Array 1 193808-193375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASLM010000003.1 Enterococcus faecalis strain 10702727 Contig_4_157.866_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 193807 37 97.3 29 ....................................G AATTGTTTATTGAAATCATTTCAGTATAT 193741 37 100.0 29 ..................................... TTTACCATTTCCATAAATCAGCGAACAGC 193675 37 97.3 29 ....................................C CCACCATCAGCAAACATTTGCAAATTCAT 193609 37 100.0 29 ..................................... TTTCTCTTCATATATAAATTCATTCTTGG 193543 37 97.3 29 ....................................T TCAATTATTAAACAATTTTCCATTAGAAA 193477 37 94.6 29 ....................G...............G ATGGCCGTCACACCAATGCTGCACGATTA 193411 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.1 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACATTACAAGAAACCTGGGCAATGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATACTTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCTTGTTTTATAGTCATGTTGTTTAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAGCTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 70644-72018 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASLM010000042.1 Enterococcus faecalis strain 10702727 Contig_60_192.329_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 70644 37 97.3 29 ....................................C ACCTTTTGGCGTTGCATTGGGACGTCTCC 70710 37 97.3 29 ....................................A TCTTCACCATTGAAAGCACCTTCTTTGTA 70776 37 97.3 29 ....................................A AATGAAGTCAGAACGTGAACGACTTGAAA 70842 37 100.0 29 ..................................... TTTACAATATGAACAACGAATTAACCTAT 70908 37 100.0 29 ..................................... CGATATAAGCATTTTGTATCGTCCAATGT 70974 37 100.0 29 ..................................... CTTTACCTTCTGTGAAAAATGGTTCCTGT 71040 37 97.3 29 ....................................G AACAACGTATAAGTTCGTATGTAGGGCTT 71106 37 100.0 29 ..................................... GCGAATCTTTGGCATTCTATCACGAAGCT 71172 37 97.3 29 ....................................A GTTAGAGCCGCTTAGATTCTTAGAGAAGC 71238 37 97.3 29 ....................................A CGTGCAACATTATACGCTGCCGACTTATT 71304 37 97.3 29 ....................................G ACATGGTAGCGATGAACGATTGCAACAGA 71370 37 100.0 29 ..................................... AATACAACTTTCTCACCATCACGATAGTT 71436 37 97.3 29 ....................................A TCTTCACCATTGAAAGCACCTTCTTTGTA 71502 37 97.3 29 ....................................A AATGAAGTCAGAACGTGAACGACTTGAAA 71568 37 100.0 29 ..................................... TCTTAATCTTCATCGCTTTCACCTAATGT 71634 37 100.0 29 ..................................... CGTAAAAATTTATATCGCATTGAAAATAG 71700 37 97.3 29 ....................................G CAATATCTTGGTACGTCATTCAAGGTTGC 71766 37 100.0 29 ..................................... TGCGGTATTATTCGTAGGTTTGCTTTTTT 71832 35 81.1 114 ......................--.TT.CG......G ATATGAATGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [71866] 71982 37 67.6 0 A...........C...A....TT.CTT...G..T.GA | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 20 37 96.1 34 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTAACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : AGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGATACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTTCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATCCGCTCCCCGTTTCACCACAGGCATATTCGTAATAGCTAAAATGAAGAGGGCTAAGAAGAAAAGTGCCAGGATTCGGAAAGTAAACCATTCTTTAAAGAGTGTGTCTAATTGTAAACCACTTTCCAACAGAATAATTAAGGGCATATGCAAGAGATAAGGGTAAAGGGTATCTTTTCCTAGGGCGCTTAAAGGTAACTTTCGTTTCGGCAATAATG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //