Array 1 21539-21922 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSI01000010.1 Sulfolobus acidocaldarius strain NG05B_CO5_02 NG05B_CO5_02_scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 21539 24 100.0 36 ........................ TAAATTAGATATACGTACATGGGATTCACTAAGAAA 21599 24 100.0 36 ........................ CGATTGTTGTGATTGTTGTTCTTGCTTTTTAGCGTC 21659 24 100.0 37 ........................ CAACATAAGGACCTGGAGTGATCACGGGGAGCCCAGT 21720 24 100.0 36 ........................ GGGAGGGAGTTACAGTAATAATATCTACGGAACGGT 21780 24 100.0 36 ........................ CTTTCAATTGATGCTGGTGATGCTTGAGCTAAAATG 21840 24 100.0 35 ........................ TAGTACTATCTTTATATTCCTATATTTTCCTCCTA 21899 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 7 24 100.0 36 GTTTTAGTTTCTTGTCGTTATTAC # Left flank : TCTAGACATATGATTGGAGAGGATGAATTGAGGATCTATGTATTCTAAGTTTGAATGATTCCCATGACAGTCTCGTCGGATACAATTGCAATTAAGGTTGCAACAGACATCACAGCATCTGGTGTGATACTGACTTCCTCCTCGCTCTAAAGAGTGAGGGTTACCTAGGGCAGTTCACAGGTCTGTAGTTTATCACCTTCACTTTTATCACTTCATAGCTAGTGGGCTCAGAAGCCCGCTCCGCTCCACTCTTTCAGTGGTAGACCACTGGCTGAGCCTTCAGCCACTCAACCCCTATCCCTTTGGTGGAGTTGCCCTAACTCCACGCTCCTCGAGACTCAGGGATATGTACCAGGAAAGAGGGACACACACTGACTGACCCATGCTCTTACGGGCTTCCTCTTAATAACAACTTTTCTCTCGTAAGTAGAAACCTTTACCTCGCCATAAACGGCAAGGCTTTGTCATTCTCTCATCATTCTATTTTAAATAGTTACAGT # Right flank : TAGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTGTCGTTATTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 90019-89740 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSI01000006.1 Sulfolobus acidocaldarius strain NG05B_CO5_02 NG05B_CO5_02_scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 90018 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 89956 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 89895 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 89829 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 89765 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 130270-129516 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSI01000006.1 Sulfolobus acidocaldarius strain NG05B_CO5_02 NG05B_CO5_02_scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================= ================== 130269 25 100.0 71 ......................... NCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA 130173 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 130109 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 130042 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 129978 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 129916 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 129853 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 129792 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 129726 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 129664 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 129601 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 129540 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ======================================================================= ================== 12 25 99.7 41 GATGAATCCCAAAAGGGATTGAAAG # Left flank : ACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCATGCGACCAAAAAACCTAAACACAATTACTAGGACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACC # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6121-6623 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSI01000012.1 Sulfolobus acidocaldarius strain NG05B_CO5_02 NG05B_CO5_02_scaffold12, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 6121 24 100.0 36 ........................ ATCATTGGAATTGGGCTAGCCCTATTTTTCTTGATA 6181 24 100.0 35 ........................ AGTTGGTAGTGGGCAGATATCTAGCCCTGACCACT 6240 24 100.0 36 ........................ TGATGTCGAATACCGGAGTCAAGATGTTGATGAAAA 6300 24 100.0 37 ........................ AAATAACGAAGATTTAAGTGGTTTTGAACCAAGAGAA 6361 24 100.0 37 ........................ TGATCACATGTTTTATCGGTAGTACATAATGTAGAAA 6422 24 100.0 35 ........................ GAGGAGTTTGATAAACTTTTGGAATTTCTTGAGAG 6481 24 100.0 34 ........................ GAAATATAGCAAGAGTTCTGTGGTCGCTATATTA 6539 24 100.0 37 ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 6600 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 9 24 100.0 36 GTTTTAGTTTCTTGTCGTTATTAC # Left flank : TTCCAGTTCTTACCACCTCCAGAGGTAGATTTGGGTACAACGAGAATGCTATTGCGGGAACGAAGAACACAGTTATTATAGGTGTGATAATTAGTAAAGGCGTTACTTCACTTAAATGAGGGACTGCCGTCAACGCTTCAATAATGGCTATAACGGTGAGAAAAATGGGTACATACGCTGGAAGCAGCAAATACAGGAGAATCTTCGGATTACTCTTCACTATGTCAATTAGTCTCGTCAATTATCCTCATAAACTAAATCAAAATATTGAGAGAATAAAAACTTTTTCCTTATTTGTTACAGCAGAGTTGAAGGAGGGAACATTTAACGTTGCAGACTCCCCCTCCGCCGAGATTGGATCAATATGGTAATCAACTTTGTATGAGTACTGATTCTCATAACCACACAAGGGACACGTTATAACCCTACATAAGCGATAACATTTGGGACGTAAAATTTTGCTTCAAAATTAATATATGTGTCATGATATTTTACATGGA # Right flank : CTCAAAAATATAATGCGTAAGCTTAAATACCCAACGTTTTAGTTTCTGTCTCTTATACACATCTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTGTCGTTATTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 4344-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSI01000009.1 Sulfolobus acidocaldarius strain NG05B_CO5_02 NG05B_CO5_02_scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 4343 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 4281 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 4222 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 4162 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 4100 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 4040 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 3980 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 3922 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 3859 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 3801 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 3742 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 3682 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 3623 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 3565 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 3506 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 3446 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 3388 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 3326 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 3266 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 3208 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 3150 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 3087 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 3029 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 2969 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 2906 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 2845 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 2788 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 2728 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 2670 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 2608 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 2550 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 2490 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 2432 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 2369 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 2306 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 2245 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 2187 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 2126 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 2066 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 2004 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 1944 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 1885 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 1827 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 1767 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 1707 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 1648 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 1587 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 1528 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 1465 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 1406 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 1349 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 1291 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 1232 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 1172 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 1113 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 1055 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 994 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 933 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 874 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 815 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 757 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 698 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 639 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 580 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 518 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 458 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 398 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 339 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 280 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 219 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 156 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 95 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 36 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 73 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CTAGGAGGAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 16711-20495 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSI01000009.1 Sulfolobus acidocaldarius strain NG05B_CO5_02 NG05B_CO5_02_scaffold9, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 16711 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 16770 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 16828 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 16890 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 16951 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 17013 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 17075 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 17131 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 17194 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 17252 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 17313 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 17379 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 17439 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 17502 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 17561 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 17621 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 17680 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 17739 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 17799 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 17860 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 17921 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 17980 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 18038 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 18100 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 18159 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 18217 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 18276 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 18336 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 18395 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 18454 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 18513 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 18573 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 18633 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 18693 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 18753 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 18811 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 18869 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 18927 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 18986 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 19045 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 19106 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 19164 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 19223 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 19282 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 19341 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 19400 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 19460 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 19523 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 19582 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 19640 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 19697 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 19761 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 19819 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 19877 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 19935 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 19993 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 20052 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 20111 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 20172 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 20233 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 20293 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 20352 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 20412 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 20472 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 64 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : CTTAATTAAAGCGGCAAGCNGTAATAACGACAAGAAACTAAAACCTCGACCTCTTCTACTACTTCTGGTGGTGCACCCATGTAATAACGACAAGAAACTAAAACTTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTTGTAATAACGACAAGAAACTAAAACAAAACAATGTTTTAGTTTTACAGACATTATAAAATTGTAATAACGACAAGAAACTAAAACACTTCAAGAATGGAATACATTTGTTAAAAATTTGCTGTAATAACGACAAGAAACTAAAACGCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGCGTAATAACGACAAGAAACTAAAACATATAACAAAGCGCATTGCTGATACGTTACACAGAGTAATAACGACAAGAAACTAAAACTCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTTGTAATAACGACAAGAAACTAAAACNACACAGAGTAATAACGACAAGAAACTAAAACTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //