Array 1 187186-188436 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQJL01000001.1 Cronobacter malonaticus strain S1 contig_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187186 29 100.0 32 ............................. TAACCGGCTTGCAGATAGTTTTTCTTCCATCC 187247 29 100.0 32 ............................. CTGACCACGTTGAGGCGGTGCTGCGCAAATCA 187308 29 100.0 32 ............................. GCACAGCTTTTATTAGTAAAAACCGCTCCCAA 187369 29 100.0 32 ............................. TGTTCGATATCTGCCGTGGCTGGATAAGCCGC 187430 29 100.0 32 ............................. GTCGCGGTAATGTGCGTCAGGTAAAATCTATT 187491 29 96.6 32 ..A.......................... TAAAATCGCCAGCTGATATTCGCGCTCGCGCG 187552 29 100.0 32 ............................. GATTTAGCGCGGCTTGCGGCGCGGGTCCTTTC 187613 29 100.0 32 ............................. GCTATTCTCTACTCTTACGAGCACGTTGGCGT 187674 29 100.0 32 ............................. CACATTTTCAAGACTTATGCACAAACTAAAAA 187735 29 100.0 32 ............................. ACCGCAGAGTCAATAAAGGCGGGGAATTATCC 187796 29 100.0 32 ............................. GACAGGGAGACCGAGAAAAAATTACGCAAACT 187857 29 100.0 32 ............................. CATACCCGGCTGCGTGATTATTTTGTTGATGC 187918 29 100.0 32 ............................. GTCATCGCCACGATATTCATCGGTGGCAAGGA 187979 29 100.0 32 ............................. CTTTAATTCGCTTGAGCGCACACTCATGCCGC 188040 29 100.0 32 ............................. GGCGTGTATTTCAGAGCCGGTTATTTGGCGTG 188101 29 100.0 32 ............................. AATGCATGCCACTCTTCAACTCCTACGGCCAG 188162 29 100.0 32 ............................. GCTTTTTCTTTGAGTGGGTCGCCCTTCGCCTT 188223 29 100.0 32 ............................. GCTGGATTCTGAGTAGCGTACAGACTCGTAAT 188284 29 100.0 32 ............................. TTCGGTACGCCAGTGCCGATAATTCGGTCATT 188345 29 100.0 33 ............................. TCGTCTGTATCCGTTTATCCGTGGCCACCTCAC 188407 29 82.8 0 ................A.AT......AA. | T [188423] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGACCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACACTGGATCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTTTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCGGGATTTCGCGCCTGGCACTCGCCGCCCCATTTCCCGCCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 215126-216070 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQJL01000001.1 Cronobacter malonaticus strain S1 contig_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215126 29 100.0 32 ............................. GCGACAGGTGAATTCTACAGGCCAGAGGCAGA 215187 29 100.0 32 ............................. GCAGATAGTTTGCCGAACGATTTGGAGAGGGA 215248 29 100.0 32 ............................. GGTGCTTTCCAGCTACACGAATCCCTTCTCGA 215309 29 100.0 32 ............................. TCACGCGTTTGCGCGCCGCCTGCAGATCGCAG 215370 29 100.0 32 ............................. TGCAATTCTCTCAGCGACTTATCGATAGGTTC 215431 29 100.0 32 ............................. AAATTCCTGGATAAGTGGCTTGATACCCCGCC 215492 29 100.0 32 ............................. CGCACAACGTAGCGCCAGTCGTGCAGGGCGAT 215553 29 100.0 32 ............................. CGCGATCTCCGCCTCAAGGAGCAGTTTTTGCA 215614 29 100.0 32 ............................. GCAAGGCCTCTAAAATTCCCCAACCCGCTACG 215675 29 100.0 32 ............................. CGAGCGAGTGCCGCTTTATCGCACTGTGGCCG 215736 29 100.0 33 ............................. GAGGGATAACCGAGACCGGAGAACGCGGAGGCG 215798 29 100.0 32 ............................. CCATTCACTATCCCGGATTCCTGGACAGTGGA 215859 29 100.0 32 ............................. GCATCGAGAACTTCCATTAACGCCTCACTGCC 215920 29 100.0 32 ............................. ATTCCGGGCGATAACGGCAGGGTGATTAGCAA 215981 29 100.0 32 ............................. TAATCAACGTATTGACGCTGAACATCTTCCAC 216042 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATTGCCAGGCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAAATGTCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //