Array 1 63534-65195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUS010000040.1 Parabacteroides distasonis strain 1001099B_141217_F9 NODE_135_length_101039_cov_35.817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 63534 47 68.1 29 AAG..T.AG.AT...T...A...........C....CAA.......T CTTGGGGCGAATGGTGACGGTTGGCTTGC A [63545] 63611 47 95.7 30 ...........T...T............................... TCTCCTACCAAGGTGATACCCCTGATCAGC 63688 47 100.0 29 ............................................... GCTTCGATGGCACGTTCGGCCCAAAGGTT 63764 47 100.0 30 ............................................... TGGCTTTGATTTAGTACTAAATGATCAAAC 63841 47 100.0 30 ............................................... TTAATATATTTGTCAAAACTGCCATCACTC 63918 47 100.0 30 ............................................... CAAACGAGAAAGATCTAAATTGAGTTTTGT 63995 47 100.0 29 ............................................... GTTGACAAATATACTGAAATATTGATTAT 64071 47 100.0 30 ............................................... AACGCCTGTTGAAATATCACATTAGGTAAT 64148 47 100.0 30 ............................................... GGAACTATAAGCTGGATACGATCCGCAAGA 64225 47 100.0 30 ............................................... CTTTGGTAATGATAGCGTAATAATGCTGAT 64302 47 100.0 30 ............................................... TATTGTTTATTTTATAGTTGTTGTATATCT 64379 47 100.0 30 ............................................... AAAAGAAAAAATGAAGCTCCTCCGGGAGCT 64456 47 100.0 30 ............................................... GACAGGACAAAATTTCTTTTCCCATACGGA 64533 47 100.0 30 ............................................... ATTAACTCTATCGAAGGATGCTACAAAGGC 64610 47 100.0 30 ............................................... CACCTACAGCACCCGAAATGCCTTGAACAT 64687 47 100.0 30 ............................................... TTCGGCTGTAAATGAGTTGCTTAGGCTTAC 64764 47 100.0 30 ............................................... AGTCTTCTGCATTAGGTCAAGCACGCAAAT 64841 47 100.0 30 ............................................... TTGAAGGTACACGCCTTGCAGTTCATGAGA 64918 47 100.0 30 ............................................... GCTATAAACGCAACCGTCGTGTCCTTACGT 64995 47 100.0 30 ............................................... ACAAACGCTTGGGACTATCGAGAAGATGGT 65072 47 100.0 30 ............................................... CCGTGTACGATATACATGCTACTACTGTTA 65149 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 22 47 98.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Left flank : ACTCGTGGGGGATTCGTCTGGGGTTGTCGTACAAGCAAGTTCAAGAGAATGCGTCGCTTTCCGGAGTGCTCACAGTTAAGCACCTCATTTATCAGCTCATCCTGTTTATCATATAGCCATTCGTTTTCCTTGGTCGAGAAATGGCTACAGACCCATAACGCTTGATAACTAACGGCATCATCCGGATCGAATATCAGATCGTATAGCTCTGCTTTCCGTTCTTGGTTCCCTTGTACATAAAATAATATCTCATGGATATCCTCTATATGACAGCGGCTTGATAGTCTCTCTTTTAGGTCCATTCTCAATCTTTGTTGTTGTCTCTTTATCTTTTCTGCCGTAAAGTTATAGTCTTTTTAGCAAAGTTTCCTTAGTTCGCTTACTTTTGTGCCCCATTGATAAAAGAATGGATAGATATGCGATATATGAATTTATTAAATGATTTAACAATTGATTGTAAAAATAACGGAGGGTGTTACCGAGTAAAGGATCAGTTGAAG # Right flank : CTTAATCTGTATTATATGCTGTATATCAACTAGATGATAGAATGGTTAGAAAATAAAAAAGAAAAGTTTCCAATGTAATAAATCCCGTTTTATGACGGGATTTATTATTTCTAGAAAAGCTCTAATTGTTGGCCGGGTGTATTAGGAGGTTGTACTTTTTTCCCATAGAACAACTCAATATTCCCAAATTGTTTGTCTGTAATGCACATTATTCCTATTTGCCCGTGTTCTGGTAAAAATGATTTTACTCGTTTTATGTGTACTTCTGCATTTTCTTGGCTGGCGCAATGTCGCACATAAATAGAGAACTGAAACATGGTAAAGCCATCACGCTGCAGATTCTTACGGAAATCACTATAAGCTTTCTTTTCTTTTTTTGTTTCCGTAGGCAAGTCAAATAATACCAACACCCACATAATACGATATTCGCTAAATCGATCCATGATTATTACCGTTCTGGATACACGATTCTTCGTTGCTCTCCACTGAAACATTTGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 87397-89101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUS010000078.1 Parabacteroides distasonis strain 1001099B_141217_F9 NODE_245_length_107661_cov_30.2457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 87397 33 97.0 36 ................................A TTTTATCATTTGAATATTGATATTGTTTATTTCTTT 87466 33 100.0 34 ................................. GCCCGTTGTAGTACGGGCTGTACTTTTCCACGAT 87533 33 97.0 36 ................................C AATCCGTACAGGAGAAGATCTTGCCAAGCGTTGAGA 87602 33 97.0 34 ................................C CTTCGCCAACCAATTCTTTGCGGCGTTCTTTAAG 87669 33 97.0 34 ................................G GCAAGGAACAGCCGGTAGATGGAGTGGCGGTGAT 87736 33 97.0 34 ................................A CTCAGGCTGCTATTATAGGAGATTCGTGATAGGA 87803 33 97.0 37 ................................A TCTTTTTAGGATTATTATTTACCACATTCACACAGGC 87873 33 97.0 34 ................................C TTATAGCTCCGTGTTTAATTTTGGTAACGACATT 87940 33 97.0 36 ................................G AAGAATTAAAAGAAGATCTGCTTGAACGGGCTAAAA 88009 33 100.0 33 ................................. GCCATTTCCCATTCGGCACCTGCTATAAATCCC 88075 33 97.0 34 ................................C CCCGTATGTTCGACGATGCGACGATTAAAGAGTA 88142 33 100.0 32 ................................. TGACTTATCCATAACAGGCATTTACCTTGCTC 88207 33 97.0 32 ................................C GAACATTTTAGTCATTTGGGTAGCATCTAGAT 88272 33 100.0 32 ................................. ATCGGTAGACAAGAGGTTGTATATAGTAAAAG 88337 33 100.0 32 ................................. TTTCTACGAGGCTTGGCATCAAAGAAGGCGTT 88402 33 100.0 33 ................................. CCCAATAAAAAGGTGGCGTGCCGTACGATAGGC 88468 33 100.0 34 ................................. TCTTCATCGCCGCCAAGGGGCTATTCACCGAATG 88535 33 100.0 35 ................................. GTCTTTAAGAAAGCCTTAGCCGAGGCCGTTGGTTT 88603 33 100.0 34 ................................. TTGGTTCCGGTACGTGTAAATGTTGGGATATGGT 88670 33 100.0 33 ................................. ATGTTAAAGAATTCAAACTTCTACTTGTTTCCA 88736 33 97.0 36 ................................A TGGCATGCGGAGGTATCCATATGTTGAAAAGGGAGA 88805 33 100.0 33 ................................. TTATCGTTTATTAGTAAGAATATGGCCAAGATC 88871 33 97.0 33 ................................C AATCATTCGGGTGTACCTCCTCTATGTATGAGA 88937 33 97.0 34 ................................C CGCCAAGAGAGCCAAAGACTCGCAGGTTCCGGAG 89004 33 100.0 32 ................................. TGACAGGAGAGTTCTCAAGCACTTCGTATCAG 89069 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 26 33 98.5 34 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGATTATGCATATTCTTGTGACTTATGATGTGGATACTACGAGCAAAGAAGGAGCTCGCCGCCTACGACATGTGGCTAAGGCTTGCATAGATTATGGCCAAAGGGTACAGAATTCTGTCTTTGAGTGTGAGGTGACAGAAGCACAATATTGTCTCTTGATTGAACGAATCAAGCGTATTATTGATATGTCTCTTGATAGCGTTAGATTTTATATTCTCAATAAAAACGAGAATAAAAGGGTAAAAGTGATAGGTGTTGAAACTGCTTACAAAGTTAATAATGCTCTTATCATATAATTTATGCGAATGTAGAGTATTACGAAAAAAGTAGTATTTTCGCACCCCTTAATAATTAGCAGATTAACCCGTCTTTAAGGCGATTGCAGCCATTAAGCTGAAATAAAAATGAGAATTCGCATATTAATAGGTCTAATTTATTGACTTATAATATGTAACTTTGCACACT # Right flank : TTTTGTAAAGCGCAAGCTTTTTCATAAAAGATATACTTACGTGATGAAGTATATCTTCTATGGGACTTGAAGTGTTCTTCTGCGACGAAGGGATTAGTACTTCGTAAAAATAACTTTTTAAAGTCACTGACACTGACATATAATTTCGCTTAGTTATTTCTGCAAAAATCATTCATATGTAAACAAGTTTCGTATATTCGCGACCTTATAATAGTTTAAATATGGCAGAGGAACTACGGATTAAAAATGGTGATAAACAGGAAATGTATGAGACGTTGCTCCCGCAAATCGCCTCATTGGTAGGTAACGAGACCGACCTAATCGCTAACATGGCGAACGTCGCCGCAGCACTCAAGCAAACTTTCGGTTTCTTTTGGGTGGGTTTCTACCGGGTCATAGACAATCAGTTGGTATTAGCGCCTTTTCAAGGCCCTATCGCCTGTACACGAATCAAATACGGAAAAGGGGTATGCGGCACGGCTTGGAAGGAGACCCGTACG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //