Array 1 121696-122821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026976.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FDAARGOS_54 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121696 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 121757 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 121818 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 121879 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 121940 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 122001 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 122062 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 122123 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 122184 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 122245 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 122306 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 122367 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 122428 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 122489 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 122550 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 122611 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 122672 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 122733 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 122794 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139080-140743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026976.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FDAARGOS_54 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 139080 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 139141 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 139202 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 139263 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 139330 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 139391 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 139452 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 139513 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 139574 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 139635 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 139696 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 139757 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 139818 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 139879 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 139940 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 140001 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 140062 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 140123 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 140184 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 140287 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 140348 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 140409 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 140470 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 140531 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 140592 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 140653 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 140714 29 96.6 0 A............................ | A [140740] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //