Array 1 2432-389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZZ01000005.1 Thermoactinospora rubra strain YIM 77501 contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2431 29 100.0 32 ............................. ATTAACGCCGAAATCGCGTGCATGGGTGGAAA 2370 29 100.0 32 ............................. ACGCTGCCGGTCAGCTTGTCCAGGCCGTCCCG 2309 29 100.0 32 ............................. ACCTGGTCGCCGGTCTTGAGGTCGCCCATGGT 2248 29 100.0 32 ............................. GGCGACGACGGCGCAGGCCTGGTCGTGGGTGA 2187 29 100.0 32 ............................. ACCTACGGCGGCAGCGACGCCGAACGGTGGGC 2126 29 100.0 32 ............................. GGCGGCGACATCCCCCACGGCGACTACTTGGG 2065 29 100.0 32 ............................. AAGGCGCGCCGATGAAGACCAAAACCCGGCGC 2004 29 100.0 32 ............................. TGGGGCCGGCCTCGTCGAGCAGGCGGTGGGCC 1943 29 100.0 32 ............................. CTCATCGACAAGTGCAATCCAGCCGCGCTCGT 1882 29 100.0 32 ............................. CCGTCGACCACCTCGAACCGGGCGCCCTCTCC 1821 29 100.0 32 ............................. GGCTTCGCCAAGCTCGTCCACCCCGGCACCCG 1760 29 100.0 32 ............................. GAGCGTTGCTTCGTCACGTGTAAGGTCCTCCA 1699 29 100.0 32 ............................. GGGCGCCGTCGCCTGCAAACGCGGTTTGCGCC 1638 29 100.0 32 ............................. CATGACCGTCGAAGACGTTTGCACCCGGCTGC 1577 29 100.0 32 ............................. GAGTTGGAGCCGGCGGTGCGCAGGAGACTGCG 1516 29 100.0 32 ............................. GGCCTCATCAACGGCATCAAGGCCAAAGCGCA 1455 29 100.0 32 ............................. CACGGGGGTGACGACGCCCTTGCTGGACATGG 1394 29 100.0 32 ............................. TACCGAGGCCACGTCCTCGTCACCAACCGCAA 1333 29 100.0 32 ............................. CAGGTCAACGCCGCGTGGGAGTGGCTGCAGAA 1272 29 100.0 32 ............................. TTCGGCGCCCGCTACGCCCGCGAGACCGGCAA 1211 29 96.6 32 ......T...................... GCACCAAGAAGATCCGCTCCGCCGCCGAGGTG 1150 29 100.0 32 ............................. AGCACCCTCAAGGACCACACTTGACGTCCTCC 1089 29 100.0 32 ............................. GCGCTGTCCGATCTGGGCCTGCGCGAGGTATC 1028 29 100.0 33 ............................. CGGGGCGCCGTACTGCGGTCCGTAGGGTCCCTC 966 29 100.0 32 ............................. CCATAGTTGGCGGGTTCGCTGCCGCCGGCGAC 905 29 100.0 32 ............................. GGGTTGACGTGCGTCAGGAGATCCACGGCCGG 844 29 100.0 32 ............................. GGTGTCGTCTCCGGATCGGGCTCGTGGGTTTG 783 29 96.6 32 ............................G GCTCAGGGCGCCCTCGGCGGGATGGTTGCGGG 722 29 100.0 32 ............................. CGGCTCGCCCGCCGCGGGCTGGAGATCCGCAT 661 29 100.0 32 ............................. CGTGACTGATTCGTTACAGATTCCGAAATTCT 600 29 100.0 32 ............................. TGCAACCCGGAGATCGTCTTGCCGCACGTCAG 539 29 100.0 32 ............................. CGCCGCCGAACTTGCCGCGGGTCTCCTTCGCG 478 29 100.0 32 ............................. GTTGCCCGCAAGCAGGCGCAGATGGACGCCCT 417 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.8 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TATTCACCCAGCCGCGACCATAGCCACCACAGCGAACCTCTGACCTGGCGAGCTATCCCAACCCCAACGGCGAAACGGGCATCAACTCCCGAAACGCACTCTAAGGAAGGTGGGTCGCTTTTCATGGGTCCGGTCCTCTCGTTCATATGACGTCTACTGTGGGGGCACAGTAACACGGGTAAGCCTGAACGTGAGGATGCCCACTGTCAGCGGGTGCTACAGGCCGACACCTGGCAACCCACCAAGCCAGCGAACGTTTTCCGTTGCAGCGCTGGCGATGCGTCTTGCATGGTCATCTGACCGACGAGTTCTCCCCCATGGAGAACTACAAGGCTCTGGACTGCTGACTGTGATGGCGAGGCGTACAGTGGAGAAGTCATGGTGCCGTTGAGGGTAGAAGCTGCACGAAGGCGAGAAGATTTGCAGCGTCCGAAATGTCTGAGTTGTTGAAACTGCTCAGGAGTCGCGACTCGGAAGACTAAACCTGCAGGTCGCTCAGT # Right flank : CCGGACGCTCGGCTACGGTGGGCTTCCCCTCGTAACGTGGAGACCGAACCGGGAGAGGTTTGGTCGTGGCTGGAACCACGAGGCGTCGCTTTGATCCGGAGTTCCGGGCCGGGGCGGTGCGGATCGTCAGGGAGACTGGCAAGCCCGTCGCGCACGTTGCACGGGATCTTGGGATCAACGAGTACACGCTGTACAACTGGGTGCAGATGAACCGGCTCGCGGTAGGGCAGGCCGGAGGCGACGGCGGAGGCGGGACGCTGAAGGAATCGGCGGAAGAGGAACTGGCGCGGCTGCGGCAGGAGAAGGCCGAGCTGGTCAAGCAGCATGCCAAGGAAAAGGCGGCCTGGGAGAAGGAACGCGCGGAGCTGGAGGACGAGCGTGATGACGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14052-16644 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZZ01000005.1 Thermoactinospora rubra strain YIM 77501 contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 14052 30 96.7 31 .............................A CGAGAGAAGAGATTTATTGAATTCCCGCTTG 14113 30 96.7 31 .............................C GCTCCAGAGGCTCGTCACGGCCATCCAGGCG 14174 30 96.7 31 .............................C AGACCAGCGGCCGCGGCGCCGCTGGATCGCA 14235 30 100.0 31 .............................. GCGGCTCGCCGGCGATCGGCTGCCACGGGGT 14296 30 96.7 31 .............................A GCATCCGCAGCACCACTCGGGACTCCCCCAT 14357 30 96.7 32 .............................C TGCAGGAACGTCGGAATGAACGGCGCTATCTT 14419 30 96.7 31 .............................A GTGGGGCACGATATAGGTCACCTACCGTGCC 14480 30 100.0 31 .............................. GGACGTGCACGACGCCGCGAAAGCGCTCAAG 14541 30 96.7 31 .............................A CCCCCGACCGGCGCGAGCGCACCCAGCCCGC 14602 30 96.7 31 .............................T GTCCCCACCTGTTCCCCAACCCCACAAAACC 14663 30 96.7 31 .............................A GCGAGGGCGAGGAGATCGTCGCGCGGACGGT 14724 30 100.0 31 .............................. CCGCCTGACACTCACCGTCGACCTGTCACCC 14785 30 96.7 31 .............................A GCCGCGAGACCAAGGTGACCTTCTACTCGCG 14846 30 96.7 31 .............................C ACGGAGAGGCACCCGAAACGGCACGCTGGTT 14907 30 100.0 31 .............................. ATGAATCAGCCAAAACACAATCCCCTTTGAC 14968 30 100.0 31 .............................. GCGCCAGCTCGCCATGCTCGCCCAGCAGGCC 15029 30 96.7 31 .............................C CGATGACGTACCCGCGCCCGTACCCGCCCAG 15090 30 100.0 31 .............................. GCGGCAGGTCGATGTCCCGATGTGAGGCGTC 15151 30 96.7 31 .............................A GGGCGTTTTGGAATCGTCCTCCGGACGGGGA 15212 30 96.7 31 .............................A GCGAGGGCGAGGAGATCGTCGCGCGGACGGT 15273 30 100.0 31 .............................. GGTGGTCATGACCATGAAGACCGGCAACTTC 15334 30 96.7 31 .............................T TCCCTTCCGGGTTGCGGACGACCCGGGCCAC 15395 30 96.7 31 .............................C TCATCGCCGCCGGCCTGTGCGCGTGGGTCCT 15456 30 96.7 31 .............................C CGGCGGTGGAGCGGCGGGGGATGCGGGCGGT 15517 30 100.0 31 .............................. GATTGCGCCCGCGTTGATAGCGGACAAACTA 15578 30 100.0 31 .............................. ATCACGTCGGTGTCGCCGAGCCGTACCGTGA 15639 30 96.7 31 .............................T ACGCGACGAGCCCGCACTGGAGGAGATCTTG 15700 30 96.7 31 .............................C ATGGGCAGGGCCTGGATAGCGCCAGCGACGA 15761 30 96.7 31 .............................T GGACGTCACCCGCCGCTACTGGCCGCCCCTC 15822 30 100.0 31 .............................. CGACGACGAGCGGATCATGCATGGGGGTCCT 15883 30 96.7 31 .............................C CGGCCCTGTACGTGCAAATGGTCGGCCGTGT 15944 30 96.7 31 .............................T CCAGCCCGGCGAGGATCTGGTTGATGGCCTC 16005 30 100.0 31 .............................. CGCCTCACGCCAGCTTGGCGAGGCCCTCGGA 16066 30 100.0 31 .............................. ACGCCGAATCCCAGATGCGGGCCATGGAATC 16127 30 96.7 31 .............................A CGGCTGGGCGGCGAGCGTAGAACTTCTCCAG 16188 30 96.7 31 .............................C GCCACTGTCATAACGGCATTAAGTGAGACAG 16249 30 96.7 31 .............................T CCTGTCCCCGCCCGACATGCCGGACGTTGCT 16310 30 93.3 31 ............................TT CACCGGCGACTTTAAAGAGCACAGATGCAGC 16371 30 100.0 31 .............................. GCCCTGGTCCATCGTGCACGAGGACCGGCAC 16432 30 96.7 31 .............................C CAGGCAACGAAGGCACTCCGGGCAGCTTGTC 16493 30 96.7 31 .............................A ACCAAAGGTTGGCGATGGCAGCCAGGAACAT 16554 30 100.0 31 .............................. GGCCGGCCCCGGCGGGGCATGCTGGATCATC 16615 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ================================ ================== 43 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ACCGTCATCGTGCTGACGCGCTGCCCTGTGGGCTCCGAGGGTTCCTCACGCGCTGGTTGATGGAGATCTCTCCGGGGGTCTTCATCGGCGACCCGTCGGCGCGCGTGCGGGAGGCGCTGTGGAAAGAGGTACGGCAGTACGCCGACACCGGGCGGGCACTGCTGGTGTACTCGACGAACAACGAGCAGGGATTCGCCTTCGAAACCCATGATCACCATTGGCATCCGGTCGACCATGACGGCCTGGTGTTGATCCGGCGGCCCAAGGAGAAGCCGGCGATCTCGGCGGAAGCGCCCCCGAGTGGCTGGAGCAAGGCGGCCAAGCGTCGTCGTTACCGGCAGCGCTGAGGGGTGGTGGTCGATGGCGCGATCATGGAGCACGGCGGACGTGTGCGGTGGTACGGCGTTGCCGTCAGGCGGTCGGTTGAGTGGCGAATGTCCGATTTTCAGGAAGTGCTTCAAATCTGCGTGCTGACTGTGTGAATGTGCAGGTCGCGCAGT # Right flank : TGTGGATGCGGCCGGTGATCCCGGGATAGGTGTGCTCCCCGCCGGGGTGGTAGCGGACCGGTCGTCGCTTGGGGTCGGTGCGGCGCCAGCGGTCTTCGCTGGCCTACCGGTATATGGTTCCCCCGGACACACGGTAAATCCGGGCGTAGTACGCGGCGGTCTGGTAGGGCGTCGACGAGGTCACGCCTCCATCATCCGACCAAAGATCCGGTGAACGCATCAGCCGTACAGCTTGTCAGGTACCACCGACAGAATCGGGCGATGTGGGAGGCCCCGACACCCAGCCGTGGTGCGGCGCCGGGGTCTATCCATCGCGGTGGGAGGACAGGGAGCCACGTCTCGGCTGTGGCCGCCGGCCAGCGTGTGCCGTCGCGAGCGGGGCTGGGCATCCCGTCCCTGAGCGTCCCCCCTCATTGGGAGTCCTGAGCCGAGGGTGGCGCAGGGTGGTGGTCAGCGGTGGGCGATCGCGATGAGAGTACCGACGTAGCCAGCGGTGGGCG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 146470-146197 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ084335.1 Thermoactinospora rubra strain YIM 77501 Scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146469 29 100.0 32 ............................. CGCTCCCAGTCGTCGGGGCCGCGTCTGGCCTG 146408 29 100.0 32 ............................. CGCGTGACAGGGGTATTGCGGCTCGATACCCC 146347 29 100.0 32 ............................. GTGTGCGACTTGAGACCGCCGACGAGCGTGGT 146286 29 100.0 32 ............................. AGGGCGCCCTTGAACAGGCCCGGCGTCGTGGC 146225 29 89.7 0 ................T.......G..G. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CCGACTTGACAACACGCGGTGGGCCTTAACTACCCGGCATTGGGGATGATCCCCCCGCCCGACGAGGCGCTGTTCGCGATCCCG # Right flank : GGTGACGAGTGTGTAGCCGAACGGAAGGGTAAGTGCGGGCCGCCACAACGCACGTCCCCCGTGGAGAAGCTCCGGCAGTTCGCGGTGAGCCAAGACTCAATGCTGGGGAAAAACTCGCATGATACGTTAGTTACCTTGCATGTAACTAACGTCACGAGTTAGTTTGTGGTGGTGACGCGCTTCGTCGGACGGACGGCAGAACTGGCCGCGCTGGAAGAATGGTGGTCCAGCCCTTTCCCCAGGCCCGCGCTGATCTGGGGGCGCCGTCGCGTGGGCAAGACCGTTCTCATTGAGCGCTTCAGCACCGGCAAGCGCGTCGTCTTCCATACCGCCGCGAGGCGACCGACCAAGGATGAGCTGACAGAGCTGTCGCACCGCGTGGCCGCCGTGGCCGGCGACCCGCTGCGGGATCTACGTCTCCACCCCTACGAACGATGGGAAGACCTGCTGGAGGCGCTGGGGGCGGCCGCTCGAGACGAGCCACTGTTGCTCGTGCTCGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 180542-177893 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZZ01000032.1 Thermoactinospora rubra strain YIM 77501 contig032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180541 29 100.0 32 ............................. TCGATGCGGGTGACGGTGGCGTGGGTGGGGAT 180480 29 100.0 32 ............................. CTCGCGACCGGATCCGGCTCCTGCTGGGGGAC 180419 29 100.0 32 ............................. TCGGCCGGGGCGCCCCCGGCCCTGGCCACGGT 180358 29 100.0 32 ............................. GTCAGTGCCGAGGCAGACGTCTCCACGGTGAA 180297 29 100.0 32 ............................. ACGCCGTGATCGACGGCGGGGAGCAGGACTGG 180236 29 100.0 32 ............................. CCGATCGAGATCGTTGCCATCTCCATTGGCAA 180175 29 100.0 32 ............................. ACGTCATCGCCCCCGAGGAGGAGAGCGATCCC 180114 29 96.6 32 ............................A GCACCGTCCAGATCGCCAGGAGCGCCCCGGCC 180053 29 100.0 32 ............................. TCGCGCTTGGCTTCGACGGGGTCGGGCATCGA 179992 29 100.0 31 ............................. TCGCAGGAGTTCGCGAACAATCCGTCCAAGG 179932 29 100.0 33 ............................. GCTGGATACTCCGTCGTCACCGCCGGCGCCGTC 179870 29 100.0 32 ............................. AGAGAAAAGGAAAACCCCCGCGTGTAAGCACC 179809 29 96.6 32 ............................C TCGGCAGGGTGGGCCCGGGACGAGATGCGGCC 179748 29 100.0 32 ............................. CAGCTCGGCGCGCTGGCCCTCGACCTGGCGGG 179687 29 100.0 32 ............................. CGCGACTTGGCGAACCGTGTCGAGCTGGGCAA 179626 29 96.6 31 ............................T ACGTACGGCCCGGCTCGAGGCCCTCGAGCAA 179566 29 100.0 32 ............................. GCTCACACCATGGATGACATGACTGCGGTCAT 179505 29 100.0 32 ............................. CGGCGCAGCAGTCCGATCGCTTTGTCTCGGTC 179444 29 100.0 32 ............................. TTCACAACGCCCCACTCATTGCCGGACTCCAT 179383 29 100.0 32 ............................. ACCGACGCCCTGGACGCCGCCGAGGCGGAGGC 179322 29 100.0 32 ............................. ACCAAAACCCCCTACAACCCGGTGTATGACCT 179261 29 96.6 32 ............................T CTGGACACATGTTTGCCGATGCCGGATATCCG 179200 29 100.0 32 ............................. TGGTATGCGAAGTTCGCTGGCAAGGCGTATCT 179139 29 100.0 32 ............................. GTCACCAACCTCACGCTCAACCGGGTGGTCGA 179078 29 96.6 31 ............................A GTAGCTGCACGAGCTACGACAGGGGGGCGGG 179018 29 96.6 32 ............................T CTGGACACATGTTTGCCGATGCCGGATATCCG 178957 29 100.0 32 ............................. CGGCCGTTGTAGCGGTAGGAGGCGTAACCGTG 178896 29 100.0 32 ............................. CATCTGCTGTCCGGCCTGGCCCGGTGCGGCGT 178835 29 96.6 32 ..T.......................... TTCGACAGCGTTTCGGCTGGTGCCGGGTTTCA 178774 29 100.0 32 ............................. CGCCTGCCCAAGGGCACCACCTGGGACCGCGC 178713 29 100.0 32 ............................. GTGGTCCGGAGGAGAGAATGGGAGTGGCTGCC 178652 29 100.0 32 ............................. TTCGACAGCGTTTCGGCTGGTGCCGGGTTTCA 178591 29 100.0 32 ............................. CGCCTGCCCAAGGGCACCACCTGGGACCGCGC 178530 29 100.0 32 ............................. GTGGTCCGGAGGAGAGAATGGGAGTGGCTGCC 178469 29 100.0 32 ............................. TTCGACAGCGTTTCGGCTGGTGCCGGGTTTCA 178408 29 100.0 32 ............................. CGCCTGCCCAAGGGCACCACCTGGGACCGCGC 178347 29 100.0 32 ............................. GTGGTCCGGAGGAGAGAATGGGAGTGGCTGCC 178286 29 100.0 32 ............................. CATCGGCACCGCCACGCAGCCCACTGCGCAGC 178225 29 100.0 32 ............................. TTGCCCGGCTGATGCCCGAGCCGCTGTACCCG 178164 29 100.0 32 ............................. GAAACGTGGGGGTGGACCATCGGCACCTTCCT 178103 29 100.0 32 ............................. AAGCGGGCGATCCCGTTCAGGCCGTCTTTCAC 178042 29 100.0 32 ............................. TACCGCGAGGTGTCACTGCACGCGCAGCTGCG 177981 29 96.6 31 ............................C ACGAGGTGCTGGCCGCAATCGTCGCTGTGGC 177921 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TCAACGACATCCAGCACGTCCTTGATCCGGACGCGGCGGGATCTGTCGGTGATCGCACCAGCGATCTGCTTCACCTCTGGGATCCCACGGCCGGGCCTCTGCCGGCGGGCGTGAACTACGGATTCGAGGCCGACATCGTCGATCCTGAGTCGGAGTAGCGCATGGCGTCCATGGTTGTCATCTCGACTACCGCCATTCCCGATCATGTTGGCGGTGCGTTGTCCCGTTGGCTGATCGAGCCGACGCCTGGGTTGTATGTCGGGACGGTGTCGGCTCGGGTGCGCGATGAGTTGTGGGACGCGGTCAGTGCCAGCGTGGGCGACGGGGCGGCCGTTCTCATCCATCCGGCCGCGACCGAGCAGGGCTTTCTGATGCGTACTGCCGGGCGGCGCAGGCGCCATGTGACCGATTTCGACGGCCTTCAACTCATCATGTTCGCGGCCCCTCAGGATGCTGATGAGAAACCGCCAGTGGACTGGTAAAGGCGCAGGTCGCGAAGT # Right flank : TTGCTCGATCGGTAGACCGAACGGCTCAAGAAGCCCTGTCCACGCCCGTGGAATACGCACGCATCTACAAACGCCCTTCATGATCGGCAGCAGGAAGCGCCTGCTAGACAGTTGCCGAAACGCCCATGTCAGAGCAGACCGGAGGCGTCGTGGACCATGCCATCGGGCGGTTATCGGATGGGTCGCGACCCACGGCACATGCGTATCACGGCGCGATGGCGTCCAGCGGATACGTGGTCGATAGGACGATCGGGCGTGGGCCAGTGGGCAGTGACACCCCTCGGACACGCACTCTTTCACTATGTGAGGGCTGAGGATCACTTCGGCCCTCACTTTCGCTTTCTGGGGCAGGTAGGTCAGCTGGAGGCCGAGCCGCTGGTAGACCGGGGCCTTGAGGTCGGCCGGAGCTTGTCTTACGGCCTGGGCCACATCGCCGATCTTGCTGATGACGGCGGTGATCTCCTCCCGGGATGGCTTTCTCCTTCCGGTGCGGGTGCGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9970-14818 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZZ01000066.1 Thermoactinospora rubra strain YIM 77501 contig066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 9970 37 100.0 39 ..................................... CTGATGGTGATTGTGTCGGCTAGAAGCTCGGGGTCGGAA 10046 37 100.0 36 ..................................... CCCACCCGGTCGTGCCCCCCTTCCGGCCGGGTGGGG 10119 37 100.0 36 ..................................... GGTCTGGCGTCGCCATGCGGCGGGGTACATCTGGGC 10192 37 100.0 37 ..................................... TTGGGGTCGCGGACGTCCTCCACGATGCCCCACCACA 10266 37 100.0 34 ..................................... ACCTCGGGGGCGACGTGGGCGCCCGGGAAGGCTC 10337 37 100.0 38 ..................................... GCCAGGTAGCCGACCCCGACCGCGTACGGCTGCGACCA 10412 37 100.0 38 ..................................... CCGCGAATCGGCGAAGGCAGCCGCCAGACGGGTTGTCC 10487 37 100.0 35 ..................................... TGGTCGTCGTCGACCGGGTCGAGGGAGTCGGCGAG 10559 37 100.0 37 ..................................... ATCAGCCGACCCCCCGCTCTTGGATCTCGGCGAAGCA 10633 37 100.0 38 ..................................... TGGGGCTGGGTGGGTCTTCGTAACCACTCCTCGGCCCG 10708 37 100.0 37 ..................................... CTCGGGCGTCATGGTCATGGCTGGTCCTGGTGGTCGG 10782 37 100.0 36 ..................................... GAATCCGAGCGGAGGGTCCGCAAGGTCCCTCTGACG 10855 37 100.0 37 ..................................... GACGAGACCATCGGCGCCTGGAGCGACGCCGCTGAGG 10929 37 100.0 38 ..................................... GTCCGGTACGTACGCGCCAACCTCACCAACATCGGCGG 11004 37 100.0 36 ..................................... AACCCCGGCGACCGCGTCCCTGTCGAGCACGTCGAG 11077 37 100.0 37 ..................................... AACGTCCAGGCGTGCACCTGCTCCAGCCCGCCGGGCT 11151 37 100.0 37 ..................................... ACGGCTCTCACACCGGCGCCGCGTGAGGCCGTGCTCG 11225 37 100.0 37 ..................................... CCCGACACGTACGGCGATGAGGACGGCTGGCGCACGG 11299 37 100.0 35 ..................................... ACCAGCGCACCGCCTGGTTTGTCCGTTGACAGGGG 11371 37 100.0 41 ..................................... GACTGGAGATCGTGCGCCTCGGTGTACGGCCCGTCCGTACC 11449 37 100.0 36 ..................................... CAGGCCGTTCTTGCGGATGTCCGCCACCAGCTCGGC 11522 37 100.0 36 ..................................... GGCACCGGCTTGCCGGTACGGTCGGTGCGCACGAAG 11595 37 100.0 36 ..................................... GACAAGCCCACCGACGAGAGCGTGGCCTCCTCGACG 11668 37 100.0 38 ..................................... CAGGAGATCTGCCTCCGGACGGGTGTCCGCGCGGCCGT 11743 37 100.0 39 ..................................... CTGTCCAAGCCGAGCCGCGCCGACATGCCGCTCCCACCT 11819 37 100.0 38 ..................................... AGGTGGATGGCCACCTGGTGGACGCGGACCTTGCCGTC 11894 37 100.0 37 ..................................... CTCGACCCCGCTCCACCATCCATCCGCTCCCAGGAGG 11968 37 100.0 41 ..................................... ATGATTCGCGAGACTGGTGCGCGGCCGGTCATCGTTATCAA 12046 37 100.0 39 ..................................... AGGTGGATGGCCACCTGGCCCGGCTCGTCGCGGCGCGGG 12122 37 100.0 39 ..................................... AGGTGGATGGCCACCTGGCCCGGCTCGTCGCGGCGCGGG 12198 37 100.0 36 ..................................... GGCGAGCGGCTGCGACAGGCGGAGTCGGACCGGCGG 12271 37 100.0 39 ..................................... CAGCTGGACCTGCGCTTCAGACATCGGAACGGCTCTCCT 12347 37 100.0 35 ..................................... GAGACCGAGGCCGCCGGCGTCGCCCGCGTCTACAG 12419 37 100.0 35 ..................................... GAGACCGAGGCCGCCGGCGTCGCCCGCGTCTACAG 12491 37 100.0 37 ..................................... TTCCTGCCAGCGGGCCGGATCGACGGCCTGGGCGGCG 12565 37 100.0 41 ..................................... TTTTCGGGGCGGATGGTGCTCACCGCGTTGAAGCGGTATGA 12643 37 100.0 36 ..................................... TCACTACAGACCAGGTGGACGTTGTCCACCCACAAG 12716 37 100.0 35 ..................................... GGGATCGTCACTCATAGTGAGCTCCTGCGGTGATG 12788 37 100.0 39 ..................................... CTGCAGTACGCCCTCGCCCATGAGGAGCCATTTCGCCAA 12864 37 100.0 37 ..................................... GCTGGGGGGTGTCGGGTCGCTCTCCCAACACCACCAA 12938 37 100.0 35 ..................................... GTCAACTCCATGGCCGACCTGTTCCACAAGGCGGT 13010 37 100.0 37 ..................................... AAGGCGGACGGCTCCACGGTGCGGATCGACCCGGAAA 13084 37 100.0 37 ..................................... TAAGGGGAAGGTCGGGGTTCGAGTCCCCGGCGACGCA 13158 37 100.0 36 ..................................... GAGGTGAACCGCGCGCTGTTGCGGCAGGTGACCGAG 13231 37 100.0 36 ..................................... GGTTGGCGGTGGGGCGTGTACGGACTGGAGATCGAA 13304 37 100.0 36 ..................................... GTGTGCGACGCTCAGGGGACGCCCGCGACGATCGGG 13377 37 100.0 38 ..................................... GCCTGGGCGCGGCCCCGGTTGTGCTCGACCATGCCGTG 13452 37 100.0 38 ..................................... CATCGAGGAGCTCACGGAGCTGCTGGGCGTCGGCGCCA 13527 37 100.0 39 ..................................... CTCTGGTCATCCCGCCTCCTTCGTAGCGATCCGGTGACA 13603 37 100.0 34 ..................................... TTCCAGGTGGCCACGACCTGGTCGCCGTGCTTGG 13674 37 100.0 36 ..................................... ACGAGGCGAGGGCGGCGGGCCGGGCGGGTGGCCCTC 13747 37 100.0 37 ..................................... TTCGGCATGCCGAGCTGGTGTGAGCTGATGCTCCGCA 13821 37 100.0 39 ..................................... ACCAGCGCCCTGGAGCAAGTCGGCCTGGTCGGCGTGGAT 13897 37 100.0 36 ..................................... CCGTGGCGCCGCCCGCGCTGTCCGGACCAGCTCGGT 13970 37 100.0 36 ..................................... CGCTCGATGCGCGCCTGGCGCAGCATCGCCGCCAAC 14043 37 100.0 37 ..................................... ACCGGCGGATCCGGCAGGGACACCTCCGGCAGCTTGG 14117 37 100.0 37 ..................................... GATCACCACGTGCGTGGGCGCGTCGTCGACCGTCGCG 14191 37 100.0 38 ..................................... GACACGCCTGGCCTCACCCCGATCGGGACGGCCGACTA 14266 37 100.0 37 ..................................... TCCGCGATGGTGAACGCCGTACCGGAGGTGCCGCCCG 14340 37 100.0 38 ..................................... GACTCGGGCGGCACCCAGCTGTTCACCACCGGCAACAT 14415 37 100.0 35 ..................................... GCCGGGTGGTGTCGCTGTTCACCGACGAGCGGGAG 14487 37 100.0 38 ..................................... CTCGAATGGAGCATTGTGGAGCAGTGTGAACCATGACG 14562 37 97.3 36 ....................T................ AGGCCGCCGGGCAGGAGGCGCTGGCTGCGGAGTTGG 14635 37 100.0 36 ..................................... GTCCACCCCCACACGCCGATCGGGCTGATGGTCCGC 14708 37 100.0 37 ..................................... GCCCCCACCTCCGGGCTGGCGACGACGAGCGTGCGGG 14782 37 97.3 0 ...............T..................... | ========== ====== ====== ====== ===================================== ========================================= ================== 66 37 99.9 37 GCAGCACCGGCCCTCCACGGCCGGTGAGGATCGCAAC # Left flank : GCACTGCTGCCCCTCATCCAAGCCCGTCTCCTGGCCCGCCACCTCCGCGGCGACCTCGACCACTACCTCCCCTGGACCGTGAACTAGTGGACCTCCTCATCACCTACGACGTCGAAACCGTCACCCCCGCAGGCCAAGCCCGCCTACGCCGCGTCGCCAAGATCTGCGAAGCCTACGGACACCGGGTCCAGAAGTCCGTCTTCGAGGTGGTCTGCCGAGAACAGGACAAGCTCAAGCTCGTAGCGGAACTGCACGAGGTCATCGACCCCAAGCTCGACAGCATCCGCATCTATCACCTCCCAGCCCACGCCCTCGACGCTGTTGAACACCTAGGCCGACCACGCGAGGTCGATCCAAGAGGCCCCTTAGTGATCTAGGAACCCCAAATAGACACGCGACACGCCATGTGCTCCAAACCAATAATCGGACAGACGGAGCAACGTTGCTCTGCGAGATTCAAGTGCATCATCACCATTAGTGATAGTCCCTGATCGCAGACC # Right flank : CGCTCCAGTTCGGGGCGCCGACGGCACAGGGACACGCCTGGCCGGGCCACGTCCTCCCCACGCCCGTGGGGTGAGCCGACGCTCTGGGTGAAGTGGCAAATGTTGGCGGCCATAGGACCAGATCACTCGTTCTTGTTGATCCGTACGCGCTGCGCACGCTATGAAGCGCCCGACTATGGCCGGTATTGGTGGTTATGGCCAGGAGATTTGCCCTTTCGTGATCAAGGTGAGGGCGTGTCGCCTCGAGCTCAAAGCGGTCTTGCTGGCAATCCTGAGAAATCTGGCAGCGCGAGCGCGCCGGTCTCTCGCAGGCGTGCCCTCTACTCGGTTTGGAGTGATAGGGACGTTGGGTGAAGAAGTGGCGCACATCGACAGGCAATCCGATACGATCAGGCGCGCTGGCTGCCGGGTGGGTTTCGCGGCGGTGGCTGTCGGAGTCATCGTTGGTGCCGCCATCCTGAGCTCGGCTCCTGCGGATGCGGCCGTGGATCGGCGCGGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCACCGGCCCTCCACGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3956-2710 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZZ01000105.1 Thermoactinospora rubra strain YIM 77501 contig105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3955 29 100.0 32 ............................. CGCGCCATCCTCGCCGAGCAGCTCCTTGACGA 3894 29 100.0 32 ............................. CCGAGCGGCCAGGCCGGTCACGATGACCGAGA 3833 29 100.0 32 ............................. TGGCCCTGCCGCATCGCCTGATGCGTGCCGGT 3772 29 96.6 32 ............................A GCTGCGGAGGGCGCTGGCCGAGGCCGTCGAGC 3711 29 96.6 32 ............................T CAGCCACACCGACCCGCACCACACCCCCTCCG 3650 29 100.0 32 ............................. GGGAGCCACCCAGGCAGGCAGGCACGGGCGGC 3589 29 96.6 32 ............................C GGGGATGTGCAGATCGGGTCCGTCAGGCTGGC 3528 29 96.6 32 ............................T CCGAGCCGCGGTGTCTGCCGTACCCAGTCGAC 3467 29 100.0 32 ............................. CAGATCTGGGCCGGCATGTGGGCCGGGCTGGA 3406 29 100.0 32 ............................. AGAGGTGCGCTCGGGCTCGCGGATCTTGCCCG 3345 29 100.0 32 ............................. CACGTCGGGGACGTTGTGCCGTCCACGGTCAA 3284 29 100.0 32 ............................. GGTGCCGGTAAGACGACGCTACGGCGCGGCTA 3223 29 100.0 32 ............................. CCCGCACACTGGGCCGATACGGGCGCGAGCGG 3162 29 100.0 32 ............................. ATCACCGCCGACTCGATCACCGGGCGGCTGAT 3101 29 100.0 32 ............................. TCCGCGTAAGCCTGGCGGAAGCTGCGGTAACC 3040 29 100.0 32 ............................. CCGAGCCGGAACCGTTCGCGCTGGGTGGGGCT 2979 29 100.0 32 ............................. GTGATGCGCGTGACCAGGCTCGACGAGTGCGG 2918 29 100.0 33 ............................. GGCCGGGATGCGCAGCTGCTGCGCGTCGACGGG 2856 25 82.8 32 ----......T.................. TAGGTCCGATCCACGGCCAGGACCAGCGATCC 2799 29 100.0 32 ............................. CTCTCCATGGAGTCCGACAGGCCGACCCATGC 2738 29 96.6 0 ......T...................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.4 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CTTTTCACCGCGACGTTCGGGATAGCCGGTGAGCTGAAGAAAGCTTTCCGTATGGCCGCTTTGGAAGCAGCTTATGACCTTGCCGATGTCGTGAAGCCCTGCCCAGTACGCCAACAGAGCCCGCGCCTGGACCTCTGAGACCCCAAGCTCGGCGGCGATGGCCTTGCGCAAGCCTACCGCGAGATAGTCATCCCACAGCGTCTCGACCGCCGCGACAGCGTCGAGGAGGTGACAGACCACCGGATATGGTGATGGGAGCCCTCGCTGTTTTCCCCAGAGCCGTAAATCTATTTCTGGTACATCCTCCATAGGGGACCCAGCACCTCCTTCACATGCTCGCAGCTCTACGATCACACGACATGTCACTATAGGGGGAGGCGCCGACAAAAGTGCCCAGAACGGAGACGATGACTTCGTGACCCAAACGGAGACGGGCGCTGGGACGGTCCACACCTGCCCAAGAGTGACGAAGCCCGCCGTAAACTAGCAGGTCGCGAAGT # Right flank : GTGATGGTGGCGGGGTTTGGTCGAAATCGCCATTCTCCCCATTCCCGCGGGATGGGTGGCGGATCCGACACACGCTCGACACGCAAGTTCCATCCTGACCAGGCTGATAGCCGGTCGGCAACAGTAGCCATGCCTGCCCGTTGCCTTTTCATGATCAAGTCGAGGGTGTGTCATCTGGGACACGGCGCAGTCAGGTTGATGATCCTGAGGAGACCTGGCAACACGGCGCGCCGATTCCCCAGATGCGCCGCCCACTCGGCATGGAGCGATGGGACGTTGAGCGAAGAGAAGGCGCACATCGACCAGTACTCCAGCAGTGTCAGCAAGGCTGTCCGCCCGGCGGCTTTCACAGTGGCGGCTGTCGGGTTCGTCGTCGGAGTCGCCATGCTGGGCACTGCCTCCGCGGACGCGGCTGTGGGCCGGCGTGGTTGTCCCGATCTGAAGGGCGCTGCGGCCAGCGCGTTCGACGAGAACAAGCTCTGCAGGAACGTCGGCCAGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1037-2773 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZZ01000106.1 Thermoactinospora rubra strain YIM 77501 contig106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1037 29 100.0 32 ............................. GAAACCCTCGCATGCGACCTGGACGGCGACAA 1098 29 100.0 32 ............................. GGGCCCGGCCGCTCGGGCAGCGCGGTGCCGAT 1159 29 100.0 32 ............................. TGTCCGGCCTGGTCGGCACACTCAAGGCCGGC 1220 29 100.0 32 ............................. ACTGGCCGTAGCTCGGTCGTGGACTCGGTCGT 1281 29 100.0 32 ............................. CGGCCATGAACAAGCACTTCACCGCCTGGATC 1342 29 100.0 32 ............................. GACCGCATCCTCACCGCCGCCGTGCTGGAGAT 1403 29 100.0 32 ............................. TGGGTGTTGAGGTCCTTCAGGTCCCGCTTGAC 1464 29 96.6 32 ............................G TGGGTGCTCGGCCGGCACTTCGTGTCCTGGAC 1525 29 100.0 32 ............................. AACTCGCCGCTGATCAGCATGGAGCGGTTCAA 1586 29 100.0 32 ............................. GGCCTGCTGTACCGCGTCTTCGAGGACGCGCT 1647 29 100.0 32 ............................. ATCTTCGTCCCTATCGGCGCCAAGGCCGCTCG 1708 29 100.0 32 ............................. CATCACGGCGATGCTGATCCGCCCCGACATCC 1769 29 100.0 32 ............................. AGCGACGGGCTGATGGGGCCGATCATCCGCTC 1830 29 100.0 32 ............................. GCCGTCTACCACCTCATCGACGGCGGCGTGCT 1891 29 100.0 32 ............................. ATGGTCATCGGCTTGACCCCTGACTTTGAAGC 1952 29 100.0 32 ............................. TGGGCGTCCGGCGACCGTGGCCGCAGCCGGAG 2013 29 100.0 32 ............................. TGGCCGTACGCCCCGGCATAGGCCTTGGTGAT 2074 29 100.0 32 ............................. CCGCCGACGGCATTCCCCGGCAGGGCGAGATC 2135 29 100.0 32 ............................. GTCTCTCGGCAATGGCGGCCCCGTACAGCAGA 2196 29 100.0 32 ............................. AACGCCGTCCAGAGCGCCAAGAACCTCCTCGG 2257 29 96.6 32 ............................A TATCGAGCAACCCCGCTCGATATGTCACACGA 2318 29 100.0 32 ............................. GTGGACGGGTCGACCGTCTTGGACGGCGACCA 2379 29 100.0 32 ............................. TGCATACGTCTGTGCGAAGTTACCGCGAAACG 2440 29 100.0 32 ............................. ACGCACACCTTAGCTGACATGCTCCGGATCAT 2501 29 100.0 32 ............................. TTTTCGGTCTCGGTGCGGCCGTCGACGTCGGG 2562 29 100.0 32 ............................. AGGGCGCGTGGCCAGCACACCGTGGAGGGCAT 2623 29 100.0 32 ............................. AGATCGATCAGGTTGTCGGTGGTGAACGCGCC 2684 29 100.0 32 ............................. CTGCCCGCGATGGGAGCGGCGTGACATGAGCG 2745 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GTTCTCCCGCCGGCTGCTCGGCTACGCCATGTCCGCCCACCACGACGCGGCGCTGACGGTCGCCTCGCTGCAGATGGCGGCGGCCACCCGAGGCGGTGACGTGGACGGGGTGATCTTCCATTCGGACCGCGGATCGGAGTACACCGCCGCCCGCTACCAGGCCGAATGCCGCAAGCACGGGGTGGTGCAGTCGATGGGCCGGGTCGGGTGCGCGCTCGACAACGGAGCCGCCGAGTCGCTCAACAGCACCCTGAAGGTCGAGTTCGTGCACCGGCACCACTTCCGCACCCGGGCGGAGGCCCGCCTGAAGATCGCCACCTGGATAGCGGACTTCTACAACGTCAAGCGCAGGCACAGCGCCAACGACGGGCTGCCGCCTGTCACATTCGAGCGTCAGATGATCGAGAAGAGGCAAGCATCAACGGCCCTGCTGAGGGCCGCTGTGGCATAGGACCGTCTCCACGATTTGAGGGGATTGACAACGGCGGCACCAGCGACCT # Right flank : AATGCCGGGTAGTTAAGAGAGGCTGTGGGCTGTCAAGCAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //