Array 1 1045037-1047078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022139.1 Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1045037 29 100.0 32 ............................. AAAAACCTGCGACCACGGAATATCCAAATTTC 1045098 29 100.0 32 ............................. AATTAGAAATGATCGATGTAGCCAGGAACGGA 1045159 29 100.0 32 ............................. CAGGCCTAACTCAACGGCCCGGGCGAAATTTT 1045220 29 100.0 32 ............................. CCTTCATGTTCGATGATAACTGTTTTATTACT 1045281 29 96.6 32 ............................T CAGGTACTCTATCCTGATAATGTTCTTCAGCC 1045342 29 100.0 32 ............................. GAATTACGAGAGAGAAATGAAAACTTTAGTTA 1045403 29 100.0 32 ............................. TTAACTGCGTCAATATCGGTGATGATAACTCT 1045464 29 100.0 32 ............................. CGGTCGATGTCGCGTCGTCCCCGTACACCGCC 1045525 29 96.6 32 ............................C AGTGCCGGGCCAACTGGCAGGGATATCAAATA 1045586 29 100.0 32 ............................. GGCGACGGCGTAGAGCTTGCCTTGGGTACGCC 1045647 29 100.0 32 ............................. CAAAACCACCACGTGAAACAACCTTGTCCTGA 1045708 29 100.0 32 ............................. GGACTAAATCGCAGATACTGCTGTCCAGAGCA 1045769 29 100.0 32 ............................. ACACTCCCATTTGAAGAACAGCGCCATATGAC 1045830 29 100.0 32 ............................. TTCCCGCTGTTTATATCCGGTGTATTGCAGGA 1045891 29 100.0 32 ............................. ACACTCCCATTTGAAGAACAGCGCCATATGAC 1045952 29 100.0 32 ............................. CTAAACATCGTTATAAGCTAAAACCTCCCCGT 1046013 29 100.0 33 ............................. AATTTTCAGCAGAAAAACGTATATGAAATCTAC 1046075 29 100.0 32 ............................. GTGTTTAGGGAGGTTAGGGATTCTCTTGGAAT 1046136 29 100.0 32 ............................. GGAACCGTCCTCGGGGAGATGTTCGTTATCGT 1046197 29 100.0 32 ............................. ACCTATACCGCCAGCGAACTGGCTATTGGGCT 1046258 29 100.0 32 ............................. CGGTAACGCAAATTCTTGGTTCGACCTTGTAC 1046319 29 100.0 32 ............................. AAAAACTGACGTGGTTTGAACGCAGGGTGCTG 1046380 29 96.6 32 ............................A GTCATTCCCGTTTCTGGAAATCGTGGGGGAAC 1046441 29 100.0 32 ............................. TGATTCGCCGTAGTATGTTAGCCTCAACGTAA 1046502 29 100.0 32 ............................. TTTTCGCGCCGTCCTGAATTGAAATGGAAACA 1046563 29 100.0 32 ............................. ATGCGCCTGTCTTTTTTCCACTTCAGGCTCGG 1046624 29 100.0 32 ............................. AAAACATATAGAAATGAGCGTTTCATGCATTA 1046685 29 100.0 32 ............................. TTTACCCGCCGCGAGGTTCTCTTTGGTATTGA 1046746 29 100.0 32 ............................. TTGACCGGACGCGCGGTTATTCAACTAACCGT 1046807 29 100.0 32 ............................. TGTCCGATTATTTTATCGCTATTTGTGAAACT 1046868 29 100.0 32 ............................. GCATCAGCGGTCATGACTACAGGTTCAGTCCT 1046929 29 96.6 32 ...........A................. ACAGGGGGAACCGGGAGCCTCCGCAAGCTTGA 1046990 29 96.6 32 ............................C CACGAAGGGTCCGGTTGTTTTTGGATGCCCCC 1047051 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATCGAGGCGCTGGACGAACTGTTAGCCACGTTGAGCGATGATAAAACGCGCGTAATTGCATTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCCATGCGAATTTCGTTGAGTGTATAAAAGCACTGATAAATTTTTCCATTGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTACTCTATGAAATTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTCATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCAGTGTACCAGTAATGGCTTGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGGACTTTTATACAGGAGAAGACCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGACCTGGAGCTGATAAATCGTTGAGGGCCAAACCAGGATTAAGCCTGTTGGTCCAGGATGAATCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATACAAAATGCGTTGACGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATCACCAGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCGCGGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1055126-1055703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022139.1 Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1055126 29 100.0 32 ............................. ATCTTGCGCCAATGCTTTTTTACTCTTCCCTT 1055187 29 100.0 32 ............................. GAAACAACTACCGGTTAATTGTGGCAATTGCT 1055248 29 100.0 32 ............................. TTACGAATGAGAACCCATTTAGAGGTCGAATC 1055309 29 100.0 32 ............................. AGGATATTTAAATATGGTAACTAAAATATATT 1055370 29 100.0 32 ............................. CGCAAACACTCGCAGAGCTGCTTGGTATCACA 1055431 29 100.0 32 ............................. CGACGAGAAGAGAAAACAGATTTTAACGGCCC 1055492 29 100.0 32 ............................. GACATGCAAGCAGACGTCGTGAAAAAACTCAA 1055553 29 100.0 32 ............................. CAGATAACGCTCAGATACCACCAAAGCAGGTA 1055614 29 96.6 32 ............................C AGGGGGATATGATTATTACATGGATTGATTCA 1055675 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGTAGATAGAGAAGCTACAAAGATTTTAGTGAATATCATGTAAGAACTTCTCTATGCAACAGCGTTAGATTAATACCACTTATCCAACCAATCCAAAACGCTTACTGTAGTAGCTAGCTTCTCCGGTATCAGATACCAACACAATCTGTCCGGAAGGACGATGGTGACGTTTCCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGTTGTCCATCAATGTCTTTTCTGGCGAGGTAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCCCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGTAGCCACCGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCGTGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTACCTTTGGGGGAGGACGGATTGCGTCCCGGATTGGTGCTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //