Array 1 219309-219041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZRF01000015.1 Acinetobacter indicus strain KM7 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 219308 28 96.4 32 ...C........................ TATGAGCTGGCCAGGAAGTTTAGAGAGGAAGC 219248 28 100.0 32 ............................ TGCTCCAACTTCTCAATCGCTTCCATTGCTAA 219188 28 100.0 32 ............................ TAAAGAAATTGCAGATGGTGCAATCTACAAAG 219128 28 100.0 32 ............................ AAATCGAGGGCCAATACCGGCTTTTCGTCCCT 219068 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTTACTGCCATGTAGGCAGCTTAGAAA # Left flank : GCCATATAGGCAGCTTAGAAAAATTGAAGCATCTGAAAAGTGGCGCATGTATA # Right flank : CACCCAAAATAAAACCGGAGCATCGCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAACAGACTTCTTAACATCCAGGCGGTTTTTTCATGTACTTCTAATCGTTGGGTCAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATCAAAAATACTACGCGCGGTACGTGCGACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGCACACCTTCGACTTCTTCAATCGACGCCAGTTTTACAAATTCTTTATAGGTTCCCGGTGCCGGAAAACCCAGCGCACGAATCCGCTCGGCAATAACATCCAGCGCATTCCATTGCTCGGTATATTGGGTCATAAACATGGTGTGCAGGCTGTTAAACTGTGGCCCGGTCACGTTCCAGTGGAAATTATGGGTCATTAAATATAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGCCCTTCGACAATTTTGGCCCGGTTATCTTCAGAAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10530-11939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZRF01000071.1 Acinetobacter indicus strain KM7 contig_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10530 28 100.0 32 ............................ AATAGTCAATTTTAAAGTTACGCAATAAATCA 10590 28 100.0 32 ............................ TTGGGCTTGTCTCTATATTAACAAGTCAGACA 10650 28 100.0 32 ............................ ACCTGGGGCAAATCTGTTGCTGATAGTGCTCT 10710 28 100.0 32 ............................ GAATTATATCAGTGTAAATGCCGATGGTTCGA 10770 28 100.0 32 ............................ ATGCTATGGAAACTGATTTAAATGGTGCTCGT 10830 28 100.0 32 ............................ ATCCGAAATAATCAAACGATAGAAAGCATAAA 10890 28 100.0 32 ............................ ATGATCTATGAATTTGCAGAAGTACAAACCTA 10950 28 100.0 32 ............................ TTTTAGACCTGAAACTTTTGGTTATACACATC 11010 28 100.0 33 ............................ CATAACTGTGTAAGTGTGTCGGTAAGGTCGTAT 11071 28 100.0 32 ............................ TTGTTGAGGCCGAAATTAAGCGGTTAGCAGGA 11131 28 100.0 32 ............................ AGATAAAAAAGCTAAGTATCGCATTAGGAATG 11191 28 100.0 32 ............................ ACAAAAAATAATACTGATCAAACAAATAACTT 11251 28 100.0 32 ............................ TTCATTGTGTCTAGGATCGGGTCAAAAGCTAC 11311 28 100.0 32 ............................ AAACAGCGCTAAGTAATAGCACCATTGAGCGA 11371 28 100.0 33 ............................ ACCATCAGAACCTCCGTTTTGATCCATCTTGCC 11432 28 100.0 32 ............................ AGGGGTGTCAACGCTCTAAATCACTTGTCATG 11492 28 100.0 32 ............................ TTTATCCCATTCATAGCCAAAGCGTTTTTGAA 11552 28 100.0 32 ............................ GCTGACACGCAACAACTGAAAAGGATATACTT 11612 28 100.0 32 ............................ ATTACGTCATGCGGTGCATTTGCAGGACTATC 11672 28 100.0 32 ............................ TGAAAAGCGCAAGAGTCTGAAAGGACACCGCT 11732 28 100.0 32 ............................ TGTATAACCAGTTGGCACCTTTTCACAGCCAA 11792 28 100.0 32 ............................ GATACCAATAGAGCGTTTAGCAACGAGACGAG 11852 28 100.0 32 ............................ CAAGCCTATTGGCGATGGCGGGCATGATGGGT 11912 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AAAAATGGCTCAGCCAATATTTGGATTATGTGCATATTAGTTCTGTTAAAACTGTGCCATTAGATAAATTAACCGGTTATGCAGTTTATAAACGTAAGCAAGTGAAAAGTAGTGCGGAAAGACTCGCTCGGGCGGAAGCTCAAAAAGGCCGTTATGATTACGAAAATGCGTTGGCACATTATCGGAAGTTTATTAAAACAACGAACTTACCATTTATTAATATGCTGAGTGATAGTAGTCAGAATAAAGAGTTTATTCAGAAGCATGGATTTAAGTTATTTATTGAAAAACTTCCCGCTGAAAAATCTGAAACTCAGGTTTTTAGCACCTATGGTTTAAGTTCGGAAAGTGCTGTACCTGAATTTTAACCCAATATTTTTTTGATTCTTTAACAGATTAATAAAATCAATGAGTTATGATAGTGAGTTAAAACTTGGGTCTTTTATGGGTTTTGGGCTTTAACTTACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : AGGTGGCGACACTCGACATTGGCGCTTTATTGGTTCACTGCCATATAGGCAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //