Array 1 494050-495039 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBQJ01000001.1 Chromohalobacter canadensis strain USBA 855, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 494050 28 100.0 32 ............................ AGCAAAGGCCAGACGTTGACAACTTTGGGAAG 494110 28 100.0 32 ............................ GTTGGCATGTGGTCAATCGGGGGTTGCCGTTG 494170 28 100.0 32 ............................ CGATGAACTGGAAGACGCCATGTCAAATGGGC 494230 28 100.0 32 ............................ AGCTCCTCTCGGCTGTAGTGAATGCCGTTCAG 494290 28 100.0 32 ............................ TTATCGTCAGACACATTAATTGATGTAATCGT 494350 28 100.0 33 ............................ CGAAGAATACGCACTTCCTAAGGGGGATGAGTA 494411 28 100.0 32 ............................ ATCTCGGGGCCAGCGGCAGGGGCCTCGTCTAG 494471 28 100.0 32 ............................ CATTCAAGATCAGCTTGAGGCGAACTCCAAGG 494531 28 100.0 33 ............................ TGCTGGCCCGCGCGCAAAGGACGCCAGCGACGA 494592 28 100.0 32 ............................ GTTGATCGCAGCGTCCTCCGCTGCGCGCGCCA 494652 28 100.0 32 ............................ CAGTTCCCCACTAGCGAGCTGGCACCGTTTTC 494712 28 100.0 32 ............................ GGCAGATATGTCCGTGGGCGTAGGGCGCTCAC 494772 28 100.0 32 ............................ CGTAGACGATGAGGATGGCGAAGAACACGAGC 494832 28 100.0 32 ............................ CAGGCCGTCATCACCGGTATGCTGTATAGCAA 494892 28 100.0 32 ............................ AGCATCAGCCGCGCGGCACGGTCATTGAATGC 494952 28 100.0 32 ............................ AGCGTGGAGGAAGGGATGCCGGTGCTGCGCCA 495012 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 33 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTAGCTGCCGCCCAGGCAGCTCAGAAATGGGCCGCAACACCTCCGCGTGATCGGCAATC # Right flank : ATCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTTAGCTGCCGCCCAGGCAGCTCAGAAACGCGAAACCAGCAGGCGGATGCGCCGCCATACGTTAGCTGCCGCCCAGGCAGCTCAGAAAACGAACAGCGACAAGCGCCACTCGCGGGCCTTGTTAGCTGCCGCCCAGGCAGCTCAGAAATGCCCAGCGAGTGCGCGCCGACCGAACAGAGCGTTAGCTGCCGCCCAGGCAGCTCAGAAAATCCAGCTGCAGCCGCGTACCCTCGACGATCACGTTAGCTGCCGCCCAGGCAGCTCAGAAAATGGACATTGCTGCCAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 495308-496116 **** Predicted by CRISPRDetect 2.4 *** >NZ_OBQJ01000001.1 Chromohalobacter canadensis strain USBA 855, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 495308 28 92.9 32 ..TA........................ ACGAACAGCGACAAGCGCCACTCGCGGGCCTT 495368 28 92.9 32 ..TA........................ TGCCCAGCGAGTGCGCGCCGACCGAACAGAGC 495428 28 92.9 33 ..TA........................ ATCCAGCTGCAGCCGCGTACCCTCGACGATCAC 495489 28 92.9 32 ..TA........................ ATGGACATTGCTGCCAAGCGCAAGACGATCGA 495549 28 92.9 32 ..TA........................ CGCAATCCGTACAGACGACGATACAGCTTTGT 495609 28 96.4 32 ..T......................... CGCAATCCGTACAGACGACGATACAGCTTTGT 495669 28 96.4 32 ..T......................... GCGACGAGGCGCAGGCATCGGCGCAGTCAGCC 495729 28 96.4 32 ..T......................... AAAGCCGCAACCACCCCGACGCCACGACCACG 495789 28 100.0 32 ............................ AAAGCCGCAACCACCCCGACGCCACGACCACG 495849 28 100.0 32 ............................ TGTGACCGCGAGCTGATGCTGGATTTGTATGT 495909 28 100.0 32 ............................ TGAAACTTTCATGGGCATCCTGATTGAGAGGG 495969 28 100.0 32 ............................ ACGCTCAACATGCCGCTGGGCCGTACCTACGA 496029 28 100.0 32 ............................ GGGGGCTCGTAGAAGTCGCTGTTGATCCACAA 496089 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.7 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : ATGAGGATGGCGAAGAACACGAGCGTTAGCTGCCGCCCAGGCAGCTCAGAAACAGGCCGTCATCACCGGTATGCTGTATAGCAAGTTAGCTGCCGCCCAGGCAGCTCAGAAAAGCATCAGCCGCGCGGCACGGTCATTGAATGCGTTAGCTGCCGCCCAGGCAGCTCAGAAAAGCGTGGAGGAAGGGATGCCGGTGCTGCGCCAGTTAGCTGCCGCCCAGGCAGCTCAGAAATCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTTAGCTGCCGCCCAGGCAGCTCAGAAACGCGAAACCAGCAGGCGGATGCGCCGCCATAC # Right flank : ACAGCTCGCCAGCCAGTAACATGCCGCCTACGTGTTAGCGCTACCCCGCGATCTTGAGTCTTATATCGACCCGAGCGGTCGCGTGTTCGAAGTGTTGAACTGCAGGCGCAAGCTCAGCCTGCGCCTGATTTCGGTGGCTTCACGATGGGTTCAAGATGCCTTACGAGAGCCTGATGAACGAGACGGCCGCCGGAAGTATCACTCTGCTTCTGCCAGCACTTCCTTCAATCGATCGGGGAAGTTGGTGAAAAGGCCGTCGACGCCCCAGCCGAGCAGTCGGCGCATCCGGTCTTTGTCGTTGATGGTGTAGACGTGCACCAGCAGGTCGTTGGCGTGGGCCTGTTCGATGAAGCGGGCGTCGATGACCGGTTCCCCTTCGTACAGGTAGTTGGGGCCGACGCCGTCGGCGTAGTCGGCGATTGCCTGGAAGTCGGCATCGGTGATGTTGGCGGGGCTGGGGGTGACGCCGGTCCATTCTTCGAGGGTTTTGCCGTCTTCGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //