Array 1 109761-108847 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000011.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 109760 35 100.0 39 ................................... AAGTGAGTCCAGTGCGAGTAAAAATCCCTTGTGCAGGAT 109686 35 100.0 36 ................................... CATTTGTTGTTGAAACCTGCTCTCCTTGAAGCTCAA 109615 35 100.0 38 ................................... TACATGTCCCATTCTTGGGAATGTGCTGGAAAATTCGC 109542 35 100.0 40 ................................... TGGATCGCCACATCGCCTTCCCCGTTGGGAAGGCTGAAAA 109467 35 100.0 39 ................................... TTCCTGAATATACGCCAAATGCGTATAGACAAAACTTGG 109393 35 100.0 40 ................................... CGTCATTAGGAACGTATAAAGTTGCCTCTGCTGGGGTGGA 109318 35 100.0 36 ................................... ATTTTGCGGGTGGTGGGGCAGTAAACCGTTACTATT 109247 35 100.0 35 ................................... AATTAGAAAAGTCAACCACAGCTTCTCCTACAACG 109177 35 100.0 39 ................................... TTTTGCCAGTCTGCACTCCAGTATCAGCACTTGCAACTC 109103 35 100.0 43 ................................... AATAATTTCTATAGACATCTTTGGCTTCTGCGGGTGCAGAAGT 109025 35 100.0 37 ................................... CTTTGACTAGGAGTCATGAATTGACGCATATTATTAT 108953 35 100.0 37 ................................... CTAGCATAAGGGTTGAATCGGGCAAAACTATCAAAAT 108881 35 88.6 0 ............................CAA...A | ========== ====== ====== ====== =================================== =========================================== ================== 13 35 99.1 38 GTTTTCAACTAATTACCCCTCACGGGGATGGAAAC # Left flank : ATGAAATAGCCACAAAATGGGCGACAATATTAGCACGGCGAGAAATGGGAGAATCGTTGCAAGTGGTAGCGCAAGATTTAGAGATGCCTTATGAAACGGTGAAAACTTATGTTAAATTGGCGCGACGGGCGCTCAAAAATGAGGAGTAGTTTGGTATACTCATCGAATGTGTAGCGGAACCTTGAAAAGTTAATATTGCGTTTACCAATAAAGGTAAAAGTGTTTGTTTTTACTTTTAACATGCAAGTTTTTAGCGGGAGTAGAGCGATCTTATATTTCCTTTATATTTCCACTCGGTTAATAATCACCTGAGGGGGACGGGTAACACCTGAAACCCTTATTCTTTCGTTGACCCCCTCAGATAACTTGCTGTGTAAAGGTTAGAAGCTTGTCAGCCTAAAGCTAATTGAATAATAGTCTCAATTATTTAGTTGTCACAAACACCCCCTCAGATTTACATCCCTCAAACGAAGTTATTTCAAGGTTTCTAGGAAGGTAGG # Right flank : GACGCAAGCAAGGATATTATTATCGTCAAACGCTATAAATTAACTTATGGATTGGCTACCCTCAATTGACTTATCTCACGTTTGGGATTTTGTTATTGCCCAAATTCCAAGACCTACCCCTGCATCTTCACCGTTATCAAATACGGCAAAAATTTCTAATGATATCGAACTATTAAAAAGTCAAATAGAGGTTATTAAAACTACAAATGCCAACCAACTAGAATTTCTCAAAAGTACAAATATCCAACTCAACGAAAACTTTAATAGATTTGTTGCAGCGATGCAATTTGTCTTAGTTGTATTTGCCTTTTTGGGTGGACTTTTAGCTTATGTTGTAGGTAAAAATTTAGATGATGCGAAGAAAGTAGCCAGTCAATTAATTAACCGAGAAGTAGAGAATAAAATTACAGATTTAGTTCAATCCGAAGTTGAGAGTGTCAAGCGTTCTTTGCAGCGTGAAAGGGTAATTGGTTCAACAATTGTAGATTATTATTTACCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAACTAATTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 115697-116974 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000011.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 115697 35 100.0 37 ................................... TACTCTACTTTTCAAAAAAGCTGTCAAAAAAATCAAA 115769 35 100.0 39 ................................... CTTTCCGTCCGATTGTTGCACAGGGAGAACTGGCTGCAT 115843 35 100.0 35 ................................... ATAGTGCTCGCGATTTACGCGAAGCTATTGAAGGT 115913 35 100.0 36 ................................... TCAAAAATAATACAGTTACGCGGATTTACGTCAACG 115984 35 100.0 36 ................................... CATATCTTGAGGTTTTTAATGTTATGGTAAGTTATA 116055 35 100.0 39 ................................... TCCTTGCGGACAAGCATTAATTGAGTATTTAGAATTACA 116129 35 100.0 41 ................................... GTCTTTGACTTTCATCTCTGTTTTTTCATTGTTAAACTTTT 116205 35 100.0 38 ................................... TTTTCAGCATGTTCCGTCTTGCGATGGAACATGTAATT 116278 35 100.0 41 ................................... TATAACAACTCTTTTGGAGTTATTGATCAGCAGGGTAAATT 116354 35 100.0 35 ................................... TTGTTTTTGGGTAGTTCTTTGGCATTCTCTTGTTT 116424 35 100.0 43 ................................... TTGATGCAAACCTCAGAAGTTTCCGTATGGTCGGAAACTTCTT 116502 35 100.0 41 ................................... GGATTTTTTGACAGAAATGGCAACGCAAACGGCAATACTAA 116578 35 100.0 39 ................................... CTTTTCTCCAATGTTTTTGTCATACCCAATTACAGAAAA 116652 35 100.0 37 ................................... CTATTACTTTGACTGGGATAAAAAACGTGAATAGAGG 116724 35 100.0 37 ................................... CGTTACTGTTGATAACAGCAGAAATGAATCACCATCA 116796 35 100.0 37 ................................... ATAAGGTTGCAAGAAACAATAAATTTTCAGGGGAAAG 116868 35 100.0 37 ................................... ACGGAGGTGGCGATCGTCGTGACGGTGATTGCTAATT 116940 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 18 35 100.0 38 GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Left flank : AGTGGTAGCAGTGCTGGATTATTGAGAAACAAGGTAGAATTTTCTTCCCACAAGCGTACAACTCGGTAACGGTGAGTTGTTATTTCATCAATATACTCTTGAGTAAAAGCAATCTCGTCACTTGTTTCCTGCAAAAATATAACTACCTGTGTAATAGGAAACTTATATTTACGTCTCAATCTCACAGAGTAATCCAGCATTCTAAAGGGTAGCGGGGGTTTTGAGATAGTACGGGTCTGGAACTCGATGTGTAAAATTCTCTCTTGAGTTTGCACAAAGGTAACAGAATCTGCGCGGATTGGTTCTAAAGAAAGTTCCGTTTTAAGTATTTTAGCCTCTGTGGTTTGAGATGTTAATAACCAACGAGCAAATTCGAGTGGATATTCTTCTGCTAACAGCTTACAAATATTGTCCGTGTTCAATTTTTACACCCTGAAATGAGGCTATTTTTGTGACGAATGTAAATACTTTATCATCATCGGCAAATGCGATCGCCACCC # Right flank : CCCCACCTTTCTGAAAGCATTACCAGAAGAGTGTTTTAAGGGTGTAAATCTGAGGGGGGTGTATTTTACCTGTCAATAGTCTACAACTATTGACATAAAGCAACATACTAAGCCACTTCAAATCCTTACAAGGTAAACGTTCTGAGGGGGTCAACGAAATAATAAGGGTTTCAGGCATTGGGCTACCCCCTCAGATCAACTTTCTTCACAAAAGAATTTTGGAAAAATTATGCCTTACATGAATCTTGACGATCAACAGGCTTAATTTGAAACTGCATATTTATGAAATTGTCAAGGTACAGCAGCGATGTGCAAAATATACCACATAAATTTCACAAAGCGCAATCCTTAAGTTTCTGTTTGCGTATCAAATTCAAAGTTATCTTTATGAGTGCTTTTTGCTTTTTAACTTCCGAAGCTAAAGTTTCCAAATCATTGGTCTATATAACTCCACCTCTCCCATCAAACAAGCAACATACTCCCGCACCTGTAACTCCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 122735-121245 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000011.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 122734 35 85.7 39 A.....G.AAG........................ TTTTTTGGACCGTCTTTGGCTCAGACTCAGGGTATACGC G [122729] 122659 35 100.0 35 ................................... AATTTTGAAATTGGAGACCAAGACGACTCAACAGT 122589 35 100.0 37 ................................... CATTTTCTGCGGTTCCTCAAGCTGAAATTCAGGCACT 122517 35 100.0 37 ................................... TAAATGCGTCAGCGAATCCCCAGGGCGACAAAATCGA 122445 35 100.0 37 ................................... ATTCAGCACACAGTATGGCTAAAGCCTACCCAGGCTT 122373 35 100.0 39 ................................... CTACTAGATCCAAAGATTGATACAATCGAGGAAGATGAT 122299 35 100.0 35 ................................... TTGGGGTTTGCGAAAATAACAGAACCCTATGTAAG 122229 35 100.0 43 ................................... CATGCAGTTGGTTCGTAATATTCGGGATTGTAATCCCAACATT 122151 35 100.0 36 ................................... ACTTGTAGCTCTACAGCCAGAGCGAGTAAAAAAAAT 122080 35 100.0 39 ................................... CAATTGATTGATCTAACTGTACAGTTAGTTGACGAACAA 122006 35 100.0 37 ................................... TGGTTGGTTCTTTGTTTTTTTCAGCAACCACAAAAGT 121934 35 100.0 36 ................................... TTTACAGTAGGGAATTTCCTGCTGGCAAAGTAATTT 121863 35 100.0 37 ................................... AATGCCAAAAACGATGCAAGGTACTTCTTTGCAAATT 121791 35 100.0 37 ................................... GAATGGGACTGGTAACTGTAACCAAAACCCGCAAACA 121719 35 100.0 38 ................................... GGTTCGGGAGCAACTGATGAAGGACAAACAAGATTTTC 121646 35 100.0 37 ................................... CATTGCTAGGTTAATTCCTAGCGACCCGATGTCTTTT 121574 35 100.0 41 ................................... TTTTGCGTTTGCACCCCAGCGGTGCCAGCGCAAAAGAATGT 121498 35 100.0 39 ................................... AAAAGCTATTCAGTTGGCAACTCAGACCAATAGCCAAAA 121424 35 100.0 38 ................................... TGGAGAAAGTGACTGCAGGTAATCCTGCAGACGTAGTT 121351 35 100.0 37 ................................... TTTTATTTGCTACTACCATAACGGTAAAGCGTGAAGT 121279 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 21 35 99.3 38 GTTTCCATCCCCGTGAGGGGAAGAGGAATTGAAAC # Left flank : ATAGCGTCCTTGCTCTCGATAAACTTCTGCGATATTGTTGAGATTAGTTGCAATTTCTGAATGTTCTTCACCAAGATGATGTTTCCAAATATTTAAAGCTGCAAAAAAGTTAGTCTCGGCTTCTGAATAATGTCCTTGTGATAGATTAAATACTGCGAGATTGTTTAAACTTTGTGCAACATCGGGATGCGAGCCAAACAACCGTTTTCTCATATTTAGGACTTCGATATACAAGGGTTTTGCTAACAAAAAACGCCCTTGCATTCGATATAATTCTGCTAAGTTATTTAAGCTATCTGCCAAAGCAGGGTGTTCTCCTATATCTTCTCGTCCTAGCTTTATCGCTTGTTGTGTAACGATTACAGCTTGCTCAAAATTACCTTGCTCAACAAGTTGCACTACTTCTTGGTTAAGTTGATTTAATTTTTCTATTATTTCTTTCATCTGCTCATTCGAGATGGTTATATATTTTTTGGTTCTTACTTGTTATTTTATGCAAA # Right flank : CCTACTCTTTTGAAACCCTTTTCAGAAGAGACTTTTAGATGCCTAAATCTGAGGGGGTAATCTAGATGGGCAAATAGTTGATAATAAGTCTCAAGAAAACTTAGAACAACCACCCTCAAACACTTGTGGAACAAATCATCTGAGGGGGTCAACGAAAGAATAAGGGTTACAGCCATCGGGATACCCCCTCAGAAAATTTAAGTATCCAAGCGAAGAATGAGTACTTTTACTCGAAATTAAAAACTTGAGATTCAATTTTCAAGGTTCTGTAATTATAAACAGTAGTATAACAAAGTACTTGAAATTTTGAAAGCCTGAAATATTAACTTTTCACTCTCCCTATGCTTTAAGGTATAAAAGTAAAAAGGCAAAATAAATATTAAATTCCTCTTTATTTTGACTTTTAACTTTTAACTTTTACCCTTTTACTTTACTGTGCAGTTACCATATAATCTGTATACCAAACCTGATATTCTCCGCATTCAGTTATGTATTTTAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : NA // Array 1 30479-31606 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000020.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 30479 36 100.0 42 .................................... GATTGGAGGTTGAATTCTTCCGAGAACTCCGTCGGGGAAAAC 30557 36 100.0 36 .................................... ACTTGATAAAGAATTTCTTGATCATCAAGTTGGTAC 30629 36 100.0 41 .................................... AGTAACCAATTTTGCGTTCAACATTTTTCAGAAATCCTTAA 30706 36 100.0 38 .................................... GGAACAGCTTCCGTGATGCCTCTTCTAGCTCTCACAAC 30780 36 100.0 39 .................................... ACTATAATACCATTCACGATGTCGTGAAGAATCTGAATA 30855 36 100.0 37 .................................... GGTGAGAATTACACTTCTCAGGATTACTTGGACCGTC 30928 36 100.0 35 .................................... CAGTTGACCTAGATTCTCTTCATTCATTTTGTGGT 30999 36 100.0 32 .................................... TAAAAAAGTAAAAAATTCCACTTTGCTGGATA 31067 36 100.0 36 .................................... CATCAGATGATACCTCCTTTGCTGGAGGTTTTTCTT 31139 36 100.0 39 .................................... CTTTGTGCATCTTGCTTGTTATCTGCAAACATATTAGTG 31214 36 100.0 35 .................................... TTGAAAACTCCAAAAAGTAAAGGTAAACTTTGAAA 31285 36 100.0 32 .................................... TTAGGTTAGCATATCCTCTGTTCAGAAATGAC 31353 36 100.0 31 .................................... CTAGTCCTAACCAATCAACGTATTGGTCACC 31420 36 100.0 39 .................................... TTTTTTGGAACCCGCCACTTTAAGTCCCAAGAAAATCAG 31495 36 100.0 40 .................................... ATTTTGGAAGGATGGGGATGGGGTTTGAGCAATGTTTGAT 31571 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 16 36 100.0 37 CTTTCCGATCACATTACCCCGCAAGGGGATGGAAAC # Left flank : GTCAGAGATTGAAGACTACGGGGTGACACAAGAAGAGTACTTGGATGGACTGGCAGCAGGAATTGATGTTTTAGAATTAAAGCGACTGGAGGCAAGGGGTATTTCTACAAACTTGGCTTTAGAAGTTATGGCGATCGCACCGAAAGTAATCGACGGCACAGCCACCCCTGAAGAAATTGTTAGGGGAATAATGATTCTGACTCCATCACTCAGGCAACAAATTGAATAGTTCATATACTGCAAGCGTTTAATTTTGTATTGTTGCCTTGATAATTACTGAGGGGTGGTGTATTTTATAAAGCAACGCGTCGAGCTTCATCGACACCAGTCGCCAGAACCTTGAAAACCGCATAACTTCGTTGAGTGGTGTCGATGCCTTATGCAGCAACGTTTCCAGGCTGCAAAATCGGCTAACTTTTGGAAATTTTTTGTGATTTTTCAGAGTGGTGTCGATTAGGGTATCTGAAACACAATCACAGCAAGGGTTTCAAAGGTTAACT # Right flank : CTTTTCCAACCTGAATAGTTGGTATTGAGCCGAGATCCAAGTAATTTTCTGCAAGATGGTCTGAAAACCCCTGTGCTGTTGGGGTTTGAAAAATTGCTATATCAAAGTCAAAAAAGCCGTAATTTACAACGTAAAATCAAGCCTTTCCAGGTCATCTTGCAGAATTTTGGTCATATCTCGGCTTGATACCAATTTAACGTCGAGTCATTCTTCTCTTCCATCAGTAAACCAAGCTCAACCCAAGTTGGCTGTATTCGCAAAAGAGAGTGAAGATGTTGCACTCCACGTACCATCTCAAAACGTTAAACCGTTGGATGTAAGTTCACTGCCAATATTAGGGGAATACAAATAGATGGATTTAAACGGGAACGGGAGTGATGACATCAACTTACTTACTCAATTTAAGGAGTATGCAGTTTTACATCCACAGTTAGCACGGGTAGATATGCTGCTCATGCGTGCGATTCGAGAACCTGCCGGATTTGCTCATGTGTTGGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 39348-39887 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000020.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 39348 36 100.0 37 .................................... TTTCAGTGCTTCTTCGTCACCACTAGCAAGAGCCTCT 39421 36 100.0 35 .................................... TTTTGTTACAGTAGACTGTAGCCTCTTGGTTTCCA 39492 36 100.0 38 .................................... CTTACAAACGCAAAACCGTCTATTACCTTATCTTTATT 39566 36 100.0 32 .................................... TTCTAGATGTTGCCCGCCTTCTGTAACCAGAA 39634 36 100.0 36 .................................... CAGGTTCCTCGCCCCTTCTATCAACAACCCTATCGA 39706 36 100.0 34 .................................... TGGGTAGGTTCACCATCATCTTCGGGATGGTTGG 39776 36 100.0 40 .................................... TTTGTTACTCTCTTTAACCACTCTGTAAAGTGGTTTTTTA 39852 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 100.0 36 CTTTCCGATCACATTACCCCGCAAGGGGATGGAAAC # Left flank : ACTCCAAAGAAATTTATCTCAACAGCAGTGCTCGTGACTTCATTCTGGAACACCTTAAACAACAGGTGGGCTTGAATGCACATAGTCCATTTCCTATCAATGCGTAAGTTTTATGAATTACTTCAGTTTTTAGGAGTTTCTATGCGGATTGCTCAAATTGCTCCTCTTTGGGAGAGAGTTCCACCTCTTGGTTATGGTGGAACAGAATTAGTTGTGAGCTTATTAACCGATGAATTAGTTAGGCGTGGGCATGAGGTAACGCTATTTGCGTCGGGAGATTCAATAACTTTGGCAAAGCTGCAATCAGTTGGTATTGAGCCGAGATCCAAGTAATTTTCTGCAAGATGGTCTGAAAACCCCTGTGCTGTTGGGGTTTGAAAAATTGCTATATCAAAGTCAAAAAAGCCGTAATTTACAACGTAAAATCAAGCCTTTCCAGGTCATCTTGCAGAATTTTGGTCATATCTCGGCTTGATACCTAGTTGAGATAAATGAAGAAA # Right flank : CAATTTTATTTTCCGAATTAAAATTCTCTATATAAACTTTCTGATCACATCATCCCCAAAATACAGTATTTTAGACTTTTGCGTACTCAAAAACCTGAATGTTCATTACTCCCAAGATATAAATAGTATTGACGATTTTGTGAAATCGTCAATTTTTGCGTACCTAAAAACTCAAAAACCCAACTACCCAAATTTTTGACAGTCTAAATATTCACGCTTTGCTGGTAAAGTATTAGCATCAAACTTTCACATTTTTGCGTACTCAAAAGTGTAAAAGTTTGAATGTTCAAGTTTTCAGCAACGTAAATATCTATGATTATCACTGTTGCATCGTTCAAGGGGGGCGTGGGCAAAACTACAACTGCCGTCCACCTTGCCGCTTATCTCCAAACAAAGGGAGAAACACTTCTCATCGATGGCGACCCGAATCGGTCGGCTAGTGGCTGGTCGAAACGTGGCGATTTACCATTTAAAGTTATTGACGAAAGACAAGCCGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4137-4454 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000042.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 4137 35 100.0 36 ................................... TCTCTGTAGAAAAAAAGGTTGGTTCATAGCCTCTTA 4208 35 100.0 33 ................................... CAGAACTGGTACAAATATGCCAGTAAAAAACTT 4276 35 100.0 38 ................................... ATTTAAATCCTGCATCAGTAGGATACCAAGATATTATC 4349 35 100.0 36 ................................... CTCTAACCAAGACAATGCGTCTCAAGTTGGCAAGGA 4420 35 97.1 0 ..................................A | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 99.4 36 GTTTCCATTAATTCAACTTCCGAAGAAGTTTAAAG # Left flank : CGAGCGCAAACATTAGTATCCAGCAAATATCTCACACAATTTCTTCCCTTTCTTCAAAATCGCCCTCGGAATCAATAACAATGGGGTCATCCTGACAACTACCATACGTCCGCTCAAAAAAACCAGGAGGCCAGCCTAATTCTTCTGGTGTTTTTTGCTGTTTTGGTGTTTCTATTGGTTGATAAATAACCATAATTTCTACTTGTTTATCTGTTATCCCCACTGGGATATCTAAATGTAAAACACCATCTTCCCCGACACGCTTTGTTAATTTAATACTGTACATTATTGTTTATCCTTATTTTTGCATGAATAAATTTTACAAAATCTAAAACTTCTTCGTGTTTTTCTTTGTCAAGCGCCATTTTGCTAATAATTCTTGTTCGGGACTCATTTGTCTTCACCTGTGACTGTTACGACTGAAGAACGCATTAAATATTATATGTGTTTCAGCTTCCACTAATATAACTAATCTAAATGCGCGTTCCCCAAAGACCAGA # Right flank : AAAAAAAAAAGGAAGCTGTCTTCAAACTCAAGTTACAGTTTCCGACGAAAATAAGGTGTACCCGAAGCATTAGTTAACCATTCCCCTTCTCGTCTGGGTTCTGGTGGCGGTGGCGCGTAAACTTTGCCATTGGCAAAGCGATAACCAAGAAAGGTAAACTCTTCATGGGGTGCAAAAACTTGCGTCTTTTCGGGTTGCAACTTTAAGTAAAGTTCCCCCAGCCAAGTTGTAATTTTGTCGAGAATGTGGTTGGCTTCTGACCAATTGTTACAAGCGATGGCAAAATCATCTCCGTACCGCACCAAATTAATATTGTGACTGAGGCATTTTCGATCAAAATCAGTCAGGTATAAATTAGCTAATGCTCCAGAAAGTATCCCGCCTTGCAATACACCTTGTCCGTAATTGATGTACTTACCCGCAATTACAATCCCGGCTTTGATTTGTTGTTCGATTAATTGCAGTACCGTTGTTTCCAGATGCAATGCTTCCAAGTTAGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCAACTTCCGAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 25846-23655 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000003.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 25845 36 100.0 37 .................................... CACAGGGAAGTATTGTCGATCCAACAAGTTAAAAATA 25772 36 100.0 39 .................................... ATTACTGGTATTATAGCCAGTCATCACTCCATAAATCCA 25697 36 100.0 38 .................................... ACCAATGGCTTTATCCCAGAGATAGCTAGCTGCACCTA 25623 36 100.0 33 .................................... GCTGAATACCGGCGGCAAGGGCAGCCTGGGCTC 25554 36 100.0 37 .................................... CATACAACAACGCCAAGGCAGCGCCTGATTCTGAGAA 25481 36 100.0 35 .................................... TATGGATCAACAACGCTACAGTTATCACTGTATTG 25410 36 100.0 34 .................................... ATTTAATTAGACGTTTATGGTATTCAATTTCAAA 25340 36 100.0 37 .................................... AATTAACTAAGGCAGAAGGAATTTTTATTTCCTTTAC 25267 36 100.0 33 .................................... TCGGGCTGAGCCGTTGGCTCTGGAGTCGGCTCG 25198 36 100.0 32 .................................... CTTTATACTTACTCCATTGGAATTCTCCTTTA 25130 36 100.0 40 .................................... TTTACAGGCACAGGCTTAAGATTTCCTTCTTGTATTTCTA 25054 36 100.0 37 .................................... CTCCATGGTCGAGGCCGTGAACTCGAATGTTTCCATT 24981 36 100.0 35 .................................... ATTTAAAAAGTTAAAGGGTATACTTTACCTATTAA 24910 36 100.0 40 .................................... GGATAATCACCATTTGCAGAAAACTTATTATAATAACCTG 24834 36 100.0 37 .................................... TCAGCACCCCAAGTTTCTACTGTGGTGATCGCTTTAG 24761 36 100.0 40 .................................... GTGCTGGAGATATGGGCTGAGGTACCTGCGTTGCAGGTGT 24685 36 100.0 39 .................................... CATTATACAATGAAGAATTTGCATTTCCTCCAGCTCCAC 24610 36 100.0 36 .................................... TCTGCATCGTTTGCTGCGTAGAAAATAGCAGCACTA 24538 36 100.0 34 .................................... GTATAGAAAGAAAAGCATCTTCTGGCATTTCACC 24468 36 100.0 37 .................................... TGCAAGATTGCTAATTCTTGCTACCCATTGTTTTGAA 24395 36 100.0 36 .................................... GTTGTAGCTAACGCCTAGGGTCAAAGACTGGAGCTA 24323 36 100.0 38 .................................... TTCCGGAGTTTGGATTGTATCCAAGATTCTGGATGGAA 24249 36 100.0 33 .................................... TTTGAGAAACTGCGTTTGGTGAACAATTTGAAC 24180 36 100.0 34 .................................... TTTAACATTGTACCCTCGACGTTCTGCGCTGCGG 24110 36 100.0 37 .................................... ATAAAGAGTAATTCTGATTTTGCTTCCTTCTAAAAAG 24037 36 100.0 32 .................................... CTAGACAATGCAGCCAATTCCTTTATAACAGG 23969 36 100.0 35 .................................... TCTTGTTTTGCCAACCAAGAGAAATCCTTCACCAA 23898 36 100.0 34 .................................... GCGGCGGTATCAGAAGACTTTACTTCTGCATCGC 23828 36 100.0 32 .................................... CTGCAATGCTGCACGTTGGTCATCAGGGGAAG 23760 36 97.2 34 ................T................... TGTTGGTCACCTCTTCGATGACCTGTCCATCCTC 23690 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 31 36 99.9 36 CTTTACAAACCCTCTTCCCCTAACGGGGATGGAAAC # Left flank : TTGGGACAAACGCGCTTAGGTTGGTCATCGCAAGTTTTGCCGGATGTACCGGATGTGGAAAGTGTGTTAGCGAAACGCATTGAAGATTTAGCAGAAATTTTTAAGGAAAAACGCAAGCGTACAGGTGGCGATCGCGCGGATGAAATAGCCACAAAATGGGCGACAATATTAGCACGGCGAGAAATGGGAGAATCGTTGCAAGTGGTAGCGCAAGATTTGGGGATGCCTTATGAAACGGTGAAAACTTATGTTAAGTTGGCGCGACGGGCGTTGAAACAAGAGGATTAAATACTTATAATTCAAAAATGTATCGAGAAATCGACACCAGTCGCCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATACCTTATGTAGCAAGGTCTCCAGGCTACAAAATCGGCTAACTCTTGGAAATTTTTTGTGATTTTTCAGAGTGGTGTCGATTAAGGTATCTCAAACACAATCACAGCAAGGGTTCCAAAGGTGAACT # Right flank : GTTCGGGGTCAGCAGGCTGATTAGCAGCCTTTAGCATTTCTCGGTCTCTTGAGGTACATATTAAAACCTCACCCCCAACCCCTCTCCTTGCTAAGGAGAGGGGAGATAAAGCACAGCTTTATCGGGGTGAGGTAATCGCGCTCACCTCAGTTGCCTAGGAAACGCTATATATGCAGCGTCGTCAGCCCAAAAAGGCTTGATAATTTTTTAATTCTTGTTCTGTTTCTGCTTTCATTTGGTAACGAATAGATAAAGGGGCAATAACTTCGCCATTTGGTCGCCATTCTCGCAAACGCATAAGAACATTGATATCACCAGCACGTATCCAGGCAATGTAATAAGCATCCTCTGTTGGGCATTGACTGACAATTTTTAATAACTGCTCACACTCCTGCTCATCTGGAATATTCTTAACAATCAACTGTGGTAATTGGTCATATAAAACTGCACGAAAAGTAGAATGTCTTGTGGTGTTATCTACATACCACTTGGCAAAATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCTCTTCCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 67298-64022 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000003.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 67297 36 100.0 35 .................................... CCCCAAGTACTACTTACTGCAATGGCAGTATTTAT 67226 36 100.0 36 .................................... TTTTAGGAAAAGCTACGCAAGAGAAGATAATATTAG 67154 36 100.0 36 .................................... CCTACGTCGTAAACGTGAACGTGAGCTTTGTCAGCC 67082 36 100.0 36 .................................... TTTGTAAGCAACTGCGATAGCTGCGGTTGCACCAGC 67010 36 100.0 33 .................................... TTTTGTTCTCTTTTTATTTCTTTTTGCAACAAA 66941 36 100.0 35 .................................... GTTTTATAGCAGCGGCTTTTAGCCAAACCAACAAT 66870 36 100.0 37 .................................... ATCTTGCATTTCCTGAGAGTCTAGTGAATCCAAGATT 66797 36 100.0 39 .................................... TTTTGGGCAATAAGTCTGCTTGGCAGCGTTAGCAAAACC 66722 36 100.0 34 .................................... TCCTTGCCCTGGGGGGGACAAAGGAAACGTGCTA 66652 36 100.0 37 .................................... CAGTAGGTGCATCTTGCACCGGTCCGCATGCGGGATT 66579 36 100.0 37 .................................... GTTTGCTTGCCGTCTGGTCCAGTCTCTGGGCAGAGTG 66506 36 100.0 37 .................................... GACAAAGGAAACGTGCTAAAAGCGGTAGTTCCAGCGC 66433 36 100.0 37 .................................... TTAACTAGCTGCCCCGATGTTCCAGCAACTGGGTTGC 66360 36 100.0 37 .................................... TATATTTTTTTTACATGAACTAATTGTCCGCTATGGT 66287 36 100.0 38 .................................... TTTTATTGTTATTAAAGCCTACCCGTTTGCAATTTAGC 66213 36 100.0 34 .................................... ACGGCGGTAAAAAAAATGGGTTCGGAAATCAATT 66143 36 100.0 33 .................................... ACTGGATTTTCCTCTGATGACTTTAGCTTTTCA 66074 36 100.0 38 .................................... GTTGGAGGATGAACCTTCATACTTAGGTCCTCCAAAAA 66000 36 100.0 36 .................................... TTCGGGGGTGGTAAATACAGAACCACCTATAACTGT 65928 36 100.0 38 .................................... ATACATTTTAGGTTGTGAACCAATTTCGCATCCAATAC 65854 36 100.0 37 .................................... TAATTTTTTCTCTTTTTTATTTTTATAAATTAAAAAA 65781 36 100.0 35 .................................... CTACGAGTTACATCACCGCCCATCATACCACGGGT 65710 36 100.0 35 .................................... CTATAATTCAAGTCCATGGAGTTGTCCGACTTGAA 65639 36 100.0 34 .................................... ATCGCAAAACCCAAGTGCGTTTGCTCCTGTGGTT 65569 36 100.0 34 .................................... ATTTATTTAGCTCTCGCGAATGGTCAAGTCAACA 65499 36 100.0 34 .................................... GAGATTGTTTTTCTATGGATGCTTTTAGTATCCA 65429 36 100.0 37 .................................... TATATACTCAGCCTCTCCCCTTTCGAGGATATTAATT 65356 36 100.0 39 .................................... AATAGAAGTTTGCACTGTTACCAACCATAATAGCATATT 65281 36 100.0 32 .................................... TGTAACTGTGCCGGTGGTTAATTGATTACCAC 65213 36 100.0 37 .................................... ACGAAAAATTAAACTTCTCTAGTTTAAATTCTGATCT 65140 36 100.0 38 .................................... CTCTATAACCGCTACTAGAGCGTGAGCTTCTATAAAGT 65066 36 100.0 37 .................................... AAGAGGACGAGCCACTTCGGACAATCCAACGCGACGG 64993 36 100.0 38 .................................... CACCAACCTGGTGTCCAGTGATTGTTTGTACGGCGAAC 64919 36 100.0 40 .................................... AGGTTGATACCATACTTGTATGGTGTCACCAACGATAAGG 64843 36 100.0 38 .................................... TTTTTTAAGGCGCGCAATTCGCTGTTTAATCAAACTTG 64769 36 100.0 35 .................................... AATCACAAAAACCACCAAACGCACCATTTGATGGT 64698 36 100.0 34 .................................... CATCGGATTTTAAATCAACAGCAAAAGTGTAACC 64628 36 100.0 40 .................................... ATAATTTGAGAAGCAAGATCCAGCAGGTGCTGAAGTTTGG 64552 36 100.0 39 .................................... TGAACTGGGTGTTGCTCGTGACCACCCCGATATCGCCGT 64477 36 100.0 38 .................................... AATCAGGCTGAATTGAATCAGACATACATCACAGAGAA 64403 36 100.0 32 .................................... TTTGGCATAGTGGTGTTTACCAAAATATCAAA 64335 36 100.0 31 .................................... GTTGAGTAGTCATACTCATCTCCTTTGGTTT 64268 36 100.0 36 .................................... TTGATCAGCAGGTGGTAAACTTTTAGCCATGGGAAA 64196 36 100.0 36 .................................... ATGTTTGTTGGCTGAGGCATTGGATATTCTCCCATA 64124 36 100.0 31 .................................... ACTCAGTCCGACTTTGGCTGTCCCCCATGTT 64057 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ======================================== ================== 46 36 99.9 36 CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Left flank : AGTTTTGCACAAGCATCGATATCGAACTAATGCATAAACCGTTCCATACTCAATATCAAGTCCATGTTCTTTTTTTAACCACTCTACTATCGCACCATAACTACTAAACCCAATTCCAGTTTCCAACTCGATTTTGAGTGCGGCGATCGCAACATCATTTATTTTTCGGTTGGCACCAGGTGCTTTCTTAATTTCTAATAACCTAGAAAGCCCACCCAATCGATATTTCTGTAACCATCTTGTCACCGTTGAAGTATCTCTACCCAAGCGTTTTCCTAGTTCCTGCTGCTCCTCGACCTGCCCACTTTTGAGCCACCACAACATCTGTAACTGTTCTTTCTGGCTTCCCAAGTTGGCTGTTTGTAAACGTTTTTTTAGTTCCTCTTCGCTCTCTGCGATTTCAATATTAAACGGACGACTCATGGGCATCTAAAGTTATCAAGTTTGCACTTCTCTATTATATGCAGCTTCATATTAAATTGGTATTAGAGCCGAGGTTA # Right flank : AAAGCCCTCTAATTTTTAGAGGGCTTTTTTATTACTAACAAAATGTGAATTTTAGGGATTATTTTGCTAACGCTAATGATTATTTTTATAGATACGAATAACTTGATACTTAATTAATTTTTTAATTAATATCAAATTTGCCTGATTATTTATCATTAGCAGAGCCGGATTTTTTTTCTTCTTCTTGAAAATCAGATTTTGCGGAATTGTATATTTCTTTGATAAAATCCTTGTCTTTCGTAACTTGCTTTGTTGCAACTTTCAAGTTTGTTTCATTAATGGGTACATCTGAAGAAACAAGAAACATGATTGCTTTTAAGTAAGTCCAACCCATAACAGTAGAGAGAGCATAGAACGTAGTACCTGTTATTGCCATTCCTCCGGCTGTTCCTAAACCGGGCACTATTTTTAAAATAGAACCTCCAACTGAACTTAATATCATTCCAGGAATGATTGACAATATATTTGTTCCTATTGCTGATGCAACTGATTTTAAAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 71155-68472 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000003.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 71154 36 100.0 39 .................................... TAGTTTGGAATTCACTTTTGATAAACTAAAAGCTAAGTC 71079 36 100.0 34 .................................... CCTTGGTTTTGTGTATAAGAAACACCCAGATTGG 71009 36 100.0 36 .................................... ACGCAGATAATTACTTAGGTAATTGATCTTGTTCCA 70937 36 100.0 41 .................................... GATTAATGAATCCAGTTCCACCCATACAAGACTTACAGAAA 70860 36 100.0 38 .................................... CTTTAATCAAACCACTGCTCCTCATCCTCTATTATAAA 70786 36 100.0 34 .................................... TCTTCTAATTGTTTTTTTGAGAAATTATACCCTG 70716 36 100.0 37 .................................... ACTTCCATTGTTAGCCACTGGTCCTCCGTCTGTCACA 70643 36 100.0 35 .................................... GTTTATAGCAGGTAAGTTAGAGTGAAGCCGCCAAC 70572 36 100.0 35 .................................... TCTATTGATCTGTGCTGCAATTCCTGCTCTCACTA 70501 36 100.0 37 .................................... AAACTCTTCTTTACTAACTACACTTTCAGTTTGTGTC 70428 36 100.0 37 .................................... CTTCTGTTTCCTCAACTCCAAAGATTGATTGACTTAC 70355 36 100.0 33 .................................... GAGATTAGTTACGTTGTACAGTTGGGCGGTTGG 70286 36 100.0 43 .................................... CAGTGTGGCTGCTTGGCAGCGCTAGAGGGAACACTAAAGCCGA 70207 36 100.0 35 .................................... AGTAAGTATTCAATTTTTCTATCTACAAATATTAG 70136 36 100.0 35 .................................... TTGGAACTCCTGACTTAAATCGTCAGCTTCAGCCA 70065 36 100.0 36 .................................... TATTTCTACTCGAACTACTCGAACGGCTTGTTGAGC 69993 36 100.0 37 .................................... TCCAGGTATTGTGAGTATTGGTCACTTCACCTGAAAA 69920 36 100.0 34 .................................... CTATATCACAGAGAATCAACGCTGGCGATACACC 69850 36 100.0 31 .................................... ACGAGAGCCGCCAGCGTTGCTGATCCATTGA 69783 36 100.0 36 .................................... GTTAGAATTGCCAGATCCGTCAACAGAAGCATTTCC 69711 36 100.0 35 .................................... ACAGAGTTATTTCCGCCTCCACCAGTTGTGATTGC 69640 36 100.0 33 .................................... AGATTGCTTTGCATTTTGTTTTACCTCAATAGG 69571 36 100.0 36 .................................... TGTGTTATGCACACCACGTACTTTTGTAACTTTGGA 69499 36 100.0 36 .................................... GTTAGGAGAGATTGGCTCTTCTTGTGGAAGAGTGAC 69427 36 100.0 35 .................................... TGTTAAGCATTATAACAAGGAACCCACGCTCGAAT 69356 36 100.0 34 .................................... CCTTGGCTGCCGAAAACAGTAGTTTTATCACCAC 69286 36 100.0 33 .................................... ATTCAGAACTAGGTGCAGGTAAAGCAAACAGGC 69217 36 100.0 35 .................................... CATTTTAAAGTTGAGTCAAACTTTTGGCGACTATT 69146 36 100.0 33 .................................... ACACCAGTCATTTTGGTTGAACCAGCCGGTGCT 69077 36 100.0 36 .................................... TTTCCGTATTAGATTTATTATCTTTTTTATCCCATT 69005 36 100.0 36 .................................... AGTTGAACCTACTTGTAGTGCATTATACTACGTGAC 68933 36 100.0 38 .................................... AAAACGACCTTTTCTACCGTTTTGAGACAGGCAGTCGC 68859 36 100.0 31 .................................... AGTGGTCCTTTGGGCTCGGGATTTTTGGGTC 68792 36 100.0 34 .................................... TGCAGTTGCTCCAGCCAGAGTTCCACAAAAAATG 68722 36 100.0 34 .................................... CCTTTAGAATTGCCGTTGCAATTCGGATTTGTTC 68652 36 100.0 38 .................................... GATCGTACCCTTGATCTTCAACCCAAGACCTAAAGTCA 68578 36 100.0 35 .................................... ACCAAGCAGCCGGCCCGAGGATCAGAAGAAGCAAC 68507 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 38 36 100.0 36 CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Left flank : ATTATTACTGCTAAAAACGCTAGTAATTGTTGCATATAATATTTATGGTGATAAAAAGCGCACGCTTGTTATATCATGTCCGTCAAAATACCCGCAATTAAAAAACCTCACTCCAATAAAGCTACGCTTTATATCCCCTCTTCTTATTAAGGAGAGGGGTAGGGGTGAGGTTTTATGGAAATTATGGTTGATTAACCGGACACGATATTATCCAATTTTCTATAGGGTTACGGGCAAAGGCTAGAGAAACCAACAGCATCACCAAAGTATTACGTTATATAGGTTTTAGGATTATGAAGGAGGTTTTGTAACATGGTCATCGACACCACTCAACAAGTCGCTGAAATGCCTATTATTTCGTTGACTGGTGTCGATTGCTTACTGGGCAAGGGTTTGAGGTATGTGTTTTGCTCAATTTTAGAGAAGATGTATAATGTTTTTCAGAGATGCGTCGATTTGGCGGCTGAAACCCCTACTGGGCAAAGGCTCCTAGACGAACT # Right flank : TTTGAGGTCGGTCGCGCTTGCCGCGTTATACCAATTTAATATGAAGCTGCATAGAAAAGAGCTTCTAAAATAAAGTTATAAGAGGAGACAGAAATTACCTGCTCAGATGTAAGTCGATCAAATATCTCTTGTATGCGATCGCGTAAATTTTGTAGAGAAGAAAAAAGTTCATTTTTCAGTGATTTTTTAATGAACTGCCAAAGCCTTTCAATCGGGTTAAGTTCCGGAGAATGCGGTGGTTGAAGCAAAGGTATAATATTTTCTGGCCAGCGAATCGCGGAACTTATATGAGCGGGAGCTTGATCAATCTGTAAAATTGCATAGTCGTCACCTAATTGCTGAGATAACCAGTCTAAAAACTGTTGAAAATACTCACCATTGAGTTTGGGATATTCATGTTGAAAATGTTGTCCCGTTAAGGGAGCGATCGCACCATAAATCCAAAAATTATCTCGTTGCCATTTAACAGATACAGTGGGCTTAACTCCAGCAGCCGTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 80458-77645 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000003.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 80457 36 100.0 37 .................................... TTTTCTCCCATAGAATTGTCTACGGGTTTTTCTGATC 80384 36 100.0 39 .................................... AATAATAAAGGGGCGCTTCGTTTGGGTAGACGGGTTAAA 80309 36 100.0 37 .................................... CTTACACATTTTGCCTATATCAATCTTCTTATACCGG 80236 36 100.0 35 .................................... CTTACAGAAAGACTTGTAATCGCGTGTGAATAATA 80165 36 100.0 40 .................................... GATAGCAATAGCGGGAATTAAGTTTTGAACTTTCATGATT 80089 36 100.0 35 .................................... GAATACATTGCGGATCAGAAAAATGATAGGGTTCT 80018 36 100.0 43 .................................... TATAACTGGAGATTGTATTGCCTTCTTTTCCGTAAGAGAGTAA 79939 36 100.0 35 .................................... TTTGAATGGCGGCAATAACTTGGTCTGCTTTGTCG 79868 36 100.0 40 .................................... AATTTTCATAGCCAGTCTCTCCTTCTTTAGGAAAAGGATT 79792 36 100.0 37 .................................... ACCTATCTCTATTAGCCTTTTTGAGATAAGAAATTTT 79719 36 100.0 36 .................................... TTTCATTAGTGCGTTTGCACTGTAACCTCCTGGGTT 79647 36 100.0 35 .................................... CTCATATTTTATTCTCCACTCCTCGGTTAAAACCA 79576 36 100.0 36 .................................... GCTGTTTCTAGTAGAGTTTTGCTCTACTAGAAACAG 79504 36 100.0 34 .................................... TTGCTACTTAGGAGAAGGCTGCCGTACCCATCTC 79434 36 100.0 41 .................................... TCTCTTGATAAAGTGAACTGAAATAGTTACACAAAAAGCCT 79357 36 100.0 37 .................................... ATTTTAAGTTTTACTTTCTAGGCTTGTGAGAGGTACT 79284 36 100.0 39 .................................... ACGGTTACGTTAACGGTCATTGTTTGAACCATCTTCAAC 79209 36 100.0 35 .................................... CAGAAAGAACATTTCGACCGTCTACACTAGTTACC 79138 36 100.0 38 .................................... CCTGCAGCTGCTACTGATTGTATAATAGCATCTCTTTC 79064 36 100.0 40 .................................... GCTCATTGGTCGGGATGACAGGATTTGAACCTGCGGCATC 78988 36 100.0 33 .................................... TTACACTTGTCATTAGTGCCTGCTCCTGATCCG 78919 36 100.0 36 .................................... CATTAAACTCCTGCTGAAGTCTATTGGAAATATCGT 78847 36 100.0 35 .................................... TTTTTGTTCTGCAATCTGTGCATCAACAACTTTAG 78776 36 100.0 36 .................................... ATTGCTATAAAAGCAATAGTCCAAAAAAATATTGTG 78704 36 100.0 35 .................................... GAAAGAAAGCGGCTCCTCTAGAGGAAGACGCCAAC 78633 36 100.0 37 .................................... TACCCGAACCTCTTTAACGTCCGTTTGTTTATTTACC 78560 36 100.0 36 .................................... ATTAACTTGGGTTTCAGCTTGCTGCTGCTTATTAAC 78488 36 100.0 38 .................................... CCGTTACCCAATCCTTGAACAGAAAATTTTCTTCCCGC 78414 36 100.0 34 .................................... TCAAACGTCCTCCCCCATACTGAACAACTGGAAT 78344 36 100.0 35 .................................... TTTAAGTGAAAAATTAGATGCGAATGATTGTGAAA 78273 36 100.0 39 .................................... AATGAATTCTTTTCTCTCTTCTTCAGAAATTTCTTGTAG 78198 36 100.0 45 .................................... ACTATTCTTCCAGGAGGAAGTGATGGTTGGTTCGTGCAAGGAAAC 78117 36 100.0 36 .................................... CATTCAATCCGTTATTTCCAGGAGTACCATTTTGAC 78045 36 100.0 37 .................................... GTAATGGAAGCGCTGCGGCGGTAATAGAAGATTTCAA 77972 36 100.0 32 .................................... TAAAATTGTTGCAATTTGTAAAATTTCATCAG 77904 36 100.0 42 .................................... CCTTTACCAATCGCAGTTGCGTTTGGAGAAAATGAATCGTTG 77826 36 100.0 38 .................................... TATTTGAAGGTCACCGCATCTGTGATCCCATCGTTGTT 77752 36 100.0 37 .................................... TTGAATCGACTCCAATTTGGTTTTTGGAGTTGCCCGA 77679 35 94.4 0 ..............................A-.... | ========== ====== ====== ====== ==================================== ============================================= ================== 39 36 99.9 37 CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Left flank : TAAAAATGTTAGTGCTTGTTGTATATGATATTCCTGATGATAAAAGACGCACTAAGTTATCCAATTTTCTAGAGGGTTATGGACGAAGAGTACAATTTTCCGTGTTTGAGTGTTTTTTAAGTTTGGAGGAAATGCGGCAACTGTTTGAGAAATCAAAAAAACTTGTTAAACCATCTGAGGATAATGTGCGATTTTATTGGATATCGGAAGAGGCTGTTTCCAGAGTGTTAACTATTGGTAGTGAAGAACCAGCAGCACCCCCAAATTATTATGTTATCTAGGTTTGAGGCAATTGAGGAGGTACTTTTCAGATGTTCATCGACACCACTCGGCAAATCGCGCTCAACCCTATATTTTTCGTTAACTGGTGTCGATTGCTTACTGGGTAAGGATTTCAGGTATGTGTTTGAGTCAATTTTTGGGAGAATGTACTATACTTTTAGCAGTGGTGTCGATTTGGTGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : ATAAAAATAAGCCCTCAAATTTATAGAGGGCTTTAATTTTAAAATTAGTAATAATTTCTCAAAAATAATTACAAAACTTGCAGTATTTGCTCAACAGTATTCGCTAAAACTACACTACGTAAAATTGCTTGCAATCGCTGCAAATCAGAAAATTGAGAAATTTGTGGCATTAATTCTAATCCCTCATTACCAAACTTGGCTTCTAAACTTGTTCGTATACTCGATATTATTCCCTGCACTTCTCCGCGTGCTTCTCCTTCACGTAATATTTGTTGATACCAGGGTGACTCGTGTAAAACTCCCATATCCCACCTCATGATGTCTTGAACTAAAGCACTTTCTAATACAAAAGTAGCAAAAAATGCCAAAACCGTCTCCAGTTGATTTAACTGTTCATCCCGACGCAAAACTTGCAGTGCTTCCCTAATTATAGACTCATCATTTCCTCCTTTGAGAATTGGCACAAAGGGAAGTAATGATGGCAAAGGTTGTTGAAACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 727-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000058.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 726 35 100.0 37 ................................... TAATCCTGTCCACTTCCACCGTTTTGGTCATTTTCCA 654 35 100.0 40 ................................... GTTTGATCGATTTTACCGTTCGTCTGGAATTTTGTATTAC 579 35 100.0 37 ................................... TCTCATAAACAGTGCCGTCTACTGTAGCTAAGTTAGA 507 35 100.0 35 ................................... TGACTTAGTTTTCACAGAAGCGAAGGGAGTTAAAG 437 35 100.0 39 ................................... GTCAGCTTCGGGCACTTCGTCGTGCCCAGTAAATTTTAC 363 35 100.0 35 ................................... CTGCTTCAGAGAGCGTAGCGGCGGCGTTGGTACCA 293 35 100.0 36 ................................... TAAAAGTATTCCCCACCTTTTTCCTTTCTCTCAATG 222 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 8 35 100.0 37 CTTTGGCTTCTTTGAAGTCGAATAAAAATGGAAAA # Left flank : ATCGATTGGCTGATGAACTTCCACGTCATGCAGATATTACTAAGGATAATCGGTTGTTTGGGAAGGTTGCAAAAGTGGTAATATTAAGTCGGGATGAGCAGATACCTTCATCTGTAGAAGTTGCGTTGATCAACTGGCTTGATGCTTGGGAGCAATGGGCGTATACTGCAAGGCAACAGGCTCTAATATCTAGAGAAAAAGCTTTGGGTGCTAATCCTGAGGATATAGGGATGTTACTACGTTTTAGTGCTTTTTGGGTATCGGCACAACAAAAGAAAATGTAATTTATTTTATTCTTTTGATTTACTTTATGTGGGATAGATACAATGGCTGAAACCCTGATTCTCTCGTTCTATCCCACAATTCGCTCTCTGGGTAAGGATTTGAAGCGCTGAGTAGAGGGGTTTATTGAGAATTATTTGCAATTATTTCAGTCAAAATTTGCATCCCACAAAAAAGTGCTGTAGGATTACTTCAGGGCAAGGCTTTCAAGCGGTAGC # Right flank : ATAGGTGAACTATATTGTTGAGCTCTTTTTATTTGTAAGTAGGTGGGCGGGAAAATTTATAACTATGTAACGAAAAGTTAATTAGAGCGGTCTGAGTAAAATTTAATACGTTCTGTACTGTAGTTGCCTTTTTCTCCCCTAGCTTTAACGCCATCAATCACGGCGTAAGCGAGGTCTAATACCGTTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGGCTTCTTTGAAGTCGAATAAAAATGGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 219773-223277 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000006.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 219773 37 100.0 34 ..................................... CTGATATAGCAGTAGTTGCAGGCAATGGATTATT 219844 37 100.0 36 ..................................... TCTAAACAGAACACTACCGGAAATCCTTTGTATTGC 219917 37 100.0 34 ..................................... TTTAAATCATTTATTCTATTTTCAAGAGACTGGA 219988 37 100.0 36 ..................................... TTAATTGGGGTAGAGGGCATCCGTGAATTTCATGAA 220061 37 100.0 35 ..................................... CAAACCTCGGAGACTTACGCGATAGTGGTTCAATC 220133 37 100.0 34 ..................................... TTAATATTTGTCGCGATACAAATAGAATTGTCTG 220204 37 100.0 34 ..................................... CTTTCCCTTTAAATCTAGGTTTACCAGATTTCTT 220275 37 100.0 35 ..................................... CGACATCATTTGCAGCCGGAACAGCGGCTACAGGA 220347 37 100.0 36 ..................................... ATCCCGGCAACCATAAACAATGGGGGCTTTATAACA 220420 37 100.0 38 ..................................... GCGAATGCAAGCGACCGCGTAACACGAATTAATCGCAA 220495 37 100.0 34 ..................................... ATACGAATTTGCAAATAAATTAATTGCAAGTTTG 220566 37 100.0 34 ..................................... AATTACGATCTTTGTTATAGGAAATATAGATCGC 220637 37 100.0 35 ..................................... GCTGATATGATTTCTGCTTTCAGTGAGCAGGAAAT 220709 37 100.0 34 ..................................... ATGTATTCGCCCATTGAAGCGAAGGCAGGGCGGA 220780 37 100.0 35 ..................................... ATTATTGATTACGGGGGTGGGTATCAAAGTATGTT 220852 37 100.0 36 ..................................... GAAGGGAAGGAAGGTGTAGCAGGCGATCGCTTACCA 220925 37 100.0 35 ..................................... CTCCCCCCAACCATGCCGATTCATCCCAGTCCAGC 220997 37 100.0 35 ..................................... CTAAAATAAAATGTGATGTGGGACATTTATGGAAA 221069 37 100.0 34 ..................................... TTCCATCTTTTAACTGCTGCATTAACTCATCAGG 221140 37 100.0 35 ..................................... TGTCAATGGTGCAAGAAGCGCTTAAAGTGCTGGGA 221212 37 100.0 34 ..................................... TCGTAAACAATTGCTAAAGGATTAACAATTATTT 221283 37 100.0 35 ..................................... TCATTAACGAATCAGACCCAATCTATTCAATTGGT 221355 37 100.0 37 ..................................... CCTGCACCCCCAGCAAAAGTCGCAGGAGAGGAACCGT 221429 37 100.0 36 ..................................... GAGTTTCAATTCCCCTGCCCTTGCAGAGTACGAACC 221502 37 100.0 35 ..................................... TAATTGGGGGAAGTGGACTTTCACTTTACTATCAG 221574 37 100.0 37 ..................................... AAAAGTATTGTTGGCGTTGAAAATTACACAAATATTT 221648 37 100.0 34 ..................................... TCTGAGAAGCCCACACTCTATTTGTACTCAAATG 221719 37 100.0 35 ..................................... AATAACGAAGTTAGTTTACAAGAAAATTCTAGAAA 221791 37 100.0 35 ..................................... TGGCATACATTTCTTGATTAGCTTGTGCTGCTTGC 221863 37 100.0 34 ..................................... ACGCATTTTTGTGCGTTAGCTCCAGGAAAAACCA 221934 37 100.0 36 ..................................... TCTATATTGGAACCAACTACAAATGTGGGGAGGTGG 222007 37 100.0 34 ..................................... CAGAAAATTCTAGGGCATGAATCAATTGAAACTA 222078 37 100.0 38 ..................................... GAATCCAGCGACATCGCAGCGAGAAACAATTCTACCTC 222153 37 97.3 35 .........C........................... AACCGAAGTTAAACGATGACGCGATCGCTTGTACC 222225 37 97.3 35 .........C........................... ATAGATTTTGCATCTCCCTGCTCTATCTTCTGAAT 222297 37 97.3 35 .........C........................... TTCGGCAAGCTCTTGATCTCTTCTTACAATTTCTG 222369 37 97.3 38 .........C........................... CAGCAAATGCACCAATCTTGCCAACTAGATGACGCAAG 222444 37 97.3 35 .........C........................... GATCTTCAGTTCAGCATCCCCAGAGAGACCTACCG 222516 37 97.3 36 .........C........................... CGACCGGGAAACATGGGACCGGCTTTTTTTGGTTGA 222589 37 97.3 42 .........C........................... TTCATACTGTGACTCAAAAGCTTAATGCTCTAGCCAAGGGTG 222668 37 97.3 34 .........C........................... ATATATAACGCTGACATGTGGAAATTTACTGCAA 222739 37 97.3 34 .........C........................... ACGGCGGGGATAATTTCTTCTAATTCGGCGTAAG 222810 37 97.3 34 .........C........................... CCCCAAGACCCAAAATACTGGTTTGGGCATCAAG 222881 37 97.3 38 .........C........................... GTTGTATCTTCTGCTTTACTCTTGTCTTTTGCTTTTAC 222956 37 97.3 36 .........C........................... TTTATCTGGGAAAAGGGTAAGTATAAATGCACCTAT 223029 37 97.3 35 .........C........................... GTAATGGGGTGCGGGTGCGATCGCATAGCAAAAGT 223101 37 97.3 34 .........C........................... CATGCTCTAAATATTGGCTATTTTTTTGGTTGGT 223172 37 97.3 32 .........C........................... CACATGGTATCAACCCGTTGGTGATTGATTTG 223241 37 97.3 0 .........C........................... | ========== ====== ====== ====== ===================================== ========================================== ================== 49 37 99.1 35 GTTGAAATTATACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAACGTTGTTGTCTCCTACGATATTTCTGAAGATAAACGCCGTACTAAAATTCACAGCACCCTTAAGTCTTACGGGCAATGGGTACAATATAGCGTGTTTGAATGTCAGCTTACTGATACCCAATATGCAAAACTGCGATCGCGCTTGAACAAGTTGATTAAGCCTGATACCGATAGCATTCGCTTTTACTTTCTATGCGCCTGTTGTTTTGGTAAAGTTGAACGTATCGGTGGCGAACAACCCCGCGATGAAACGATTTTCTTTGCTTAGTGCGCGGATGGGTAGGTGTAGAAAAAGAGGTTTTGATGAAAATGTCTCAATCGCCTGCAAGACAAGGCTTTGCCATTGTTTTCACTCGCTACCTACCCGCGCACCTTACACAGCAAAGGTTTCAGCCTTTTTTACCTTGTGCGATCGCCCTGGATTGTGTTATGATTTACCCATCCGCGCAACCGAACCTTGAAAACCTCATACTGGCTCATTTTTAGCCTCCTGGT # Right flank : CTTGCTCTTTTTACTGACTAGAAAGAGCTGACTGCGGTTGAAATTTTACTCATCAGGCGATCGCACAACATATCATATTTCTTAATTAAGTAGATAGGCATAAATAAACGCTCCTTAAGTAGCAACGGCTACCCTACGGTAAAGCTCCGCTAACAGCCGTTAAAATCTTTGCTTTGAGCGATTTACCGCTCAAAGCAAAAGAGTATTTTATGTTTCATTTATACCAAATATTTTTTGTAAAATCTTATACTATAAATTCAGTACTACCAAGGCAACTGATAACGAGCGATCGCTTTTTCCAATACGATGAATTCCTTTGATGGTGGCGTTCGCACTCCACTGCATAGATATCTTTCTATTGGTAGAGTAGACTTTTTCTGCGTTTTTATATAAACTACGGTAAGCCGATAGGAATTAAGTCATTATCATGTTAAATATCCAAAATGTCAGTCAGGATTTGAGCGTAGCCGGACAAACGACCTCTGAGCAGTTGCCACAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTATACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGAAATTCTACTTACTCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 357312-355332 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDUC01000006.1 Tolypothrix sp. NIES-4075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 357311 37 100.0 34 ..................................... ACCAGGCTTGACTTTATTACCCTTAAAACTACTG 357240 37 100.0 38 ..................................... CTTTGACAGATGACGGAGCAACAAAAACAGAAGAGGAT 357165 37 100.0 37 ..................................... ATCTCTTATATCAACTAAGATGGTAGTTGCTTGGTGT 357091 37 100.0 36 ..................................... CGCTGGCATCACATCTTCTGCTACTCGATACTCTTG 357018 37 100.0 35 ..................................... GGCAAGAAAATATGCTTATAATTTTTTGTTAACCT 356946 37 100.0 35 ..................................... AAAAGAATTAGAGATCAGGCTAGGAAAACCGTTGA 356874 37 100.0 36 ..................................... AAAAGACAGAAAATGAGAATAGAATTCGCTAGAACC 356801 37 100.0 34 ..................................... TTGCTTCTGCTCTGACCTTCGCTCGTTGCTTTTT 356730 37 100.0 33 ..................................... AAATAATTTATCTTAGAAAAGAAGAAACCTTTT 356660 37 100.0 36 ..................................... CTAAGTAAAATTTGATGTAAGACACGGGAAAATCAG 356587 37 100.0 32 ..................................... AGACAACCATTTACTTTCGCTCAAATCGTAGA 356518 37 100.0 35 ..................................... GGTAACTTCGATGAGTTGGAATTCTGGACGGACAA 356446 37 100.0 35 ..................................... CTCAACAATCACTCGAATAGCGCAGGGATTATTGC 356374 37 100.0 34 ..................................... CTGGAATAGAAACCCATCCAAAACCAGGCTCATC 356303 37 100.0 35 ..................................... TGCCTATAAATTCCCCCATTCCCCATACCTCTAGC 356231 37 100.0 36 ..................................... CGGACGACATACACACAACCACATTCACCCCAGAGA 356158 37 100.0 35 ..................................... AAACTTTAAGTAGTTCTTTGATTGGTGAATACAGT 356086 37 100.0 37 ..................................... GTGAATCCATTGTAAATCTAGGTATAACTTTAGTAAT 356012 37 100.0 34 ..................................... ATAACAATACTAAAGAAACAAATAAATGAATTGA 355941 37 100.0 32 ..................................... ATCATCTGCGTTAAAGGTGCAGTAGAACCTAA 355872 37 100.0 37 ..................................... AAAGAAGTTGTTTTTCCCAGCCCGGATATAGGCAGTT 355798 37 100.0 38 ..................................... AGAAGCCCAATTAATAGCCACTTGACGATACTTTTCGC 355723 37 100.0 38 ..................................... CCTAGATTGGCGTTGCCAAGGGGTGCGAATAAGATAGA 355648 37 100.0 32 ..................................... GAAAAATGATTGTGCTAGGCAGTACCTGTAAG 355579 37 100.0 34 ..................................... GAAACTAAACTTGAGGCAATTGCTCAAGGATTAA 355508 37 100.0 34 ..................................... CAATCTTTACACGATATTAATGATAACTGGAATG 355437 37 100.0 32 ..................................... GAGGAATTTTTAGTTCACCTACATAAAGATTG 355368 37 73.0 0 .........................AAT.CAACCT.T | ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 99.0 35 GTTTCAACTTCTAAATACCCCGTAAGGGGATTGAAAC # Left flank : ACTGAGGGATAACCGCTCCCATGCTCCCCGTGAAGTAAGAAGTAAATGTCTAGACAAGTCTAGGATTTATATAGCAGGACAGAGACACTAATGCAGCTATCAACATTTTGAGACTAGGACTCAGTACCGTAGGGCATACGGGAACTTACGCTACAGGAGATTTACCCTCTTGGGCGGTTGGCGCAAGCCTGTCGTCTAACGGCAAGTCGTTGAATGTAGAATCCCCGCCCTAAAAGTGCGGGGAGTGTCAACTGAGACAAATACTTTGTTGTGTGCGCGGATGGGTAGGTGTTGAGAATAGTGCAGGTAAAAAAATGGCTGAATTCCTTTATAGGCAAGACTTTAGAGTAATAAAACTATTTTACACATCCGCGCACCTTGTCTGGCAAGGGTTTCAGGCATTTGAATCTAGGCAAACGACTACTTTTTCTGCTAAGATTAGTTTATCCGCGCTACAGCACCTTGAAAACCAAATACAGATAGGGTTTCAGAAGGCTGCG # Right flank : TTCATCCAAACCTATGATTAATTTGAGTTACCTCTTACATATTTAATCACAGGATCTGTTTGTAAAACTTTGCCATTTTTGAGAATCTCTAAGCTCACACCATTGACAACATATTCATATTTTCCATTCTTAGCAATATATCCTGTTCCCTCTTCTGAGTAGGCTGAAAGAGAACGGATACCTTTACCATTAAGCTTGGAAGTGCTTGTATAAAAAAGCTTTCCACTTCTTTTACAAATATAAATAGAAAAATTACGTGTTTCGATTTGGGCTTCTAATATTCCTCCTCCTGCATACTTAGGGCAAGTAGATGCCGAAGCTATAATCTCAGTATTTATTGATGAAGCTTGAGTAGCCACTAATTCTGAGGCTACAGCAGAGGAAGATGTCCCAAATGTTCCAGTCAGTAGTGAAGCGGTAGCCAAAATTAGCAGAAATGATTTGTTCATTGTAGGTATTGAAGTTTGATTACTCTAAGCTTCAAATTCAAATTGCAGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTCTAAATACCCCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //