Array 1 133937-135855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVF010000035.1 Erwinia amylovora strain Ea4-97 Ea_4-97_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 133937 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 133998 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 134059 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 134120 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 134181 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 134242 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 134303 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 134364 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 134425 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 134486 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 134547 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 134608 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 134669 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 134730 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 134791 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 134852 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 134913 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 134974 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 135035 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 135096 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 135157 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 135218 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 135279 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 135340 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 135401 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 135462 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 135523 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 135584 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 135645 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 135706 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 135767 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 135828 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.1 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVF010000039.1 Erwinia amylovora strain Ea4-97 Ea_4-97_contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30668-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVF010000039.1 Erwinia amylovora strain Ea4-97 Ea_4-97_contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30667 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 30606 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 30545 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 30484 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 30423 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 30362 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30301 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30239 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30178 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30117 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30056 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 29995 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 29934 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 29873 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 29812 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29751 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29690 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29628 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29567 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29506 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29445 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGAGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //