Array 1 234863-234632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032609.1 Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 234862 32 100.0 34 ................................ ATAAGGGAGATTCCAAACATCCCCTCGATGATAT 234796 32 100.0 35 ................................ TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 234729 32 93.8 34 ...................T...A........ ATTAGACGAGATATATCCACAGAAGAAGAATTAC 234663 32 87.5 0 .......T............C.AA........ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 95.3 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGTGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGGTGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGCGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : GAAATTACTTGCTGCCTTATCTAGATTACTTTCTTCGCATCTCAGGTGTGTGGAGTAAGACTGATAAAATAATTGATAGTAATTTAGTGCCTCTGTTGGAGAAAGGGGACCTGTTTCAATTCATAAAGCAACGAGTGTTGATCCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCATGGGAAGGATAAAGTTTTAGATACGATGGGGATGAAGCATCGTGTTGATTTCGCAGTCTATGTTTGTTGGTGGGATCATCATTCAAAACCTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACAAAAAACAATCAATGATTATACTGTCTTGGTACATGAATTAGATGGTTTAAAAGTTGAGATTATTAAAGGAATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAAGATATACCCTATCAATTTATTAAAGGAAAGTCGCATCT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 243977-243223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032609.1 Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 243976 32 100.0 33 ................................ TCCGCATGTATGCATCACTACTTTATCGCCTAT 243911 32 100.0 33 ................................ TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 243846 32 93.8 34 ....T..............T............ GCTGGGCGTCACTTATGAATGGTCTAACATCTAA 243780 32 96.9 34 ...........A.................... ATGTTGCTAACCCAACATCGGTTACCTGCTTTAC 243714 32 93.8 34 ..T......A...................... GACCAGTTATCACACATGATCTCTGCCGTCATGA 243648 32 93.8 35 .........C.........T............ GGACAAGTTTATCAAACTATTAAATGAGGTGAGAG 243581 32 93.8 34 ...........A...........A........ AGTTTAGATATTATCGATGTCGTTGCAGATAAAT 243515 32 90.6 33 ...A.....C.........T............ ATGCCAATCGGTGTACAAGCCGACTTCACTAAC 243450 32 100.0 34 ................................ GAAAAAACGCTTGATGACTTAATGCGTGATGAAG 243384 31 90.6 35 ..........G-........C........... TACCTCGAGTTTATATTTATCTGCAACGCTCTATA 243318 32 90.6 33 ...........A..............G...G. CTAAGAAAACCATGAGTGTATTAATTGCTGTAG 243253 31 81.2 0 ......AA.C.A.-......C........... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 93.8 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AAGAATGTGGAGAAGGATATGTATGTATTAATGACGATATAGGAGAACAGGGTATGTGCTTAAATTGTGGAGCGAAGCATGAAGTTTCTACGTGCGAAAGATGTAAAGTAACATATAACCAAAATATTGATGGTGAAGAATATCTTTGTGAAAATTGCATGGAGCATTATTTAGGGGAATAGGGAATTTGATGTTAAGTTCAAAAAAATGCTCTACAAATTAATATATGTATATAATTTACAAAAAGTGTTGTATTCTATAAAAATACCAATATTTCATAATTATGAATCGAATAGTAATAGATTAACCAAAAGTTATTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATGCTTTATAATGGGGATTTATGATTTTTATACAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAAAGTGTTTTTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTAATGCTCTGGCTTAAAAACGCTCTGCAGTTTAGTAGATACTCAACTGGAAGTATCTCCATCTGCAGTATCTAACAAACATGTAAAAAATATTAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //