Array 1 186573-184895 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKC01000004.1 Salmonella enterica strain BCW_2001 NODE_4_length_349931_cov_1.7706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186572 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 186511 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 186449 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 186388 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 186327 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 186266 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 186205 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 186144 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 186083 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 186022 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 185961 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 185900 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 185839 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 185778 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 185717 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 185656 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 185595 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 185534 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 185473 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 185412 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 185351 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 185290 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 185229 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 185168 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 185107 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 185046 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 184985 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 184924 29 93.1 0 A...........T................ | A [184897] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203851-203213 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKC01000004.1 Salmonella enterica strain BCW_2001 NODE_4_length_349931_cov_1.7706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203850 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 203789 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 203728 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 203667 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 203606 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 203545 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 203484 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 203423 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 203362 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 203301 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203240 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //