Array 1 323575-324700 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJW01000002.1 Salmonella enterica strain BCW_2011 NODE_2_length_449460_cov_3.29563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 323575 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 323636 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 323697 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 323758 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 323819 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 323880 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 323941 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 324002 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 324063 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 324124 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 324185 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 324246 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 324307 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 324368 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 324429 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 324490 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 324551 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 324612 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 324673 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 340959-343065 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJW01000002.1 Salmonella enterica strain BCW_2011 NODE_2_length_449460_cov_3.29563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 340959 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 341020 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 341081 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 341142 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 341204 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 341265 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 341326 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 341387 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 341448 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 341509 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 341570 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 341631 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 341692 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 341753 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 341814 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 341875 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 341937 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 341998 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 342060 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 342121 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 342182 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 342243 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 342304 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 342365 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 342426 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 342487 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 342548 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 342609 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 342670 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 342731 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 342792 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 342853 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 342914 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 342975 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 343036 29 89.7 0 A...........TC............... | A [343062] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //