Array 1 363525-362566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYR010000001.1 Listeria seeligeri strain FSL L7-0191 NODE_1_length_453130_cov_59.807713, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 363524 36 100.0 30 .................................... TCGGACACAACACAAAAAGCGAATGCCGTA 363458 36 100.0 30 .................................... AATGATTCTAACGCAAAAAGTAACAGCAAT 363392 36 100.0 30 .................................... GCACGAGCATGGTTGGACGGATACGAGGTA 363326 36 100.0 30 .................................... GATTCTCCGGATATTGGAAGATGACTTAGG 363260 36 100.0 30 .................................... TTATTCAAAAGTACTTAAAATTTAAAGGGG 363194 36 100.0 30 .................................... CCAATTTCGCTTAAAATATTATGTGCTCCT 363128 36 100.0 30 .................................... AAAATGGTGATAGGAGCAGTTGTGTGGGGA 363062 36 100.0 30 .................................... CGGAAATTGACCAATCAATCGAATCACAGT 362996 36 100.0 30 .................................... TGTTTTATGCAAGTGATCATTTAAATATCG 362930 36 100.0 30 .................................... ATATGCTATCAAAGGCGCATTTGAAGCGAC 362864 36 100.0 30 .................................... AGTTGAACTAAGTATTAAAGCGACTATTGA 362798 36 100.0 30 .................................... AGCTAGACCTTGCTATGATTGACAAGACAG 362732 36 100.0 30 .................................... GGTACAGAACTTCAAAGATCGCAACAAGTG 362666 36 97.2 30 ..................T................. AAATGCGTTAATCGGAACAGTAACAACGGA 362600 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.7 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : AAATGTCCCTTTCTGTTTTTTTAAGCTTTCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTCAGGACTATTTTCAGGGAAATAATATAAACTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAACTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACACTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTCCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGATAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGATTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTTGACCATGCTCGCACAGTTACTTGACACTTTTCATCTTCTAAGAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACCTTAACTACATTTTTAGAATCACTTGTTATTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 367258-366892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYR010000001.1 Listeria seeligeri strain FSL L7-0191 NODE_1_length_453130_cov_59.807713, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 367257 36 100.0 30 .................................... TATTAGCGGTGGAAGAGGTTGACCGTGGGG 367191 36 100.0 30 .................................... AGTTGCGACTTCTTAAAGGTGAACCGTTGC 367125 36 100.0 30 .................................... TTCAGGATGTAATTGGTGCGCTTGAAATTC 367059 36 100.0 29 .................................... TAGTTGATGTTCTCACTATTGATGATAAT 366994 36 100.0 30 .................................... AGGATAAGCAGTTGCCGTACGAATTTAGTA 366928 36 80.6 0 A..........................A..AA.GTG | T [366907] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.8 30 GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Left flank : GCAACAATGGTGTAAATAAAACATTAAAAAGCATTTGCAGTCGTCTTAACATCCAGCCAATAACCTGACACGTCTTACGCCACACTCATGGTTCTGTTCTTTTGTATCATGGTTTGAAAATCAAATATATTTCAAGAAGGTTAGGACATTCAGACATAGTTACTACACGTCAAATCTATTCTCATGTTTTAGACGAATTAGAACAAATGCAAAATAGAAAAGTTAATCCCATTATGGAAAGATTATTTTAGGTGTTGTGCAACCATTTGTGCAATCTTTTTTATAAACATACCTTTTTTAACACTTTCTCAAATAGAAAAAAAGAACTATAAACGGCTACACAAAGCGTTTTATAGTTCTTTTATCTTTTTCTTTATCCTTCTATTAACGTCCTTTGCGAACGTCCTTTTCTTTTAATTTCCATTTCATCTTCATCTAAAGTTTCCTCTCTAATATCGACGAATTTTTAATAGCCACTAATATAGTTATCCACATCTGGT # Right flank : CTTTAAAAGAATTACTTCATCGTTAATAGTGTTTCTACCAGTTGACAGTATTCATTAGAAACTTGATTTGAAGAAACAGTACTTTTTTCACCTAAGTGGTGTATTTTTTTAGGGTGGAGTTTATCAATTTTCAAATGATGATTGTTTTGATATAGCGGTTTAAATGTCACTTCCATTCCATGAGAGTTTAAAATTTCTTTCAAAGATTTAGACACCGCATTCTTTAGTTTGCGATCATAGGAAAGTACATCCCGAGCATCGTCAAATAATTCTAAAATAGATTTCCTTAGCTGTCCGTTAAGGTAATTAAAATGTGAAATGTTATTTCGTTTTTCTTTCAATCGGTTATCAAAAAGTTCTAAGTACTCTAAGGTTAATCGTAATTGCTTAAGATCAACTTTTAACTGGGGATCATTTTTTGATGATACTTTTATAGAGGCATTTTTTAGATTATACAATTCGTAGTCGTTATATTTATATTTATTTTTATTTTCACTTAA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 108318-106478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYR010000003.1 Listeria seeligeri strain FSL L7-0191 NODE_3_length_327269_cov_80.430915, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 108317 29 100.0 37 ............................. ATCCATGTGGTTGATTGTTTGCAATCTTAAGTCCATC 108251 29 100.0 36 ............................. GTTACATGATGAAGCTGAGACAATGGAAGAGTATTG 108186 29 100.0 34 ............................. ATTTTCATCATCCCATCTGTTTTTGACATAAAAA 108123 29 100.0 35 ............................. ACAATTGCCAATTGCAAAACTCCTTTTAATATGTA 108059 29 100.0 36 ............................. ATTCCTACGAGAATAATGTATACTAGCGCGGTAAAC 107994 29 100.0 34 ............................. CATGCCGTACTCGTCAAGCATGCTGTTTGTATAC 107931 29 100.0 37 ............................. AATGAAATATACTTTCCGACTTCATCGCGCATAAGTC 107865 29 100.0 36 ............................. TTCTTCATCCCCATATACAACCATCTCTAACCCGTC 107800 29 100.0 36 ............................. ATGACCGCATTATCGTTGACAGAGACAAATGGAAGT 107735 29 100.0 36 ............................. ATAAAAATGGCATACAATAAAATTCTCGTACGGTAT 107670 29 100.0 34 ............................. TCCCACCAGACATCATTTTTTTAGATTCGCTATG 107607 29 100.0 36 ............................. TAAAATTACTAAGGGCGACCAGGCAGTTAGTAAGTA 107542 29 100.0 34 ............................. TTCTCATTTCGTTATATTCTGCTTCAACTTCTTC 107479 29 100.0 38 ............................. TTTACCTCGATTTCCAACTTTGTATCAAACGGAATATC 107412 29 100.0 34 ............................. ACACTGCCTTCAATTGTTGTACCGTCCAAAATCG 107349 29 100.0 35 ............................. ACAGTAAAAGGAATTGCAGAAAAATTCGGAGGTTT 107285 29 100.0 35 ............................. TGTCGAGTTGTTGCAAGGCATCTAGACTATCAATT 107221 29 100.0 37 ............................. CGAGAATCTTAGTTGTCGTGTTTGCGTATTGTTATCT 107155 29 100.0 35 ............................. GTTTCTGGGAAATATTCATCTAAGCCACCAGCGAG 107091 29 100.0 34 ............................. AAATTATAACTTTGTAATGCTAAATTTATATCTC 107028 29 100.0 36 ............................. CAGGTATAAATAGTAAGTTAGAGCTTACTAAAACCG 106963 29 100.0 36 ............................. AATAAAAAAACAGGTTTATTAGAACAAACGGATGAA 106898 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 106832 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 106765 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 106701 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 106636 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 106571 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 106506 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 29 29 98.2 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGGTATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 117785-116916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYR010000003.1 Listeria seeligeri strain FSL L7-0191 NODE_3_length_327269_cov_80.430915, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 117784 29 100.0 35 ............................. CCTCATTTATTTTGGATATTCGTGCGCTTCGTTGA 117720 29 100.0 36 ............................. GAAAAAAGAAGTCCAGGAAGAGCTGCTTCGCAGTTG 117655 29 100.0 36 ............................. TAAATTGCTTCTATGATAACGTCCTCGTCGTAGTTG 117590 29 100.0 35 ............................. GAAAATATGAAATTCAGACATTCTAAAGCGCTCTT 117526 29 100.0 35 ............................. AGAGTACTGGTAGTTCAAATGGAGGGAGCGCTGGA 117462 29 100.0 34 ............................. TTGATTACTTTATCTTTTGAAGTCGCTTTTTCTA 117399 29 100.0 38 ............................. GCGCTTCTACATGAACTATTCTTCATTGATTCGGCATC 117332 29 100.0 36 ............................. AGAAATGGAAAATGTGGACGACAATATGGAATCGGT 117267 29 100.0 35 ............................. ACAACCATCACTTTTGATGCGTCGCCAGTCTTAGC 117203 29 100.0 36 ............................. ACTTTTAACGCATCATCTTTTAAATTTAGAACTGTT 117138 29 100.0 37 ............................. TTCATTCCGTTTCCGGAAGGATTTATATTCCCCTGAA 117072 29 100.0 35 ............................. AAATCAATAGAATTTACTCCGTTTATAGCATTATT 117008 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 116945 29 86.2 0 ........C....C..A...........G | T [116918] ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACCCCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCAAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 124619-124006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYR010000003.1 Listeria seeligeri strain FSL L7-0191 NODE_3_length_327269_cov_80.430915, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 124618 29 100.0 35 ............................. TATCTATACTGAGCGATAGGGACATTGCACGAGTC 124554 29 100.0 35 ............................. CCAGAAAATTGCGACTTGATGATAAGCAACCCGCC 124490 29 100.0 36 ............................. TTAGAGGAGAGTTACATAACTGGTAAAGAAATTGGA 124425 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 124360 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 124295 29 100.0 36 ............................. TTTTTTCTTATCTTCCGTCCATTTTTTGCCCGTCAA 124230 29 100.0 36 ............................. CCGGGATTGTTTCTAGAAATAACCGCATTAGAAGTT 124165 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 124100 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 124034 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCTATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGCAGAAAACAAGAGGGATTGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGGTGGGAGTAAGAGGAAAAGTGAACGA # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAATTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCGAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //