Array 1 222300-224250 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAXO01000034.1 Streptococcus agalactiae strain NNA024 contig52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 222300 36 100.0 30 .................................... ACTGCGGTCAAGCTCTAAGACTTTTGGGGT 222366 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 222432 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 222498 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 222564 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 222630 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 222696 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 222762 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 222828 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 222894 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 222960 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 223026 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 223092 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 223158 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 223224 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 223290 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 223356 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 223422 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 223488 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 223554 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 223620 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 223686 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 223752 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 223818 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 223885 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 223952 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 224018 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 224083 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 224149 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 224215 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //