Array 1 747416-747631 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 747416 27 96.3 36 ...........G............... CTTTTGGCTGGAGTCCGGCTTGCCGTGCCGGTTCAC 747479 27 100.0 36 ........................... GGATGGCCAGGGTCCGGCTCTCGCCTGCCGGTACAC 747542 27 100.0 36 ........................... TGGTGGGCTGGGGCACGGCTTCCCGCGCCGCTTAAA 747605 27 96.3 0 ....A...................... | ========== ====== ====== ====== =========================== ==================================== ================== 4 27 98.2 36 GATGGCCTCAAACGCCGGCCGGGCTGT # Left flank : GGCGGGGGTTGCGGGCGAGGCAGGCGTCGGGGCCGATGCCGAGGCGTTCGGCGACGCCGGGGCGGTACCCCTCGATGAGGATGTCGGCGCGCTCCACCAGGTCCAGGACCCGGGCGGCGCCGTCCTCGGCCTTGAGGTCGACCAGGACGGAGCGCTTGTTGCGGTTGGTGAGGTCCAGGGCGGGGTCGATGCCGAGGCCGGCGCCGCCGGGGCGGTCGACGCGGACCACGTCGGCGCCGAGGTCGGCGAGGAGCATCGCGGCGAACGGGCCCGGGCCGATGCCCGCCAGTTCCACCACCCGGACGCCGTGCAGGGGGCCCGTCGTGGCCGTGTCCGTCATGTCTTCCTCGCTCCGTCGCGCGCCGACCTTGTGACACAACTGATGTAACAGTGTCGATGTTATGGACGGGGGGCCCGGGCCACAAGCCCCTGGAAAGCAAGCGCTCAGCTCAATTCCGGAGCTGCCCGGACGGCCTCAGCTCAATTCCGGGAGCTGCCCG # Right flank : TTGGTGGTCCTACGCTGGGTTGGTGACTGATGATTCGGTGGCCCCTCCCGTGCTGGTCAGTGCCTGTCTGCGGGGTGTTCCCTGTCGGTTCGACGGGCGGGACAAGGCAGTGCGGGGGGTTGACGAGGAGTTGGCGGGGCGGGAGGTGGTGGCGTTCTGTCCGGAGCAGGCGGGTGGGCTCGCTACGCCTCGGGCTGCTGCCGAGTTGGTGGGTGGGGACGGGTACGACGTGCTGGACGGGCGGGCCCGGGTGGTGGATGTGAACGGGGTGGATGTCACCGAGGCGTTCGTGGCGGGGGCGCACCGGGCGCTCAAGGCCGCGCGGCGGGCCGGGTGTGCGGAGGCGGTGCTGATGCCGCGGAGTCCCTCGTGCGGGCGGGGCGAGGTGTACGACGGGGAGTTCCGGGGGGTGCTGGTGCCCGGGGACGGGGTGACGGCGGCGCTGCTGGAGCGGAACGGGATCGCGGTGCGGCGGGCGCCCGGGGTCTGAGGCGGCCTCG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGGCCTCAAACGCCGGCCGGGCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1596683-1596288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1596682 29 100.0 33 ............................. CTCGCCCTGGCGGCGGGCGCTGGCTCCAGCTCC 1596620 29 100.0 32 ............................. GCTGGTCGGCGAGGGGTGACCTACCCGCAGCT 1596559 29 100.0 32 ............................. TTCGTGCTGGTCGCCAACACGGCTCCCACCGA 1596498 29 100.0 32 ............................. TGCAGGAGGAAGAGGAGGAGGTAGCCCCGGAG 1596437 29 100.0 32 ............................. GGGTCGGCCGTGCCGTCCCCGTCGCCGTCGAC 1596376 29 100.0 32 ............................. ACCACAGTGGTGACGACGACGGGCACGGCTGC 1596315 28 79.3 0 ..................AA..C.-.G.T | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.0 32 CTGCTCCCTGCACGCGCGGGGGTGGACCC # Left flank : CGGTCACGAGGGATACCTCTGGCCGGAACTCCTGGACCGCTGGCTCTTCTGAACGCGTCTTGGCTGGGCGGGGCTCGGACGTCCGGGGCGTGGGGCAGGGGCCCTTCTCCGCACTGAGGTTGTCTCGGCTCGGGGGCCGCGAGCAAGGCCCGGGCTCACGGGGCCGGGCCGCTGGACGCCGTGTCAGCTTTACCCGGGGCTGTGCTCCGGTCACCTTGCGGTTGTGGCGACTTGGCTGCGACGGGAACACTCTGTCCCGGCAAGCTCTTCTCGGCGGTACCTGGGGGGGGCTGGGGGAGAGCCCGGCTGGCTGCGGGCTTGGGCGTCGCCGGGGCTCGGTGCTCCTGCCTGCCGATGACTGGGATGGCCATGCGTGCAGTGCTCTGCGGGGAAAGCCCCGCAGCGGGGGAGGGATGCGGACGGCGGAGGCTAGGGTTGCGGACATGGCGAAGTTGGCGTGGAACGGCGACTTGCCAAGGTGAAGACGCAGGTCAGGGAGA # Right flank : TCCCGGGCTCTAGCGCCCTGGCCACGAGGAGCCTCGCCCATGGTCGCCCTTGAGCCCGCAGAGCCACGCCCGTAGCCCCGCCCTGAGACGGAGCCACGTCCTCGACCGACCTGAGCATCGACCGGTAGGAGGAGGCGAACTCGGCGCCACCGGCGAGGACTTCTGCGATACGGGTCGGGGGCCCTCACCTCGCAGCGCCCTCTCGCCGACCGTACGTACGGCGCACGATGCGGTCCGCTGGACGAAAAACGCAGGACGAGCCCGTCGAGACTGTTCCCGGACCTTCGCCAGCCCTGGTCAGAAGCGCCTAGCCACCCGCTAGCCTCGCCCCCCGCCTCTCCGGCCAGCGGTCACGCAACGCCCATAAAAACCTCTGCCACGTGCTCGCGGCAGGCAGCGCACCCGGAAGCTCCACCCTGCCCGGACCTGTCAAGCCGGAAGCACGACCCCTGGGGCAGCTCAGGCGAGGCCCCCGGCCAACCCTCGCGCCCCCCACCGCA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCTGCACGCGCGGGGGTGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 3000440-3000228 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3000439 29 100.0 32 ............................. TACTCGTACGACGAGGCCGCCCAGAAACTCCG 3000378 29 100.0 32 ............................. GCGGTCCTGGTCCGGGCGGTCGACATGCTCGA 3000317 29 100.0 32 ............................. GGCGCCCCCCTGTACCACCGACCGTCGGCGCT 3000256 29 89.7 0 ............CG.........A..... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Left flank : GGGTGCCCTTGTCGACCAGGTCTTGGAGGGCGGAGAGGGTTGCTGGGTGGTTGGGGGGATCTGGGCTGGGCTGTGGGGGAGGCGGGTTCGGTTGAGGAGGCGGCTGGGCTGGTGGTCGGGTGGTTGGCTGGGGCGACGGAGCCGGGGGTCAGGGTTGCCGCGGCGGTGGCCAGGGCTATGGACAGGGTTAAGGCGACGGTGCGGGTGGGGTGTTGGGGCATGGGGGCGTCTCCTGGTCGGGGAGGGGCGGGGTGCCTCTCGGGGACCAGAAGGTTTGGGGGTGGGCGGGGGGTTGACTGGGATTGTTATGGCGGGTGAGGGGGCTGGGGTGGCTTTTCAGGCCTCTCGCTGGGTTGCGGTGGGGGTTTTGGGGGAGGATGGGCGGGGCTCTTGATGGGGTCGAGAGGGAGAGCGATATGCCCCGTTCAGGGCAATTGCCGGAAGCTGGCAAGCTTGCAGAGATGGGCTGTGGGGGCGGCTAACGCCGCAGGTCATGGAGG # Right flank : AAGCGGTCGGCCGCGTGCCCCGTCTCGGAGTGCTCCCCGCCGAGGCGGCCCCCCACCCCCTTCGAGTGATCCCCCACCCCCCAAGTGCATCCCCCCACCCCCCGGGCAGCCTCCCTCAGGGAGTTCGTCCACCCGAGAGGAAGCACCGCGTGGGACTGTCACGGAAGTACGGAACCGCTATCACCGAAGGGCCGACCCCGGCCGATGTCGCCGGGCAGGCTGCCCTGCCCTACCCCGACGGGTGGGCGGCAGTTGCCTTCTCCGAGGAGTTGACGAGAGGGAAGGTGCTCACTCGGCCGCTCGCCGGGGAGGACGTCGTGCTGTACCGGCTCGGGACCGGTGCTCTGCGGGCCGTGAAGCCCTACTGTCCCCACCTCGGCGCGCACCTCGGGCTCGCCAAGGTCGAGGGGGAGGAGCTGGTCTGTCCCTTTCACCTCTTCGCGTTCGGGCCCGACGGGGCCTGTGTGCGGACCGGGTACGAGACGGCGCCACCCCGGTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3132728-3132939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 3132728 27 96.3 34 ...G....................... CCCCCTTCGCGGGGGCACGGTGCGCACCGCCCGA 3132789 27 100.0 34 ........................... CCAGGTCGCCATCCGGGGATTCGAGCGTGACGCC 3132850 27 100.0 34 ........................... CCGTGACCGGCCTCGGCGTGCAGATCGCCGTCGG 3132911 27 100.0 0 ........................... | GA [3132936] ========== ====== ====== ====== =========================== ================================== ================== 4 27 99.1 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : TGGACGACTGGCTGGCGATGAGCTTGCTCCGGGCGATGGACATGCCCCTGTCCCCGCGCGAGGTGCGGGTACTGAGCAGGGCCGCACAGGGGGATTCGGTGGCGGAGATCGCGCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAATTACATCGCTTCGGCTACGCGGAAGGTGGGGGCCAGGAATCGGGTGGACGCGATTCGGATCAGTCGGGCTGCGGGGTGGGTTTGAGGGAGAGGTGGGGCTGGTGGCGCTGGTTGGGGGACGGGGGTGGGGTTGGGGCATGGCGGGTGAGGTTGGGTCGGGTGACGCTGAGGAGTGGGTCGGGGTGTGAGTGACTGGGAGGGAGGGGTTCGCGGGAGATCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGCAGGCACCGAGGAGGGGATATGAGGTATTCGCCCGCATTGCCGGGATCCTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGGGTGAAACCCCAGGTCAGCGAGA # Right flank : CGCGCCAACCGTCAGCGCTCCTGAGCGTGCCCACCCCCCGCCCACGACGAGGTCGACGCGGTGCTCCGGCTTCCCACCGCCGAAGGCTGCCCCAGCCCCGCCGCCAGTTCCCGATACAAGGCTGACTCCCGAAGCAGCGCGGCGTGGGTTCCCAGGTAAGGGGTCGCCCCGTCCAGAAGCAGGACGCGCTGCCCAGGTTCAGGCGCCGGAAAGTGATGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCAAGCTCTGTCGCAGCCCGCGCCCCCGCGTCCAGGTGGGCCGTGGGCTCGTCCAAGAGCAGCAAAGGCGTAGGCGTGAGCCAGGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGAAGGGGTGAGGTGGTCCGGGCGAAGAGGGCGGGCCGAGTCAGACGCGAGAGGGGCCAGGGCGAAGGTGTCGATGGCTTCCGTGATGCGGGGGGCCGGGGCGTCCGGGGTTAGGTAGGTGAGGTTGTCCCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4008746-4007616 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 4008745 28 100.0 33 ............................ GACCCAGGCGTTCGGCCTGTGGGCCGAGGAGGT 4008684 28 100.0 33 ............................ ATCGTTCCGGCTACGAGTTCGGACTTCTTCATC 4008623 28 100.0 37 ............................ GCCGGTGTGCCTGGAGCCGAGCGACGAGGCATGGTGG 4008558 28 92.9 33 TC.......................... GGGGCGCATGACCAAAGCGTGGTGCAGGAAGGT 4008497 28 100.0 33 ............................ GATCTTCACCGTGGCCGGTGGGACGAGGCCGCC 4008436 28 100.0 33 ............................ CAGCCCGGCATGGAGCCCGTCCACAGCCTCGGC 4008375 28 100.0 33 ............................ GACGGACTGGTACCAGTTCCACACGCGGTCGCG 4008314 28 100.0 33 ............................ GCCAGCGGCATGGACACCTCCATGCTTCAGGGG 4008253 28 100.0 33 ............................ GGCGTTGCAGGTGTTCGACGAGCTTCAGGGCAC 4008192 28 100.0 33 ............................ GCCGAGAACGGCGGCGCCTATGCCGTCGGAGGC 4008131 28 100.0 33 ............................ GACGAGGGCGCCGCCGAGCTGCTCGCGGACGTC 4008070 28 100.0 33 ............................ GCTGGTGTAGAGACTCAGGGGAAGAACGTTGCG 4008009 28 100.0 33 ............................ GCAGCCCACCCCCGACGAGGACGCAGCCCGAGC 4007948 28 100.0 33 ............................ GCGCGAGAGGGCCCTCGCCGAACGTGAGGCCGC 4007887 28 100.0 33 ............................ GACGCCGCCGGGCTGGCTGCCGAGGCCGGTGCT 4007826 28 100.0 33 ............................ GTCACATTGCTTGGCCATCAGGACACCCCGCTC 4007765 28 96.4 33 ...............A............ GGCGGTGGCGCCCACGACGATCCCGAGCCTGGA 4007704 28 100.0 33 ............................ GTCGGCGTGCTCGCTGAACATGCGCAGGCCGTT 4007643 28 92.9 0 ........................G.T. | ========== ====== ====== ====== ============================ ===================================== ================== 19 28 99.1 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : GACACCGACGCCGACATCACCCGAGCCGTCGAGGCCGGCGCCACCGGCTACCTGCTGAAAGCCGAACGCCCCGAAGAACTCTTCACCGCCATCAGGGCTGCGGCTTCGGGGCGTACGGCGCTGTCGCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAACCCGAGCTGACGGCGAGGGAGCGGGACATTCTGCGGCACTTGACGCAAGGGCTGGGGAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCTACGGTGAAGACCCATTTGGGGCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGAGGCGGTTGTTGGGGTGAGGGGTGGGTGGCGGGGGTGGGTTCGTGGATTGGGGGGTGGGGTGGGTGGGGGGTGCGTAGGTTGGGGGTTGAGAGAGGGGGTGGTGATGAGTAAAGGGATAGCAAAGGCCGCCTGAAGGTGCAGGTGGGGAAGG # Right flank : GCCATGGATTTAGTCCAGCGCGTTGCGCCTCACCTCACCGCCCGCACCATCACCGTCAGCTGAGGCGAGGCCGGCGAAGGCTGGCTAGTACCGATGTCCTCGTAGCCCCACGAGCGGTACAGGGCATGCACCTTCCCGTCTCCTGCCGATGAGTTGACCATCAGAGTCACGTACCGGTCGTCGCTGGCGGCGAGAAGTTCGTCGTGGATGCGGCGTGCGGTACCTGTCCCGCGCCAAGCGGGTCGTACTCCGATCTCCTTGAGGGCGAGCGTCGGCTGCGCGGTGTACTCGTCGCCAGGGGCCGGGGTGGTGCGCTGCCAATACCGGTCGCCGCGCTCGATGCGGTTGGCGTACGCGTAGCCAACCGGCTTGCCCTCGGAGTAGGCGAGCACGGCGACGAAGCCGGGTTCGCGGCCGTGCCGGTCCAGGCGCTCGCCAAAGACGAGCGTCGTGTAATTCGGGAGGTGCAGGAGCGGGGCTCGCACCTCCGCGTAGACCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4733969-4733818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4733968 29 100.0 32 ............................. TGCGCGCAAATATGCCGCTCCACCCCACAACG 4733907 29 100.0 32 ............................. CACTGGGGCGCCTGGGCCCTGACGAGCGAGGC 4733846 29 93.1 0 ........................AC... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGGTCCCCGCGTACGCGGGGGTGGTCCC # Left flank : GAAGCCCCACACCGCGCCGCCCGCTACGACACGGGCAACGTCCGGAACCAAGCGAACTGCTCATGGGTGGGCATCCAGTGCTGGCCGCACCTCGGGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGCAGGTAGGTGGTGTCCTTCCAGAGGCGGCCGTGGAAGTCGGTGTGGCAGGCCCGGTCGGGGCAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGGGCCTCCGTGACTCGGCGGGGTCAGGAGGGTGAAACGAACGGAAGGGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGATTCGGCGATGAGACGCGTGGAGGGCCGGGGCCTGCTCCCTTGCCGCTGTTGCTCCATAGGATTGGGCGAGAACCCTAGGCGGAGCAGGTTGATTTGGGCTGAATGTCGATATCGGCGAAGCTTGCAGGAACCGGGCCTGCGGCGCCGTAAACCGGCTGGTCAGGGAGA # Right flank : GACCGGCAAGGCGACGCGTCCCGCGCATGCGTGTGGGCCCCTGCACACTCCAGGTCGGCCCCGCCAACACCCGGCCAGGCCCGTAAGCCCCCCAGTACACGCAATGGCCCCACCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGAGTCGGTGAGCTCGGGTCCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGATGGGGTGGCGGGGACGCCGACGGTCTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCTACGCGGGAGCGGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGTGGGAGTGCGCGCGGGCTGGCCAGCCGGTCGACCGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCCGCCGCGGTGGACGC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 5100560-5100832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5100560 29 100.0 32 ............................. GACGGGTGTCGAATTCTGGCAGTGGGTAACCC 5100621 29 100.0 32 ............................. CACGCCGACGACGCCGTGGAGCACATGATCTA 5100682 29 100.0 32 ............................. GTGCTCCGGGATTCCTCGATGGCGGCCACCCA 5100743 29 100.0 32 ............................. TCGTCCTGCCCATGGACGAGATGTGGCGGGCA 5100804 29 96.6 0 ..C.......................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CCCCGCGTCCTCCCCGTCCACCACAGAACCCCTCCCCGTAGACCGGTTTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGTTGGGCGTCTTGGGGTTGAGGGGGCGGGGGGGTGCGGGGGTGGTGTGGGCATCCAATACGGGGGTGGGGCTTCGGGGGGTGTGGGCAAGGGGCGTTCGGGTGCGTTCGGGTGCGACGCCGAGTGATTCGGGGGAGGAGGGGCGTGGCGGGGGTGGAGTTGACGCGAGGTGTTGCCCTGTTCCGATCCGCAGGAGCCACTGGGCGAGCGGGGCCGGCAGTTGGGGGCTTGGTTTCACTTGGGTGCGAGGTTGGTGGGGGCTGGGCTTGAGAAGGCGGGGTCAGGTCGGAGGGACTGGGGGAGGATGGGTGGGGCTGATGGATCGGGAGGGGGTTGGTATGCGGCTTACGCCTGAAAGGTCGCAATCGGTGAAGCTTGCACGGGTGGGTGGTGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : CGAGAAGCGCGCCCTCCACTCTGGATCGTCGGCGTGCTCCCCGTGCTCGCAGGGCCCCCCGCCAAGTCTCACTCCAGACAAGCCACCCCGGCCTCACCCAACCGTGGGCAGGCCAGCACACGCCCCAGCCCCCTCACGGCTCACAAACCCCACCCTCCACAGCCGCCCCCTCCGCCCCCGCGAAAAACCCCACAACCCGCCCCGCACACCCCCCACCAGCCATCCCCCCGTGTTCCCCGTCCCCCACCACCAACAACGTCCCCCCAGTCCGCGCCCGCATCGCCCGAGCCCAAGGCAACGGCGTGATCACCTCATCCCTGTGGGCGACCAGCAGCAAGGGCCCGCCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGTGGGCAAGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGTGCGGCGTTCGCCGTAGGCCGACCACTGTTCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 7160785-7160454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031742.1 Streptomyces koyangensis strain VK-A60T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7160784 28 100.0 33 ............................ CGCCGTTTTGCCGACCGGGGGGCCGCCCACGGC 7160723 28 100.0 33 ............................ GGTGGCCGAGATGATGCCGAGCGCGTCGTTGAT 7160662 28 100.0 33 ............................ GGTGTGCGCCGATCTCCCGTACGAGGCTGTACG 7160601 28 100.0 33 ............................ CTCGTGGCCGCGCACGGCAGCTGGTCCACTCCC 7160540 28 96.4 31 ......................C..... GACACTGACCGGTGCTCTGTGTCTGGCTGAG 7160481 28 75.0 0 .............G.AC..A...GG.C. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.2 33 GGACAGCCCACGCACGTGGGGGTACGAC # Left flank : GCCACAGCCCAAGAACTGAAGCCTCGCCACGATAAGCACCGTTGCAGTACTAACTCGAACCGGCACCAGACGAAGCGAGTCGCCGTATCACGCTGCCATTCTTCTTCCTCGCGCCGACCGGCGTCTGCATGTCGGCGCGGGCAACTCCCAGGCGTGGACCATTACCTGAGGCACCCTGACGGAAGGCGCAGGGCCCAGAACTCAGGGAGGCCGGAGGCACCGGGCATCCCTCATCGACGGAAACGGCAACGCCGGCAGAGGCGTCTGCGTCGTTGCCCACGCCCCGCCAGATGGGCCCGTCCGCCGTACTTGTGTCCTTCGGCGGAGCGCTGGACATCGATGAAGTTTCCCCGGCCGCACGTGTGCGACGAGTCGAACCAGACGGCCACAGCATCGACGAAAAAGTCTATGCTCCCAGAACCGAGCGACCACAAGCCGTCGATGCGGACACAACGCGGACACTGAACGTCCTCGCGTTGCAAAGCACCAGCTCGCGAAGG # Right flank : AGCAGGCGAGGCCTAACAACTCCCCGCTCGTAAGGGCAAGGCCGGTCCACTCCTCGCCGCGGAACTAGAAGCTCAAGGCAGTCCTCATACGCAAAAACACGCTATTGGAAGTTGCATCTCGATTTCGCGGGAGATTCGCATCCCCTTTTCGCAGCCATACCACCCGAACCCAGTAGGACAGCAGGCCATCGCGCTATTGGCGCGAAATCTCGATGCAACTAATCACGAAACTCTGATGCAACTTTCCAGTTCCGACTTGACACCCCTACCGTCTCACCCAGCACTGACAATCGGCCTTGAGAGTGGAGAGGCAAGGTTGAGGAGGGAGAACAACCAGAAGTCCGTGGAAGCGCACGTGAAGCGTGCGGCCGGCCGAGGTGACCGCCTCCGCCCGGCAGAGGCGAGCGGACAGCCGCCCGCGGTCAGGACCAGGTGATCACAGGCGCCTGCCCGCTCGCTGCCCCGGGGCCTGTCAGGCCACGGTGGCTATGGAGCGGCCA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACAGCCCACGCACGTGGGGGTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //