Array 1 29264-27796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010573.1 Moraxella catarrhalis strain MC1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29263 28 100.0 32 ............................ AATTATAATGCTGAATATGAGGATAATATGAT 29203 28 100.0 32 ............................ AAGGAGGTTGCCAATAACTCATTTTCGCCCAT 29143 28 100.0 32 ............................ AATCTTTGGGCAACCGATGACATCAACCAGTG 29083 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 29023 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 28963 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 28903 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 28843 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 28783 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 28723 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 28663 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 28603 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 28543 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 28483 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 28423 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 28363 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 28303 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 28243 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 28183 28 100.0 32 ............................ AAATCACGGATAGATGATGTATGACCATTCAC 28123 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 28063 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 28003 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATC 27943 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 27883 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 27823 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //