Array 1 24852-26223 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOD01000028.1 Ligilactobacillus ruminis strain BIOML-A18 scaffold28_size26246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24852 30 96.7 38 .....A........................ GTGGTTATCAGAGCACATGACTTCAAAGCCACAATCAC G,AG,T [24855,24858,24862] 24924 30 100.0 37 .............................. TCGAGCAGCAGCAACTCTTTCTTGCCCGGTGCCAGTC 24991 30 100.0 35 .............................. GTAGGCATTTTCCAGTTTACGTCTACCTATGTAGC 25056 30 100.0 36 .............................. GTCTAGCCAGTGACCATTATAGTTAATTGCATCCGT 25122 30 100.0 35 .............................. GCATAGTAATCCTGCTTATAGTGCATATGAAGTCA 25187 30 100.0 38 .............................. TACGATATAGCCGGTTATGTTGTTATTTAACTAGTCTG 25255 30 100.0 37 .............................. CACAGGAAGATGATTTATATTTTCGTAAGGCTTATTA 25322 30 100.0 39 .............................. AATAGCAGGTTATTCTGTTACAAACAGTCTTGTTTTCAA 25391 30 100.0 36 .............................. GAAAATGGTTACGAAACTCATTCTCAATGGGGCTTA 25457 30 100.0 36 .............................. ACTCAACGTCACGAGAACACAGGTCATAACCGTATC 25523 30 100.0 37 .............................. ATTCAGCAGTTCTTTTTCCTCATCTTCAAGCTTGTTA 25590 30 100.0 39 .............................. CGGCACTCGCCTTGTTGGCGTCGATTGCCTTACGTATAT 25659 30 100.0 36 .............................. CATATCAGCAATCCGAATTTGATTTTCGTTGGTCAG 25725 30 100.0 37 .............................. TAGCATTCGTGTTATAGTCTGCATCATCATCATACCA 25792 30 100.0 37 .............................. TAATACCGTTCTCATTAAAACCATAATAATACGCCTT 25859 30 100.0 37 .............................. CAAGGTTACATTCTTGAAAAGCGTCAACAATGTAGGT 25926 30 100.0 37 .............................. TAATAATCCCGTCATAAGGATTGCCATAGTAAACGCT 25993 30 100.0 37 .............................. ATACATTGCTTGCAAAATGTGAAGAACCCATTGAACC 26060 30 100.0 37 .............................. AAATATTCGTATCGTTGCCAACATACTTTAGCGCATA 26127 30 100.0 37 .............................. ACGCCATTTTCAAGCGTCGCTTTTAGCTGGGGCATAA 26194 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 99.8 37 ATTTACATTCCTCATCAGTTAGATAAAAAC # Left flank : TCTCTTCTTGAGCTTTCGCAACACATTTCGCTCGGAGAACTGATCCACATCTACAAGCTCATGAGCAAGCGCAACCGCAAAGAAATCGCATCCATATATGACTGCAGCGCAAACGAGCTCATCAGTTGGATGGAATGCATCGCGCTTTACCGCAACTGCTGCTGTCACAACGGAAACCTGATCGATATCAAAATCGAAACAAGGCCCGTAACGCCCCGATCATATTCCAAATATCTTTTTCGCATGAAAAATACAGAGACGACAACGAACAGGTTCGCACTGGGCTGCGTTGTCATACTGCATTTGGCAAAAACAATCAACGTTGAAAAAGAAGAAACGGATGCGTTGAAACAGGCCATCTTAGCCCTTTCAAACGACAAGACGACGCTTGAATCCTATGGGTTCGTCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGAATGAGGCTAAAAACGATTTAAATTTATATGATTCCGTTGTTTTATTTTTTTATCGTCACC # Right flank : GATAATGGTTACGAAACTCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCATCAGTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2571-2798 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOD01000058.1 Ligilactobacillus ruminis strain BIOML-A18 scaffold58_size2822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2571 30 100.0 36 .............................. TAAAGTCATTGATTATGTATGCACAATGATCTATGA 2637 30 100.0 35 .............................. AAAAAATCGCAAAAAACGGTAGTCAGTCTGTCTTT 2702 30 100.0 37 .............................. ACATTTGCGACGTGGCCACTGGTCGCATTTTTGGACC 2769 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGCGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAGCTATGGA # Right flank : ATAAACTCGGTCAATGGATAGGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //