGG 19677 35 94.3 28 ..............TA................... TTGAGTATCACGGCGGCTGAAAACTAAA 19614 35 88.6 25 ..............GC.G.........A....... TCTGTCTCGGCCTTCTGCTCTGCCT 19554 35 88.6 29 ....G.........TA.........A......... CACGTTTCCCGCTTAGTCATTTGGTGTCT 19490 35 85.7 26 ....G.....G...TA..................A TCTAGCGTCGTTCTGCATACTGAAGG 19429 35 88.6 30 ..A....A......TA................... CATTTCGCCATCGTACAATCGGTAAACTCG 19364 34 82.9 0 .T..G.......-.G............A......A | ========== ====== ====== ====== =================================== ============================== ================== 10 35 92.9 29 AGTAAAAGGAAGTAATAATACGGCAGTCTTCCAAT # Left flank : ATCCAAAAGGACTGACCATCCCCTCATTGGCGGACGAATTCTGCGGACAATACGCGCAATACTGCGAAGGCTGGCTAGACAAACTAACCGTCCCAATTTTCGGGAAAAAGGGATAAGAAATGAAAAGAGATAAGGATAACGGCATGTGGACGCTGGTCATGTACGACCTACCCATTACAACGAGAGAGGACGCTGGAGCCGCGAACAGATTCACCAACTTGTTGGCTGATTTAGGATTCGTTCGAGTGCAATACTCGGTCTACGCGAGATACACTCCCACCCAATCAGGTGGCAGGTCTGCCCTTAACTACATCAAGGCGGGCATACCCCCTCACGGAAACGTGAGAGTGCTTTGCGTAACGGACATCCAATGGGCTAATTCTTTAAAATTTATCGACAAAAAACAGCAGAAGACGGACGAGCAACCGGGTCTGTTGACTCTTTTCGACGACGACGAATAGCAAAAAAACGTTGATATGAAGCGGTTTTCAGCTTCCTAT # Right flank : AAAAGAATAAGCCGGTGTTTCGCCACTCCCACCGGCGAGGAGCTGTTCACACAAAGACGCGGAGTAGGAGAAGGGTGGAGAGAAAAACACCCGTAGACTCCGCTTTTTGTTTGGCGTTTGACATGGCTTGGTTGTTTCCCATCAGTGAGTTCATGTCGTGAACACTGGAATGGTATGCGTGTGTAAGGGGTGCAAGGCATACCGGCTTGCTGACAGTCCTTCATGGATTTCCGGACTATCATCCATCGCGCATGTAAGGGGTCATGCCATGGATTGTCCTATCAGATGAGGGTTTGAGGATAGGACTTTGTGCGGAAGACGAGATTCGAACTCGCAATGACTGCTTGGAAGGCAGTCGTGATAGCCCTTTCACTACTTCCGCGAGGGGATGGGATTGACTGTGATTGCTTACTGGTAACACTGCATACACGGAGAAAAATGTTTACGACCATTCCAAACTATTATGGGATGGAAGGCTCGCAATCATAGTCTATCCCCAG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAAAGGAAGTAATAATACGGCAGTCTTCCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //