Array 1 74227-73003 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRH01000025.1 Neisseria meningitidis 2002038 NM2002038.contig.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74226 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 74160 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 74094 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 74028 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 73962 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 73896 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 73830 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 73764 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 73698 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 73632 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 73566 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 73500 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 73434 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 73368 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 73302 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 73236 36 100.0 30 .................................... AATGACGAGGCTTTGGATTGCGAGGATTTA 73170 36 100.0 30 .................................... GCATTCTCCAACACTCGCGATACGGTGTTC 73104 36 100.0 30 .................................... TCATCAGACCTTTACTGTTCAGACGAGACA 73038 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGCGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //