Array 1 1111465-1112521 **** Predicted by CRISPRDetect 2.4 *** >NC_003551.1 Methanopyrus kandleri AV19, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================== ================== 1111465 36 100.0 57 .................................... ATGCAGGCACAATGAGTTTGCGGACAAAGACGATAATGTATTGTTAAGAGTGTATAC 1111558 36 97.2 60 ...................C................ TATGTTAGCTGGTCGAGGAAATTGTGGCGGTGTTAAACTCCGGAGAAACACGTCGAACCC 1111654 36 100.0 62 .................................... CTCGCGATGCGTGTGCGGACCGCACCGTGCCCGCGTGCTATGACGGATCTCCTCTTCGCGAC 1111752 36 100.0 54 .................................... ACATGAGGTCCAGTTCCAGAAGCCTGAGCGGAAGCGCAAGGCGCTCGACCCGGA 1111842 36 100.0 49 .................................... GGTCAAGGAAGTCTTCCCTTCACTGAAGGAAAAACTAGAGGATGACGAG 1111927 36 97.2 55 .......................A............ AACCTAACTTAGCATATGATGGTGGTTATAATTCAGATATTAACGCTAGCATATC 1112018 36 100.0 53 .................................... CAGACTGGGTAAGGGAGGACAGAGACGGGGAGGTGGAGACATGGGTCCTTAAT 1112107 36 100.0 55 .................................... GAGGGCAATGAGGAAGGAACAGCTGAGAGCTCGGGGTATCACCGAGCTAACACCG 1112198 36 100.0 52 .................................... TCGTAGGGGTAGTAGAAGAAGCATACGAAGGACTCATGGAATCCTGCAAAGA 1112286 36 100.0 56 .................................... CTAGCTGTGAAGGGAGTGTGTGTAGCGAGCCCCTGAGAAAAATAATCCGTTGGTTC 1112378 36 100.0 72 .................................... TGCTCGCCCGCTTCTTCCGCGAGACCCTGTATCATGACCGGGAAGAACGCGCTACCGCTTAGCGAGAAGAAC 1112486 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================== ================== 12 36 99.5 57 GTTTCATTACCCGTATTATTACGGGTTAATTGCGAG # Left flank : GTACCAGTACGGGCACAGGTCGATCGGGTCGCGTCCGGTGAGCGCCCTCAGCGCGTACTCCGAGGCGAGCGCGTGCGGGAGGCGCGTCCCGCGGCACTCAGGGGTTGATCAGGATCGGGGAGACGATCACGACCGCGGCGAGCGCGGGGACCGCCTACCACCCGTGCCGTCTCACGTCGGACACCCTTTCCCGCCGGCGACGATTGGGAGATCCCGGCCTCTTATCCGCGACGATCGCCCCGCGCCCCGATGGTGCGATCGAGACGTTACGAGTTACGTAACGATAAGACCCGTCGTCGGTGTCGACGTACATCTCTGTTGTGAACCGACCACTTACGCTTTGAACTTGGAGATCAACCTGCACTGATCATGAAAGAAATGGATGAATAACTTAACGTAAAGATTCTTACAGTGATTACAGATTAATTGCTAGCGAGGGAAGAGACTACGGCGAGAGGACCAAATAGATGGCGATTCAGGGGGCTAAAGAAGGTCACTAG # Right flank : GGGCGGGCGGTTCTCCCGGAGGATCACCCTTTACACTCCGAAACCACCGAGGAGATTCCCCACTCCTCACTCACTAGGAATTAGTATACCGGTCCTATTTAAAGATTACCCCGATTCCGTCGAACACTTAATCATACTAAAATCCGATACTAATTTGTTTCCCTTTAGTCAAAAGTTTAATATACAACGTCGGTAATGCTGAAAACTATAGTTTCTTCTGATGAGTAATTAATAAATTAACTTGATGAAGTAATAATTACAAAATGCTCATAAACTACTTTAGTACCTCGTGAGAACTGTAGTTCTTTGCTAACGGTTAGAATCGTTATCTCTTCGAATTGAAATAAGGTGCAAAACTTGCACTATTAAGGTGCATATTTTGGGCTTCAGGAAAAACCATTACCAGTATTGATAAGTATGAGTAAACATAGTAATACTTCATACTCAAGCGCTTCGAAACTACCGCTTCCTACGCGGAAGAACTAGCTTTTCTACCAAGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.97, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATTACCCGTATTATTACGGGTTAATTGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 1297217-1297617 **** Predicted by CRISPRDetect 2.4 *** >NC_003551.1 Methanopyrus kandleri AV19, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================= ================== 1297217 36 100.0 51 .................................... TCTGTTGTATTGGTATTGGGATGTTCCATGTGACTTTTACTCTGGCGTATG 1297304 36 100.0 51 .................................... AGACAAACTAGTAGCGTTCGCGAGATTCAAAGGAGATATCACGGTGTGTTC 1297391 36 100.0 61 .................................... TTTTGCAATCGATGATGCTTTTGCTAGAATTTCTTTCATTTCTGGGTCTAAATCTCTTAAT 1297488 36 100.0 58 .................................... CATGGACATAGACACGGACATAGACATGGACACGTCAACGGCTGTCGACATTCTAGCC 1297582 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================= ================== 5 36 100.0 56 GTTTCATTACCCGTGTTATTACGGGTTAATTGCGAG # Left flank : ACGATCCTGGCGTCCGCACTCTTCCACTTGGGTTCCACGACGGACTCGAAGTACCGGGCCAGGTACCCGATGTCGTCGCTCGCCTTACCCCGGATCAGGGGCTCACCCGCCGACGGTGTCGCGGTCAGGATCAGCCCCAGAACCAGCGGGACGACCGTCACTCGCGGCCCCGTGGTGACGACGTTTCGGGAGCTCATAAGTCCGTTTCCCTTTCCGGGTAGCAACGTGGGGTTTTCATCCGGGCCCGTAGGCCGTGCGTGGACCGAGCGTGCCGGTTGAGAGGTCGTGGAACCGGCGGCGTTCGCTTTTTTCATGAAATTAATTAGAGAGTCCCGATCCTGTACCGCCGTTGGTTATACTACAGACTAATCATGAAATGTTATAATATTGTTATAGAATAATGTTAATGCACTATCACTATCTGCATTATTACGGTTTAATTATAAGTTTCTAACAGTTGTAAAGTTAATAATCATCTATACAGCAGCGAGTACAGTGCA # Right flank : GGGCGGCCAGTTCTTCCGGAGGACCCACCTTTACACTATGAAACTACCGAGGGGATTCACTATCCCTTACCCACCAGAACTAGCACATCGGTCCTATTTAAAGATTGCCCCGATTTCGCTGAACACTTAATCATACTAAAATCCAATACTAATTCGTTTCCGTTTAACCGAAAGCCTTATATATAATATTGGTAATACCGAAAACCATAGCTTTCTCTTACGAGTAATTAATCTGTTAACTTGATGAAGTAATAACTGTACAGTACTCGTAAACCGCCTTAATACCTCATGAGAACTGTAATCCTTTACTAACAGTTAGAATTGTTATCCTTTCGAAGTGAAGTAAGGTGAAAATCTTGCACTGTTAAAGTGCACTAGTTAGGCTGCAGGAAAAACTATTACCAGTATTGATAAGTATGAGTAAAAGTGGTAATACTTCATACTCAAACCCTCCGGAACGACCGTTTCCTACGGGGAAGAACCCGCCTTTCTACCAAGTA # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.97, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATTACCCGTGTTATTACGGGTTAATTGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 1306914-1307701 **** Predicted by CRISPRDetect 2.4 *** >NC_003551.1 Methanopyrus kandleri AV19, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================== ================== 1306914 36 100.0 70 .................................... GGTAATGAAACTAGTATAATCTCCGTTAATTCATCTGCTACCTCTGGTAGTCTCTGTATTTCCGCAAACG 1307020 36 100.0 54 .................................... AACGCCTGGAGAAAAGCCTTCGGTAAACCCCTAACAGACACAGCCCTAAGACCC 1307110 36 100.0 60 .................................... AATACCAGAACGTCTCACCCGCATGGAACTTCGGCTTCAGCGGAGTACCACACTCACAGA 1307206 36 100.0 55 .................................... CGCTGTGGATAAACGATTGTCCACCGTGATACATAGCCGTCTAACCCTTCTTCGT 1307297 36 100.0 65 .................................... CTGTCTTCGCTTCTGGCCTTACTGTCTTCGTGAATGTTCCAAGCTCCAGGTAGTCAACTATCATC 1307398 36 100.0 54 .................................... TCTTGAGTAGGATACCGTTGATGATTGCCTCTCTCGTTTCCTTTGCCTCGTAGC 1307488 36 100.0 50 .................................... TGTGCTGGTGCTAAGTGAAAAGATTGCCACCCAATGCCCTAGATCTCTGA 1307574 36 94.4 56 .......................C...........T CCCACTACCGTCCTACATACTGCAGAGAGGTCCACCGTTGTTTTTATCCCATAACT 1307666 36 77.8 0 ....T......TT........A.C..A....A.G.. | ========== ====== ====== ====== ==================================== ====================================================================== ================== 9 36 96.9 58 CTCGCAATTAACCCGTAATAATATGGGTAATGAAAC # Left flank : TTACTTGGTGGAAATGCGGGTTCTTCCCCGTAGGAGACGGTCGTTCCGGGGCGCTTGAGTATGAAGTATTACCACTTCTACTCATACTTATCAATACTGGTAATGGTTTTTCCTGAAGCCCAAAATATGCACTTTAATAGTGCGAGTTTTGCATCTTATTTCAATTCGAAGAGATGACGATTCTAACCGTTAGCAAAGAATTATAGTTCTTACAAGATATCAAAGCTATCTGTAGGCACTATGTAATTATTACTTCATTAAGTTAACTCATTAATTACTCATCAGGAGAAACTATAACTTTCGGTATTACCGATGTTGTATATTAAACTTTTGACTAAAGGGAAACAGATTAGTATCGGATTTTAGTATGATTAAGTGTTCAGCGGAATCGGGGTAATCTTTAAATAGGACCGGTACGCCAGCCCTAGTGGGTAAGGGATAGGGAATCTCCTCGGTGGTTTCGGAGTGTAAAGGGTGATCCTCCGGAAGAACCGCCTGCC # Right flank : CATTCACAAACTCTTTAAAGTTATAAATTCAATCATTCTCCGATTAACCACTATTTTGCAATTAACCTACAACCTATAATAATATTTGTGGTTAACCTACGTACAATATAAACGACGACTATCGTTATCGGAGGCCATTCGTCGGCCGACCGCGACGCCGTTCCCGACTCTTTGAGGGAAGCGCGGGGACTGTCCGTGGCGTCCGCTTACACGTGGCGTACCCCGGGTCCGGATGGTGGTACCGCCCGTCGGCTCGCGCCGATCGCGTCGTCGGGACGGAAACGTTACGAATTACGTAACTAATGGCGGGGAAGGGGCGTCAGGCCGAGATCCACCGGCGGAGCGCCGCCGGCGTCGGCACCGGTAGCACCCACCACACCGGGAGCCTCCGACCCTTCGGCTCCCGCGGCTGCGGTTCCCGTTTCACTCCCTCAGCCCCCTCGCTCTCTCCCCCGTTCTTCCGCCCCTTCCCGGTGCCTCCGTCCGGTTTCTCCGGCTCC # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATTAACCCGTAATAATATGGGTAATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1363455-1362505 **** Predicted by CRISPRDetect 2.4 *** >NC_003551.1 Methanopyrus kandleri AV19, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 1363454 36 100.0 60 .................................... TTGTTGCTACTCTGGCCCCTCTCAGTACGCTGTCTCGTCCGTGCCCTGGCTGTGATACTT 1363358 36 100.0 63 .................................... GCTCCTTAAGGACATCGTCATAAAGTATCGCTTTCTCCACGTTGCTGAGGCCTAACGCGCCGG 1363259 36 100.0 51 .................................... AGGACGCGGAAGTGAAAGTCGTTATCCCCCTAAGAGTCGCAAACCGGACAC 1363172 36 100.0 53 .................................... GACTGATTCCCATAGTGCCGATAGCGCGGCGGCGAGCTCTGTGTCCACCGAGT 1363083 36 100.0 51 .................................... ACTGACCACTCCACTGGGAACGCCATGATATACGCCGTGTAACTGCAACCC 1362996 36 100.0 46 .................................... TACTGCTCCAATAGACCCTCCACAAGACCGAAGCCTTGTCCGCGGG 1362914 36 100.0 53 .................................... TCTATCCCGCACTCTACGGTCACCGACAACCAACATGGGATTACTCCGCAAAA 1362825 36 100.0 58 .................................... TAATCCTGCACCTTAAGTCTGCCTCTATGTTGTCCCAGATGCTCTTCCAACACACGTT 1362731 36 100.0 51 .................................... TCAATGACGTACCGAGCCATCGGTGATCCCGCTGGTGCTCCTGCCCTATAA 1362644 36 88.9 67 ...............T...............A.T.T GAGTAATGAAACCCGACTGCGCCAGGCGCGAGGTACTCGTCCCAGACGTTTTGTGCAACGCCTAAGT A [1362616] 1362540 36 91.7 0 ...............T.....C.C............ | ========== ====== ====== ====== ==================================== =================================================================== ================== 11 36 98.2 55 CTCGCAATTAACCCGCAATAATATGGGTAATGAAAC # Left flank : TCAACGTGATGGAAAGGCGGGTTTTTCTCCGTAGGAGACGGTGGTTCTGGGGCGCTTTAGTATTGAGTATTACTCTACTCACTCATACTTACTGATATCGCCTAGACTTTAGCTGCAGCCCAACTAATGCACTTTAATAGTGCAAATTCTGCACTTTACTTCGCTTCGAAGAGATAACGATCCTAACCGTTAGCAAAGAATTATGATTCCCATGTGGTATCAAAGCTGTCTACAGGCACTATGTAATTATTACTTCATCAAGTTAACTTATTAATTACTCATCAGAAGAAACTATGATCTTCGGTATTACCAATGTTGTATATTAAGCTTTCGACTGAATGGAAACGAATTAGTATTGGATTTTAGTATGATTAAGTGTTCAGAGGAATCGGGGTAATCTTTAAATAGGACCAGTACACTGGCTCTGGCGGGTGAGGGGTGGGGAATCTCTTCGGTGGTTTCGGAGTGTAAAGGGTGATCCTCCGGGAAAACCGCCCGCC # Right flank : ACGTTCCTTCAAGGCGACTGTGTATTTTCCAGAATCCTGTTCCCGCCCACGGGGCCTCTCGATGCTAGCTCGCATAGACAATGAAACGTCAACTTCTCGCGCCTCACACGTTGTACTCTTACGAACGGGCCCCAATCGCCCGCGGGCTGGGCTCGACCCCTAGACGGAAACATCAAACGGGACGTAGGAAACGCCGACACGGATAAGTGCCCGTGGACCTCACCCGCCGCCCGGGGATCCCCTGGGGTCCCCGATCATGAGGGGCAGGTACTACCCGAGCACCCGCTTCCTGAGGGCGACTCTGGGGAGGCTGACCGGGGACCACGGTCTGTCGGAGGAGCGGATCGAGGTGGAACCCGTCGACGTCGCGCTCGAGCCACGGCGGGACCGGGAGGAGGTACGGGAGCGTCGGGAGCAGCGCGGACAGGACGACGGACGCGTTCGACGGGACCGCGAGTAGGGTCCTCAGCACCCGGAGCAGGGTGTCGAGCGCGCCGAAG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.83, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATTAACCCGCAATAATATGGGTAATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //