Array 1 1002480-1004460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050734.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1002480 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1002541 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 1002602 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 1002663 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 1002724 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 1002785 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 1002846 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 1002907 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 1002968 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 1003029 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 1003090 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1003151 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1003212 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1003273 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1003334 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1003395 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1003456 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1003517 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1003578 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1003639 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1003700 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1003761 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1003822 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1003883 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1003945 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1004006 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1004067 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1004128 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1004189 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1004250 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1004311 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1004372 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1004433 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1020593-1021946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050734.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1020593 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1020654 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1020715 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1020776 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1020837 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1020898 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1020959 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1021020 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1021081 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1021142 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1021203 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1021264 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1021325 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1021386 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1021448 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1021551 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1021612 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1021673 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1021734 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1021795 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1021856 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1021917 29 96.6 0 A............................ | A [1021943] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //